View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_low_35 (Length: 237)

Name: NF5601_low_35
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_low_35
NF5601_low_35
[»] chr2 (16 HSPs)
chr2 (85-222)||(37803391-37803527)
chr2 (92-146)||(14489476-14489530)
chr2 (92-145)||(18709242-18709295)
chr2 (93-146)||(34761127-34761180)
chr2 (85-140)||(31827790-31827845)
chr2 (92-138)||(4925709-4925755)
chr2 (92-145)||(19895608-19895661)
chr2 (92-140)||(5362175-5362223)
chr2 (92-140)||(19206142-19206190)
chr2 (92-145)||(34679356-34679409)
chr2 (85-118)||(35718914-35718947)
chr2 (92-137)||(37431803-37431848)
chr2 (93-150)||(37803108-37803165)
chr2 (1-70)||(37803308-37803377)
chr2 (93-137)||(5470333-5470377)
chr2 (92-140)||(16043291-16043339)
[»] chr7 (21 HSPs)
chr7 (92-139)||(3247437-3247484)
chr7 (89-140)||(18504502-18504553)
chr7 (92-140)||(45697487-45697535)
chr7 (91-145)||(44312740-44312794)
chr7 (92-140)||(23826288-23826336)
chr7 (94-140)||(21748082-21748128)
chr7 (91-140)||(6726258-6726306)
chr7 (92-137)||(19645067-19645112)
chr7 (91-127)||(20185180-20185216)
chr7 (92-140)||(36580274-36580322)
chr7 (89-120)||(15348221-15348252)
chr7 (94-140)||(6726527-6726573)
chr7 (93-138)||(8074142-8074187)
chr7 (91-140)||(11373847-11373896)
chr7 (93-126)||(23746161-23746194)
chr7 (92-140)||(4049987-4050035)
chr7 (92-140)||(14247294-14247342)
chr7 (92-140)||(17876423-17876471)
chr7 (92-120)||(24432978-24433006)
chr7 (92-140)||(28350116-28350164)
chr7 (92-140)||(45718137-45718185)
[»] chr3 (20 HSPs)
chr3 (93-139)||(19404399-19404445)
chr3 (92-146)||(36677518-36677572)
chr3 (92-146)||(36687600-36687654)
chr3 (91-137)||(46226952-46226998)
chr3 (91-140)||(54718994-54719043)
chr3 (91-140)||(14856546-14856595)
chr3 (94-139)||(27178141-27178186)
chr3 (91-140)||(28204480-28204529)
chr3 (92-140)||(86830-86878)
chr3 (92-140)||(17773170-17773218)
chr3 (92-140)||(19074471-19074519)
chr3 (93-140)||(14349375-14349422)
chr3 (91-145)||(38958108-38958162)
chr3 (92-138)||(48348257-48348303)
chr3 (91-140)||(3193046-3193095)
chr3 (91-140)||(33329611-33329660)
chr3 (92-140)||(12759503-12759551)
chr3 (92-140)||(14340733-14340781)
chr3 (92-140)||(28944231-28944279)
chr3 (92-140)||(44433055-44433102)
[»] chr4 (19 HSPs)
chr4 (93-137)||(16292534-16292578)
chr4 (92-140)||(43074616-43074664)
chr4 (91-140)||(53312550-53312599)
chr4 (92-139)||(27978962-27979009)
chr4 (92-145)||(35393935-35393988)
chr4 (93-137)||(4411493-4411537)
chr4 (92-140)||(6614847-6614895)
chr4 (92-140)||(11824464-11824512)
chr4 (92-140)||(35383765-35383813)
chr4 (92-146)||(1571672-1571726)
chr4 (92-137)||(14449276-14449321)
chr4 (91-140)||(43074831-43074880)
chr4 (94-139)||(54983849-54983894)
chr4 (89-137)||(3658187-3658235)
chr4 (93-137)||(21322710-21322754)
chr4 (92-120)||(35615434-35615462)
chr4 (92-140)||(50769627-50769675)
chr4 (89-137)||(51362803-51362851)
chr4 (92-140)||(51371729-51371777)
[»] chr5 (11 HSPs)
chr5 (89-140)||(586675-586726)
chr5 (89-137)||(43098031-43098079)
chr5 (92-146)||(2974900-2974954)
chr5 (91-137)||(3999089-3999135)
chr5 (89-137)||(3333695-3333743)
chr5 (92-139)||(39574240-39574287)
chr5 (93-138)||(25910992-25911037)
chr5 (92-129)||(26702679-26702716)
chr5 (92-129)||(26972412-26972449)
chr5 (92-140)||(35166558-35166607)
chr5 (92-140)||(20512465-20512513)
[»] chr8 (9 HSPs)
chr8 (91-145)||(20228226-20228280)
chr8 (91-151)||(6807431-6807491)
chr8 (92-140)||(9762465-9762513)
chr8 (92-140)||(17070907-17070955)
chr8 (92-140)||(17577317-17577365)
chr8 (89-137)||(45456969-45457017)
chr8 (91-120)||(26824097-26824126)
chr8 (91-140)||(41487200-41487249)
chr8 (93-137)||(25144207-25144251)
[»] chr6 (9 HSPs)
chr6 (92-137)||(1377472-1377517)
chr6 (92-137)||(1385220-1385265)
chr6 (93-138)||(8223762-8223807)
chr6 (85-145)||(238925-238985)
chr6 (92-140)||(3579595-3579643)
chr6 (91-140)||(5003089-5003138)
chr6 (92-140)||(12766480-12766528)
chr6 (92-138)||(28011390-28011436)
chr6 (92-120)||(18030957-18030985)
[»] chr1 (10 HSPs)
chr1 (92-140)||(39642200-39642248)
chr1 (89-127)||(27864187-27864225)
chr1 (93-140)||(25486479-25486526)
chr1 (95-137)||(16874511-16874553)
chr1 (92-138)||(18632605-18632651)
chr1 (91-145)||(25085394-25085448)
chr1 (92-140)||(5287250-5287298)
chr1 (92-148)||(23220827-23220883)
chr1 (89-145)||(41915785-41915841)
chr1 (92-140)||(46573093-46573141)
[»] scaffold0062 (1 HSPs)
scaffold0062 (93-140)||(46076-46123)
[»] scaffold0417 (1 HSPs)
scaffold0417 (89-118)||(9600-9629)
[»] scaffold0016 (1 HSPs)
scaffold0016 (93-137)||(203441-203484)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 37803391 - 37803527
Alignment:
Q  85 aggagatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaattttatacaatgttgatttaaatgttttacttatctatg 184  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37803391 aggaggtcaaaatcgcaacttcgtaaaagttagggggcgaaaattgttattaagccgaaaattttatacaatgttgatttaaatgttttacttatctatg 37803490  T
