View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_32 (Length: 250)
Name: NF5601_low_32
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6944869 - 6945092
Alignment:
| Q |
1 |
tttaggagtttgattactattgtgatttgtgagaaacatatatggatgatagattacattgagtaaactaaagaggaaaagaatatcatataggatccac |
100 |
Q |
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| T |
6944869 |
tttaggagtttgattactattgtgacttgtgagaaacatatatggatgatagattacattgagtaaactaaagaggaaaagaatatcatataggatccac |
6944968 |
T |
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| Q |
101 |
actcagaattcctagctgttttttgctttgcagcatctacaaaatagaaaggaaaaaggcagcttcttaacctcataaaaagagagaaacaaaatatact |
200 |
Q |
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| T |
6944969 |
actcagaattcctagctgttttttgctttgcagcatctacaaaatagaaaggaaaaaggcagcttcttaacctcataaaaagagagaaacaaaatatact |
6945068 |
T |
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| Q |
201 |
tttttggccatattattgtttctt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
6945069 |
tttttggccatattattgtttctt |
6945092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 7474372 - 7474287
Alignment:
| Q |
30 |
tgagaaacatatatggatgatagattacattgagtaaactaaagaggaaaagaatatcatataggatccacactcagaattcctag |
115 |
Q |
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||||||||||||||| |||| || ||| |||||| || | |||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
7474372 |
tgagaaacatatatgaatgagagtttagattgaggaagttgaagaggaaaaagatatcatataggacccacacttggaattcctag |
7474287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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