View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5601_low_3 (Length: 699)
Name: NF5601_low_3
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 50587492 - 50586810
Alignment:
| Q |
1 |
ccgctacggcgacaacaacgacgatgattacccttacaacaacaatcgtccttccagggcgtctcgtttctccgattctccgatgaactacaaccaccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50587492 |
ccgctacggcgacaacaacgacgatgattacccttacaacaacaatcgtccttccagggcgtctcgtttctccgattctccgatgaactacaaccaccgt |
50587393 |
T |
|
| Q |
101 |
cgaagtcctggtggtttccgccccgcccctctccaccgcagcaactttgatagtcccccacggtggtctccgggtagggttggaggtggtctccgtcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50587392 |
cgaagtcctggtggtttccgccccgcccctctccaccgtagcaactttgatagtcccccacggtggtctccgggtagggttggaggtggtctccgtcctc |
50587293 |
T |
|
| Q |
201 |
cacctgccggagatggcttcagaccggtgggcggtgatgaatttggattcaacctgccaccaccgccgttgtctggtcagaaacgtgggtttccgttctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50587292 |
cacctgccggagatggcttcagaccggtgggcggtgatgaatttggattcaacctgccaccaccgccgttgtctggtcagaaacgtgggtttccgttctc |
50587193 |
T |
|
| Q |
301 |
tggtcgtggtgcttcaccgggtgagtttg-tgattctgttttcgattattagctattaggttttgctgttatacgtagttcaattgctatcaatgctatc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50587192 |
tggtcgtggtgcttcaccgggtgagtttgttgattctgttttcgattattagctattaggttttgctgttatacgtagttcaattgctatcaatgctatc |
50587093 |
T |
|
| Q |
400 |
gtgtagttatctatgtttgtttgaaattgcatgctgaatatgaagcacaaatactggacacaacactgataccggtaataattagtgtaaatgacaattg |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50587092 |
gtgtagttatctatgtttgtttgaaattgcatgctgaatatgaagcacaaatactggacacaacactgataccggtaataattcgtgtaaatgacaattg |
50586993 |
T |
|
| Q |
500 |
aatgtattatgtagtcacatgtgtctgtgtctgacactggatacgccttcaatcagaaatgttggtgggttatgtttgcatgatcttattctacctaggt |
599 |
Q |
| |
|
||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50586992 |
aatgtattatgtagtcaca------tgcgtctgacaccggatacgccttcaatcagaaatgttggtgggttatgtttgcatgatcttattctacctaggt |
50586899 |
T |
|
| Q |
600 |
ttattttagggattatgtttccatgggttgtaggatgttgttgaccctagaatctttgcatcgttgatattagctagaattatatgatg |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50586898 |
ttattttagggattatgtttccatgggttgtaggatgttgttgaccctagaatctttgcatcgttgatattagctagaattatatgatg |
50586810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 27253321 - 27253367
Alignment:
| Q |
508 |
atgtagtcacatgtgtctgtgtctgacactggatacgccttcaatca |
554 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||| ||||||||| |
|
|
| T |
27253321 |
atgtaatcacatgtgtcagtgtctgacactagatacggcttcaatca |
27253367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University