Q  185 ctaaatgattttttatctgttaaatttattgaggtttt 222  Q
    |||||||| |||||||||||||||||||||||||||||    
T  37803491 ctaaatga-tttttatctgttaaatttattgaggtttt 37803527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 14489476 - 14489530
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaat 146  Q
    ||||||||||||||||||||||||||||| |||||| || ||||||||| |||||    
T  14489476 caaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcctaaaat 14489530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 18709295 - 18709242
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    |||||||| ||||||||||||||||||||||||||| || ||||||||| ||||    
T  18709295 caaaatcgaaacttcgtgaaagttaggggacgaaaactgctattaagccaaaaa 18709242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 34761127 - 34761180
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaat 146  Q
    ||||||||||||||||||||||||||||||||||| || |||||| || |||||    
T  34761127 aaaatcgcaacttcgtgaaagttaggggacgaaaactgctattaaacctaaaat 34761180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 31827790 - 31827845
Alignment:
Q  85 aggagatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||| ||| |||||||||||||| ||||||||||| ||||||||| |||||||||    
T  31827790 aggaggtcataatcgcaacttcgtaaaagttagggggcgaaaattgctattaagcc 31827845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 4925709 - 4925755
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaag 138  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||    
T  4925709 caaaatcgcaacttcgtgaaagttaggggacaaaaattactattaag 4925755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 19895661 - 19895608
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    ||||||||||| ||||| |||||||||||||||||| || ||||||||| ||||    
T  19895661 caaaatcgcaatttcgtaaaagttaggggacgaaaactgatattaagccaaaaa 19895608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 5362223 - 5362175
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||| |||||||||||||| ||||||||  |||||||||    
T  5362223 caaaatcgcaactttgtgaaagttagggggcgaaaattactattaagcc 5362175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 19206190 - 19206142
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||||    
T  19206190 caaaatcgcaactttgtgaaaattagggggcgaaaattgctattaagcc 19206142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 34679356 - 34679409
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    ||||||| ||||||||||||||||||||| | |||| || ||||||||| ||||    
T  34679356 caaaatcacaacttcgtgaaagttagggggcaaaaactgctattaagccaaaaa 34679409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 35718914 - 35718947
Alignment:
Q  85 aggagatcaaaatcgcaacttcgtgaaagttagg 118  Q
    |||||||||| |||||||||||||||||||||||    
T  35718914 aggagatcaagatcgcaacttcgtgaaagttagg 35718947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 37431803 - 37431848
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||| |||||||||| |||||| || ||||||    
T  37431803 caaaatcgcaacttcgtggaagttagggggcgaaaactgctattaa 37431848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 37803165 - 37803108
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaatttta 150  Q
    ||||||||||||| | |||||||||| ||| |||| || ||||||||| |||||||||    
T  37803165 aaaatcgcaactttgagaaagttaggagactaaaactgctattaagccaaaaatttta 37803108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37803308 - 37803377
Alignment:
Q  1 ttttcttaccaaaaattggctttgggaatcaaacttgctatagttgaaaaaattataggcggttttgtag 70  Q
    |||| ||||||||||||||| ||||| ||||||  ||||| ||||| |||| |||| |||||||| ||||    
T  37803308 tttttttaccaaaaattggccttggggatcaaaactgctacagttgcaaaacttatgggcggtttcgtag 37803377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 5470377 - 5470333
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||||| | |||||||||||| || ||||||    
T  5470377 aaaatcgcaacttcgtgaaaataaggggacgaaaactgctattaa 5470333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 16043291 - 16043339
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||| |||||||||||||||||||| |||||| || | |||||||    
T  16043291 caaaatcgtaacttcgtgaaagttagggggcgaaaactgctgttaagcc 16043339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 3247437 - 3247484
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagc 139  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3247437 caaaatcacaacttcgtgaaagttaggggacgaaaattgttattaagc 3247484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 18504502 - 18504553
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  18504502 gatcaaaatcgcaacttcatgaaagttaggggacgaaaactgttattaagcc 18504553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 45697535 - 45697487
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  45697535 caaaatcgcaacttcgagaaagttaggggacgaaaactgttattaagcc 45697487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 44312794 - 44312740
