View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_34 (Length: 243)
Name: NF5601_low_34
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 34 - 225
Target Start/End: Complemental strand, 29480576 - 29480385
Alignment:
| Q |
34 |
atattcatgagctcgatgtgtgatacataaggaatgtttgtctcatggtattagttcttccttgtttatttggcccaataatccatcaacttgaaatcca |
133 |
Q |
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| T |
29480576 |
atattcatgagctcgatgtgtgatacgtaaggaatgtttgtctcattgtattagttcttccttgtttatttggcagaataatccatcatcttgaaatcca |
29480477 |
T |
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| Q |
134 |
caagtaattattgtgtgaaagacatgatggttttctactgccttcttcaattgagggacatggaaaatagaatgtatgcgtgctgatgaatt |
225 |
Q |
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| T |
29480476 |
caagtaattcttgtgtgacagacatgatggttttctactgccttcttcaattgagggacatggaaaatagaatgtatgtgtgctgatgaatt |
29480385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 29468836 - 29468674
Alignment:
| Q |
62 |
aaggaatgtttgtctcatggtattagttcttccttgtttatttggcccaataatccatcaacttgaaatccacaagtaattattgtgtgaaagacatgat |
161 |
Q |
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| T |
29468836 |
aaggaatgtttgtctcatggtattagttcttctttgtttatttggcccaataatccatcagcttgaaatccacaagtaattcttgtgtggcagacaggat |
29468737 |
T |
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| Q |
162 |
ggttttctactgccttcttcaattgagggacatggaaaatagaatgtatgcgtgctgatgaat |
224 |
Q |
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| T |
29468736 |
ggttttctactgccttcttcaattgagggacatggaaaatagaatgtatgcgtgctgaagaat |
29468674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 15003133 - 15003086
Alignment:
| Q |
71 |
ttgtctcatggtattagttcttccttgtttatttggcccaataatccat |
119 |
Q |
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| T |
15003133 |
ttgtctcatggtattagttctt-cttgtttatttggctcaataatccat |
15003086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 15009344 - 15009388
Alignment:
| Q |
64 |
ggaatgtttgtctcatggtattagttcttccttgtttatttggcc |
108 |
Q |
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| T |
15009344 |
ggaatgtttgtctcatggtgttagtttttccttgtttatgtggcc |
15009388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 15014312 - 15014366
Alignment:
| Q |
65 |
gaatgtttgtctcatggtattagttcttccttgtttatttggcccaataatccat |
119 |
Q |
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| T |
15014312 |
gaatgcttgtctcatcctgttagttcttctttgtttatttggcccaagaatccat |
15014366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 15020805 - 15020854
Alignment:
| Q |
70 |
tttgtctcatggtattagttcttccttgtttatttggcccaataatccat |
119 |
Q |
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| T |
15020805 |
tttgtctcatgatattagcttttccttgtttatttggcccaggaatccat |
15020854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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