View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_30 (Length: 251)
Name: NF5601_low_30
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1106538 - 1106776
Alignment:
| Q |
1 |
ccaagactaaaataaaacacagtagattaaaacgaaaaattctatatttgtaagaagaaaaatgttttatggcacgacaacttttgtcgcaccatttgca |
100 |
Q |
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| T |
1106538 |
ccaagactaaaataaaacacagtagattaaaacgaaaaattctatatttgtaagaagaaaaatgttttatggcacgacaacttttgtcgcaccatttgca |
1106637 |
T |
|
| Q |
101 |
cgattcatgaattctagatcaatttctctctttcagccatctctttctttctcnnnnnnnnnngaagagnnnnnnnnnggtggtgggtactaatttagtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
1106638 |
cgattcatgaattctagatcaatttctctctttcagccatctctttctttctc--ttttttttgaagagaaaaaaataggtggtgggtactaatttagtc |
1106735 |
T |
|
| Q |
201 |
attgtcacttcaccattaaactctggttactcttgcctttg |
241 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1106736 |
attgtcacttcaccattaaactccggttactcttgcctttg |
1106776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 29756140 - 29756218
Alignment:
| Q |
56 |
agaaaaatgttttatggcacgacaacttttgtcgcaccatttgcacgattcatgaattctagatcaatttctctctttc |
134 |
Q |
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| T |
29756140 |
agaaaaatattttatggcacgacaacttttgccgcaccatttgaacgattcatgaattcttgattaatttatctctttc |
29756218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 8998246 - 8998183
Alignment:
| Q |
71 |
ggcacgacaacttttgtcgcaccatttgcacgattcatgaattctagatcaatttctctctttc |
134 |
Q |
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|||||||||||||||||||||| | |||||||||| |||||||| | ||| |||||||||||| |
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| T |
8998246 |
ggcacgacaacttttgtcgcactacttgcacgattgctgaattcttgttcactttctctctttc |
8998183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 43390966 - 43390911
Alignment:
| Q |
58 |
aaaaatgttttatggcacgacaacttttgtcgcaccatttgcacgattcatgaatt |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43390966 |
aaaaatgttttatggcacgacaacttttttcgcaccatttgcacgattcatgaatt |
43390911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 3960847 - 3960888
Alignment:
| Q |
59 |
aaaatgttttatggcacgacaacttttgtcgcaccatttgca |
100 |
Q |
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| T |
3960847 |
aaaatgctttatggcacgacaagttttgtcgcaccaattgca |
3960888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 10629165 - 10629090
Alignment:
| Q |
59 |
aaaatgttttatggcacgacaacttttgtcgcaccatttgcacgattcatgaattctagatcaatttctctctttc |
134 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
10629165 |
aaaatgttttatggcatgacaacttttgtcgtaccatttgcataattcatgaattcttgatcaatttgtctctttc |
10629090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 25333415 - 25333447
Alignment:
| Q |
102 |
gattcatgaattctagatcaatttctctctttc |
134 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
25333415 |
gattcatgaattcttgatcaatttctctctttc |
25333447 |
T |
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