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||    
T  44312794 tcaaaatcgcaacttcgtaaaagttaggagacgaaaactgttattaagccaaaaa 44312740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 23826288 - 23826336
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||    
T  23826288 caaaatcgcaacttcgtgaaagttaggggacaaaaactgctattaagcc 23826336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 21748082 - 21748128
Alignment:
Q  94 aaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||||| |||||| || |||||||||    
T  21748082 aaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcc 21748128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 6726306 - 6726258
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  6726306 tcaaaatcgcaacttcgtgaaaggtagggg-cgaaaactgttattaagcc 6726258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 19645067 - 19645112
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||    
T  19645067 caaaatcgcaacttcgtgaaagttaaggggcgaaaattgctattaa 19645112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 20185180 - 20185216
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaa 127  Q
    |||||||||||||||||||||||||||||| ||||||    
T  20185180 tcaaaatcgcaacttcgtgaaagttagggggcgaaaa 20185216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 36580322 - 36580274
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||| ||||||||||||||||||||| |||||| || |||||||||    
T  36580322 caaaatcacaacttcgtgaaagttaggggccgaaaactgctattaagcc 36580274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 120
Target Start/End: Original strand, 15348221 - 15348252
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttagggg 120  Q
    ||||||||||||||||||||||||||||||||    
T  15348221 gatcaaaatcgcaacttcgtgaaagttagggg 15348252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 6726527 - 6726573
Alignment:
Q  94 aaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||||||| ||||  | |||||||||    
T  6726527 aaatcgcaacttcgtgaaagttaggggacaaaaacagctattaagcc 6726573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 8074142 - 8074187
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaag 138  Q
    ||||||| |||||||||||||||||||| |||||| || |||||||    
T  8074142 aaaatcgtaacttcgtgaaagttagggggcgaaaactgctattaag 8074187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 11373896 - 11373847
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||| ||||||||||||| ||||||||||| |||||| || |||||||||    
T  11373896 tcaagatcgcaacttcgtaaaagttagggggcgaaaactgctattaagcc 11373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 23746161 - 23746194
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaa 126  Q
    |||||||||||||||| |||||||||||||||||    
T  23746161 aaaatcgcaacttcgtaaaagttaggggacgaaa 23746194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 4049987 - 4050035
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||| ||||||||||||||||| ||| |||||| || |||||||||    
T  4049987 caaaatcacaacttcgtgaaagttaaggggcgaaaactgctattaagcc 4050035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 14247342 - 14247294
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||| ||||||||||||||||||| | |||||| || |||||||||    
T  14247342 caaaatcacaacttcgtgaaagttaggtggcgaaaactgctattaagcc 14247294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 17876423 - 17876471
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||| ||||||||||||||||||||  ||||| || |||||||||    
T  17876423 caaaatcgtaacttcgtgaaagttagggggtgaaaactgctattaagcc 17876471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 24433006 - 24432978
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttagggg 120  Q
    |||||||||||||||||||||||||||||    
T  24433006 caaaatcgcaacttcgtgaaagttagggg 24432978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 28350164 - 28350116
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||| |||||||||||||||||||| | |||| || |||||||||    
T  28350164 caaaatcgtaacttcgtgaaagttagggggctaaaactgctattaagcc 28350116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 45718137 - 45718185
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||| |||||||||||||||||||||| | | ||||||| |||||||||    
T  45718137 caaattcgcaacttcgtgaaagttaggaggcaaaaattgctattaagcc 45718185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 19404445 - 19404399
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagc 139  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  19404445 aaaatcgcaacttcgtgaaagttaggggacgaaaactgttattaagc 19404399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 36677572 - 36677518
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaat 146  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||| |||||    
