View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_31 (Length: 251)
Name: NF5601_low_31
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 40623676 - 40623442
Alignment:
| Q |
1 |
acagttactaagatcagcttgacaaccgtccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgat |
100 |
Q |
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| T |
40623676 |
acagttactaagatcagcttgacaaccatccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgat |
40623577 |
T |
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| Q |
101 |
gatgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaacatggccaagcttcaaatcaa |
200 |
Q |
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| T |
40623576 |
gatgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaacatggccaagcttcaaatcaa |
40623477 |
T |
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| Q |
201 |
cagaaaaatctccttttgttctgtaatctccaaac |
235 |
Q |
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| T |
40623476 |
cagaaaaatctccttttgttctgtaatctccaaac |
40623442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 27512038 - 27511834
Alignment:
| Q |
3 |
agttactaagatcagcttgacaaccgtccacaagacatgaaactatctgagtcccattgttaatagctctagctctcttagatgaccctgaagttgatga |
102 |
Q |
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| T |
27512038 |
agttactaagatcagcttgacaaccatccgcaagacttgaaactatctgagttccattgttaatagctctagctttcttagatgaccctgaagttgaaga |
27511939 |
T |
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| Q |
103 |
tgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaacatggccaagcttcaaatcaaca |
202 |
Q |
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| T |
27511938 |
tgatgaagatgttattttggtaaatccaccaacatctttggactttgtaagccctgattcagcgctagaatttccaacatggccaagcttcaaatcaaca |
27511839 |
T |
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| Q |
203 |
gaaaa |
207 |
Q |
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|||| |
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| T |
27511838 |
aaaaa |
27511834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 27270398 - 27270525
Alignment:
| Q |
82 |
agatgaccctgaagttgatgatgatgaagatgtcattttggtaaatccaccaacatctttggactttgttagccctgattcagtgctagaatttccaaca |
181 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
27270398 |
agatgaccctgaagttgaagatgatgaagatttcattttggtaaatccaccaacatctttggactttgtaagccctgatttagtgctagaatttccaaca |
27270497 |
T |
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| Q |
182 |
tggccaagcttcaaatcaacagaaaaat |
209 |
Q |
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| T |
27270498 |
tggccaagcttcaaatcagcaaaaaaat |
27270525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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