View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_4 (Length: 551)
Name: NF5601_low_4
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 534
Target Start/End: Original strand, 4254277 - 4254793
Alignment:
| Q |
22 |
ccaagtgtgtcgagtctgttgatactttctatttgtttctcatactaaacaatacgccatgggtccttcctttttccttttgaaaaacttggcttaaaac |
121 |
Q |
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| T |
4254277 |
ccaagtgtgttgagtctggtgatactttctatttgtttctcatactaaacaatacgccatgtgtccttcctttttccttttgaaaaacttggcttaaaac |
4254376 |
T |
|
| Q |
122 |
atagaggaaacaaattgtaggttcttttttcttgttctatttattgatctgtttctttctttctgcaactaaagagatgtttgtctcttttgcatcattc |
221 |
Q |
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| T |
4254377 |
agagaggaaacaaattgtaggttcttttctcttgttctatttattgatctgtttctttctttctgcaactaaagagatgtttgtctcttttgcatcattc |
4254476 |
T |
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| Q |
222 |
catagttttctgtctgcaacttaatcaagtcagtcacagatacaccgtgtaggaaggcattgttaagataatttgttttgaaatcannnnnnnagcaatc |
321 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
4254477 |
catagttttctgtcagcaacttaatcaagtcagtcacagatacaccgtgtaggaaggcattgttaagataatttgttttcaaatcatttttttagcaatc |
4254576 |
T |
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| Q |
322 |
ttatatcacttcaagcaaggagttgtgtcaatttgaaacatcaattcatttgaattattgagaaacaacatattaattatactattttaacactcattca |
421 |
Q |
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| T |
4254577 |
ttatatcacttcaagcaaggagttgtgtcaatttgaaacatcaattcatttgaattattgagaaacaacatattaattatactattttaacactcattca |
4254676 |
T |
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| Q |
422 |
taaaaagggaacaaattgtaggttctggccgtgcacaatgaaggattaggaaatggggtaatatttaccaata----atttatatataatataaaaaaca |
517 |
Q |
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| T |
4254677 |
taaaaagggaacaaattgtaggttctggccgtgcaaaatgaaggatttagaaatggggtaatatttacctataatttatttatatataatatcaaaaaca |
4254776 |
T |
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| Q |
518 |
taacaaactgtaggatg |
534 |
Q |
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| T |
4254777 |
taacaaactgtaggatg |
4254793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 132 - 274
Target Start/End: Complemental strand, 4269436 - 4269294
Alignment:
| Q |
132 |
caaattgtaggttcttttttcttgttctatttattgatctgtttctttctttctgcaactaaagagatgtttgtctcttttgcatcattccatagttttc |
231 |
Q |
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| T |
4269436 |
caaattgtaggttcttttttcttgttctatttattgatctgtttctttctttctgcacctaaagagatgtttgtctcttttacatcattccatggttttc |
4269337 |
T |
|
| Q |
232 |
tgtctgcaacttaatcaagtcagtcacagatacaccgtgtagg |
274 |
Q |
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| T |
4269336 |
tgtatgcaatttaatcaagtcagtcatagatacaacgtgtagg |
4269294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 404 - 523
Target Start/End: Complemental strand, 4268566 - 4268451
Alignment:
| Q |
404 |
tattttaacactcattcataaaaagggaacaaattgtaggttctggccgtgcacaatgaaggattaggaaatggggtaatatttaccaataatttatata |
503 |
Q |
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| T |
4268566 |
tattttaacactcattcataaaaagggaacaaattgtaggttctggccgtgcaaagtgacggatttagaaacggggcaatatttacctataatt----ta |
4268471 |
T |
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| Q |
504 |
taatataaaaaacataacaa |
523 |
Q |
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| T |
4268470 |
taatataaaaaacataacaa |
4268451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 4269061 - 4268971
Alignment:
| Q |
318 |
aatcttatatcacttcaagcaaggagttgtgtcaatttgaaacatca---attcatttgaattattgagaaacaacatattaattatacta |
405 |
Q |
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| T |
4269061 |
aatcttatatcacaaaaagcaaggacttgtatcaatttcaaacatcatcaattcatttgaattgatgagaaacaacatattaattatacta |
4268971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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