T  36677572 caaaatcgcaacttcgtgaaagttagcgggcgaaaactgttattaagcctaaaat 36677518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 36687654 - 36687600
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaat 146  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||| |||||    
T  36687654 caaaatcgcaacttcgtgaaagttagcgggcgaaaactgttattaagcctaaaat 36687600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 46226952 - 46226998
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  46226952 tcaaaatcgcaacttcgtgaaagttaggggacgaaaactgctattaa 46226998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 54719043 - 54718994
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  54719043 tcaaaatcgcaacttcgtgaaagttagtggacgaaaactgctattaagcc 54718994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 14856595 - 14856546
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||||||||||||||  |||||| || |||||||||    
T  14856595 tcaaaatcgcaacttcgtgaaagttagggtgcgaaaactgctattaagcc 14856546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 27178186 - 27178141
Alignment:
Q  94 aaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagc 139  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||    
T  27178186 aaatcgcaacttcgtaaaagttaggggacgaaaactgctattaagc 27178141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 28204529 - 28204480
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||||||||||| ||| |||||| || |||||||||    
T  28204529 tcaaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcc 28204480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 86830 - 86878
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||| |||||||||||||||||||| |  |||||||||    
T  86830 caaaatcgcaacttcatgaaagttaggggacgaaaactcctattaagcc 86878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 17773218 - 17773170
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||| |||||||||||||| |||||| || |||||||||    
T  17773218 caaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcc 17773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 19074519 - 19074471
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||| |||||||||||||| |||||| || |||||||||    
T  19074519 caaaatcgcaacttagtgaaagttagggggcgaaaactgctattaagcc 19074471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 14349375 - 14349422
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||| ||||||||||| |||||| || |||||||||    
T  14349375 aaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaagcc 14349422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 38958108 - 38958162
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    ||||||||| || ||||||||||||||||| |||||| || ||||||||| ||||    
T  38958108 tcaaaatcgtaatttcgtgaaagttagggggcgaaaactgctattaagcctaaaa 38958162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 48348303 - 48348257
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaag 138  Q
    ||||||||||||||||| ||||||||||| |||||| || |||||||    
T  48348303 caaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaag 48348257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 3193046 - 3193095
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||| |||||||||||||  ||||| || |||||||||    
T  3193046 tcaaaatcgcaacttcttgaaagttagggggtgaaaactgctattaagcc 3193095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 33329660 - 33329611
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||| |||||||| || |||||| || |||||||||    
T  33329660 tcaaaatcgcaacttcgtaaaagttagagggcgaaaactgctattaagcc 33329611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 12759551 - 12759503
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||| ||| ||||||||||||| | |||| ||||||||||||    
T  12759551 caaaatcgcaatttcttgaaagttagggggcaaaaactgttattaagcc 12759503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 14340781 - 14340733
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||| |||||||||||||||||||| |||||| |  |||||||||    
T  14340781 caaaatcgtaacttcgtgaaagttagggggcgaaaactcctattaagcc 14340733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 28944231 - 28944279
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||| || ||||||||||||| |||| || |||||||||    
T  28944231 caaaatcgcaacttagtaaaagttaggggacaaaaactgctattaagcc 28944279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 44433102 - 44433055
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||| |||||||||||||||||||||  |||||||| |||||||||    
T  44433102 caaaatcacaacttcgtgaaagttagggg-tgaaaattgctattaagcc 44433055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 16292534 - 16292578
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  16292534 aaaatcgcaacttcgtgaaagttagggggcgaaaattgttattaa 16292578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 43074664 - 43074616
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  43074664 caaaatcgcaacttcgtgaaagttagggggcgaaaattgctattaagcc 43074616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 53312550 - 53312599
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||    
T  53312550 tcaaaatcgcaacttcgtgaaagttagggggtgaaaactgttattaagcc 53312599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 27978962 - 27979009
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagc 139  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||    
T  27978962 caaaatcgcaacttcgttaaagttagggggcgaaaaatgttattaagc 27979009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 35393935 - 35393988
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    |||||||||||||||||||||||||||||  ||||| || ||||||||| ||||    
T  35393935 caaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcctaaaa 35393988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 4411493 - 4411537
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||    
T  4411493 aaaatcgcaacttcgtgaaaattagggggcgaaaactgttattaa 4411537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 6614895 - 6614847
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||| ||| |||||| || |||||||||    
T  6614895 caaaatcgcaacttcgtgaaagttaagggtcgaaaaatgctattaagcc 6614847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 11824464 - 11824512
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||| ||||||||||| || ||| ||||||||||||    
T  11824464 caaaatcgcaacttcgtaaaagttagggggcggaaactgttattaagcc 11824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 35383813 - 35383765
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||| ||||||||||||||||||||| |||||| || |||||||||    
T  35383813 caaaatcacaacttcgtgaaagttagggggcgaaaactgctattaagcc 35383765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 1571672 - 1571726
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaat 146  Q
    |||||||||||||||||||||||||||    ||||| |||||||||||| |||||    
T  1571672 caaaatcgcaacttcgtgaaagttaggacgtgaaaactgttattaagcctaaaat 1571726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 14449321 - 14449276
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    ||||||| ||||||||||||||||||||| |||||| || ||||||    
T  14449321 caaaatctcaacttcgtgaaagttagggggcgaaaactgctattaa 14449276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 43074831 - 43074880
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||| | |||||||||||| | ||||||| |||||||||    
T  43074831 tcaaaatcgcaactttgggaaagttagggggctaaaattgctattaagcc 43074880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 54983894 - 54983849
Alignment:
Q  94 aaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagc 139  Q
    |||||||| |||||| |||||||||||||||||| || ||||||||    
T  54983894 aaatcgcatcttcgtaaaagttaggggacgaaaactgctattaagc 54983849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 3658187 - 3658235
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||| | |||||||| ||||||||| || ||||||    
T  3658187 gatcaaaatcgcaacttcataaaagttagaggacgaaaactgctattaa 3658235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 21322754 - 21322710
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||| |||||||||| || ||||||||| ||||||    
T  21322754 aaaatcgcaacttcatgaaagttagagggcgaaaattgctattaa 21322710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 35615434 - 35615462
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttagggg 120  Q
    |||||||||||||||||||||||||||||    
T  35615434 caaaatcgcaacttcgtgaaagttagggg 35615462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 50769627 - 50769675
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||| ||||||||||| |||||| || | |||||||    
T  50769627 caaaatcgcaacttcgtaaaagttagggggcgaaaactgcttttaagcc 50769675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 51362803 - 51362851
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||| |||||| || |||||||||||||||||| || ||||||    
T  51362803 gatcaaaatcacaactttgtaaaagttaggggacgaaaactgctattaa 51362851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 51371729 - 51371777
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||| |||||||||||| |||||| |  |||||||||    
T  51371729 caaaatcgcaacttcgagaaagttagggggcgaaaactactattaagcc 51371777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 586675 - 586726
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  586675 gatcaaaatcgcaacttcatgaaagttagaggacgaaaattgctattaagcc 586726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 43098079 - 43098031
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||||| |||||||||||||||||| || ||||||    
T  43098079 gatcaaaatcgcaacttcgtaaaagttaggggacgaaaactgctattaa 43098031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 2974900 - 2974954
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaat 146  Q
    ||||||||||||||||||||||||||||| | |||| || ||||||||| |||||    
T  2974900 caaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagcctaaaat 2974954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 3999135 - 3999089
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||||||||||||||| |||||| || ||||||    
T  3999135 tcaaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaa 3999089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 3333743 - 3333695
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||    
T  3333743 gatcaaaatcgcaacttcatgaaagttagggggcgaaaactgctattaa 3333695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 39574287 - 39574240
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagc 139  Q
    |||||||||||||||||||||||||| || |||||| || ||||||||    
T  39574287 caaaatcgcaacttcgtgaaagttagagggcgaaaactgctattaagc 39574240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 25910992 - 25911037
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaag 138  Q
    |||||| ||||||||||||||||||||| |||||| || |||||||    
T  25910992 aaaatctcaacttcgtgaaagttagggggcgaaaactgctattaag 25911037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 26702679 - 26702716
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaatt 129  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  26702679 caaaatcgcaacttcgtaaaagttaggggacaaaaatt 26702716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 26972412 - 26972449
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaatt 129  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  26972412 caaaatcgcaacttcgtaaaagttaggggacaaaaatt 26972449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 35166558 - 35166607
Alignment:
Q  92 caaaatcgcaacttcgtgaaagtta-ggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||| |||| |||||| || |||||||||    
T  35166558 caaaatcgcaacttcgtgaaagttaggggggcgaaaactgctattaagcc 35166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 20512465 - 20512513
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||| | | |||||| || |||||||||    
T  20512465 caaaatcgcaacttcgtgaaagttaagaggcgaaaactgctattaagcc 20512513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 20228280 - 20228226
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||    
T  20228280 tcaaaatcgcaacttcgtaaaagttaggagacgaaaactgttattaagccaaaaa 20228226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 6807431 - 6807491
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaattttat 151  Q
    ||||||| ||||||| | |||||||||||||| ||||||| ||||||||| |||| |||||    
T  6807431 tcaaaattgcaactttgggaaagttaggggactaaaattgctattaagccaaaaaatttat 6807491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 9762465 - 9762513
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||| ||||||||| | ||||||||| |||||||||    
T  9762465 caaaatcgcaacttcgtaaaagttaggtggcgaaaattgctattaagcc 9762513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 17070955 - 17070907
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||| ||| |||||| || |||||||||    
T  17070955 caaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcc 17070907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 17577317 - 17577365
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||| ||| |||||| || |||||||||    
T  17577317 caaaatcgcaacttcgtgaaagttaaggggcgaaaactgctattaagcc 17577365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 45457017 - 45456969
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||| ||||||||| ||||||||||| |||||| |||||||||    
T  45457017 gatcaaaatcacaacttcgtaaaagttagggggcgaaaactgttattaa 45456969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 26824097 - 26824126
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttagggg 120  Q
    ||||||||||||||||||||||||||||||    
T  26824097 tcaaaatcgcaacttcgtgaaagttagggg 26824126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 41487249 - 41487200
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||||||| || |||| |||||| || |||||||||    
T  41487249 tcaaaatcgcaacttcgtgaaaattcgggggcgaaaactgctattaagcc 41487200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 25144207 - 25144251
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    ||||||||||||||||||| |||||| | ||||||||| ||||||    
T  25144207 aaaatcgcaacttcgtgaatgttaggaggcgaaaattgctattaa 25144251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 1377472 - 1377517
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1377472 caaaatcgcaacttcgtgaaagttaggggacgaaaactgatattaa 1377517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 1385220 - 1385265
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1385220 caaaatcgcaacttcgtgaaagttaggggacgaaaactgatattaa 1385265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 8223807 - 8223762
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaag 138  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||    
T  8223807 aaaatcgcaacttcgtgaaagttaggagacaaaaattgttattaag 8223762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 238985 - 238925
Alignment:
Q  85 aggagatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| || ||||||||| ||||    
T  238985 aggaggtcaaaatcgcaacttcgtgaaaattagggggcgaaaactgctattaagcctaaaa 238925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 3579643 - 3579595
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||    
T  3579643 caaaatcgcaacttcgtgaaagttaagggacgaaaactgctattaagcc 3579595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 5003138 - 5003089
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||| | ||||||||||| |||||| ||||||||||||    
T  5003138 tcaaaatcgcaacttcttaaaagttagggggcgaaaactgttattaagcc 5003089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 12766480 - 12766528
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||||||||||||||  ||||| || |||||||||    
T  12766480 caaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaagcc 12766528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 28011390 - 28011436
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaag 138  Q
    |||||||||||||||||||||||||||||  ||||| || |||||||    
T  28011390 caaaatcgcaacttcgtgaaagttagggggtgaaaactgctattaag 28011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 18030985 - 18030957
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttagggg 120  Q
    |||||||||||||||||||||||||||||    
T  18030985 caaaatcgcaacttcgtgaaagttagggg 18030957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 39642248 - 39642200
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||    
T  39642248 caaaatcgcaacttcgtgaaagttagggggcgaaaactgctattaagcc 39642200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 27864225 - 27864187
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaa 127  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  27864225 gatcaaaatcgcaacttcgtgaaagttaggagacgaaaa 27864187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 25486479 - 25486526
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||||||||||||| | |||| || |||||||||    
T  25486479 aaaatcgcaacttcgtgaaagttagggggcaaaaactgctattaagcc 25486526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 16874553 - 16874511
Alignment:
Q  95 aatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||    
T  16874553 aatcgcaacttcgtaaaagttagggggcgaaaattgctattaa 16874511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 18632605 - 18632651
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaag 138  Q
    ||||||||||||||||| ||||||||||| |||||| || |||||||    
T  18632605 caaaatcgcaacttcgtaaaagttagggggcgaaaactgctattaag 18632651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 25085448 - 25085394
Alignment:
Q  91 tcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    |||||||||||||||  ||||||||||||| |||||| || ||||||||| ||||    
T  25085448 tcaaaatcgcaactttatgaaagttagggggcgaaaactgctattaagcctaaaa 25085394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 5287298 - 5287250
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||||||||||| ||| |||| | ||| ||||||||    
T  5287298 caaaatcgcaacttcgtgaaagttaagggccgaacactgtaattaagcc 5287250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 23220827 - 23220883
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaattt 148  Q
    |||||||| |||||||| ||||||||||| |||||| || ||| ||||| |||||||    
T  23220827 caaaatcgtaacttcgtaaaagttagggggcgaaaactgctatcaagcctaaaattt 23220883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 41915785 - 41915841
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagccgaaaa 145  Q
    |||||||||||||||||| |||||  |||||||| |||| || ||||||||| ||||    
T  41915785 gatcaaaatcgcaacttcttgaaatataggggaccaaaactgctattaagcctaaaa 41915841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 46573093 - 46573141
Alignment:
Q  92 caaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    ||||||||||||||||| |||||||| |||| |||| || |||||||||    
T  46573093 caaaatcgcaacttcgtaaaagttagaggacaaaaactgctattaagcc 46573141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 46123 - 46076
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaagcc 140  Q
    |||||||||||||||||||||||||||| |||||| || ||| |||||    
T  46123 aaaatcgcaacttcgtgaaagttagggggcgaaaactgctataaagcc 46076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 9600 - 9629
Alignment:
Q  89 gatcaaaatcgcaacttcgtgaaagttagg 118  Q
    ||||||||||||||||||||||||||||||    
T  9600 gatcaaaatcgcaacttcgtgaaagttagg 9629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 203441 - 203484
Alignment:
Q  93 aaaatcgcaacttcgtgaaagttaggggacgaaaattgttattaa 137  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||    
T  203441 aaaatcgcaatttcgtgaaagttagggga-gaaaattgctattaa 203484  T

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