View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_low_5 (Length: 551)

Name: NF5601_low_5
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_low_5
NF5601_low_5
[»] chr5 (5 HSPs)
chr5 (12-222)||(911882-912092)
chr5 (290-501)||(10826935-10827143)
chr5 (413-533)||(42449833-42449964)
chr5 (494-533)||(10826881-10826920)
chr5 (404-460)||(23062294-23062350)
[»] chr8 (1 HSPs)
chr8 (290-533)||(44119227-44119483)
[»] chr1 (9 HSPs)
chr1 (300-501)||(31385319-31385520)
chr1 (290-501)||(27108945-27109158)
chr1 (440-501)||(42465213-42465274)
chr1 (300-401)||(42465777-42465878)
chr1 (494-533)||(31385535-31385574)
chr1 (413-462)||(15292714-15292763)
chr1 (494-533)||(27108891-27108930)
chr1 (497-533)||(15292610-15292646)
chr1 (497-533)||(42058456-42058492)
[»] chr4 (1 HSPs)
chr4 (497-533)||(31302477-31302513)
[»] chr2 (3 HSPs)
chr2 (494-533)||(29899353-29899392)
chr2 (409-466)||(26170507-26170563)
chr2 (409-466)||(19507918-19507976)
[»] chr6 (1 HSPs)
chr6 (290-433)||(31858442-31858588)
[»] chr7 (2 HSPs)
chr7 (400-442)||(42013709-42013751)
chr7 (410-442)||(34195214-34195246)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 912092 - 911882
Alignment:
Q  12 agagagggtgcaaatagaaagagcgagttttgaaaggagggtgttggtgttttcgggggttgtgttggagtggaggatttgtgcatggatttgtttaagg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  912092 agagagggtgcaaatagaaagagcgagttttgaaaggagggtgttggtgttttcgggggttgtgttggagtggaggatttgtgcatggatttgtttaagg 911993  T
Q  112 tgagaaagtgttgtggaagatgaaagtgttgttaatagttgaggatgtgttgttatgcgattgtgtgtatgggacatggtggtcattgccatttcgatag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  911992 tgagaaagtgttgtggaagatgaaagtgttgttaatagttgaggatgtgttgttatgcgattgtgtgtgtgggacatggtggtcattgccatttcgatag 911893  T
Q  212 ccatactcaat 222  Q
    |||||||||||    
T  911892 ccatactcaat 911882  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 290 - 501
Target Start/End: Complemental strand, 10827143 - 10826935
Alignment:
Q  290 agaaaattgctttt--gacatgagaaacttcacattgatacaaggaaattatattagggcctctcatgatagttaactattattgagaaaatcgtcggca 387  Q
    ||||||||||||||  |||||||||||||||| ||||| ||||| ||||||  |||||||| ||   | ||||||||||   ||||||||| || ||| |    
T  10827143 agaaaattgcttttttgacatgagaaacttcatattgacacaagtaaattacgttagggcccctggcggtagttaactaccgttgagaaaaccgccggta 10827044  T
Q  388 attaactgttgttggttccaacggtagttaactaccgctgcattctgtatcttaagaacgcagaaaacttccagtttctggatacaagttcaaaacaaca 487  Q
     |||||||  | |||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||     ||| ||||||||||||||||||    
T  10827043 gttaactgccgctggtcccagcggcagttaactaccgctgcattctgtatcttaagaacgcataaaacttcca-----tggttacaagttcaaaacaaca 10826949  T
Q  488 caaaatcaacttca 501  Q
    ||||| ||||||||    
T  10826948 caaaaccaacttca 10826935  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 413 - 533
Target Start/End: Complemental strand, 42449964 - 42449833
Alignment:
Q  413 agttaactaccgctgcattctgtatcttaagaacgcagaaaacttccagtttctggatacaagttcaaaacaacacaaaa-----------tcaacttca 501  Q
    |||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||            ||||||||    
T  42449964 agttaactgccgttgcattctgtatcttaagaatgcaaaaaacttccagtttctggttacaagttcaaaacaacacaaaaccaacttcaccccaacttca 42449865  T
Q  502 attgcacggatttgagccaaatttcttcaagt 533  Q
    |||||||||||||||| |||||||||||||||    
T  42449864 attgcacggatttgagtcaaatttcttcaagt 42449833  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 533
Target Start/End: Complemental strand, 10826920 - 10826881
Alignment:
Q  494 caacttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10826920 caacttcaattgctcggatttgagccaaatttcttcaagt 10826881  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 460
Target Start/End: Original strand, 23062294 - 23062350
Alignment:
Q  404 tccaacggtagttaactaccgctgcattctgtatcttaagaacgcagaaaacttcca 460  Q
    ||||||||| || ||||  || |||||||||||| ||||||||||||||||||||||    
T  23062294 tccaacggttgtaaactgtcgttgcattctgtattttaagaacgcagaaaacttcca 23062350  T

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Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 533
Target Start/End: Complemental strand, 44119483 - 44119227
Alignment:
Q  290 agaaaattgctttt--gacatgagaaacttcacattgatacaaggaaattatattagggcctctcatgatagttaactattattgagaaaatcgtcggca 387  Q
    ||||||||||||||  ||||| ||||| |||||||||  ||||| ||||||  || ||||| ||   | ||||||||||  |||||  ||| ||||||||    
T  44119483 agaaaattgcttttttgacataagaaatttcacattgccacaagtaaattacgttggggcccctggcggtagttaactaccattgaagaaaccgtcggca 44119384  T
Q  388 attaactgttgttggttccaacggtagttaactaccgctgcattctgtatcttaagaacgcagaaaacttccagtttctggatacaagttcaaaacaaca 487  Q
     |||||||  |||||| ||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44119383 gttaactgccgttggtcccagcggtagttaactatcgctgcattatgtattttaagaacgcagaaaacttccagtttctggttacaagttcaaaacaaca 44119284  T
Q  488 caaaa-----------tcaacttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    |||||            |||||||||||||||||||||||||||| |||||||||||    
T  44119283 caaaaccaacttcatcccaacttcaattgcacggatttgagccaactttcttcaagt 44119227  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 300 - 501
Target Start/End: Original strand, 31385319 - 31385520
Alignment:
Q  300 ttttgacatgagaaacttcacattgatacaaggaaattatattagggcctctcatgatagttaactattattgagaaaatcgtcggcaattaactgttgt 399  Q
    |||||||||||||||||||||||||| ||||| ||||||  |||||| | ||   | ||||||||||   ||||||||| || || || |||||||        
T  31385319 ttttgacatgagaaacttcacattgacacaagtaaattacgttagggtccctggcggtagttaactaccgttgagaaaaccgccgacagttaactgccac 31385418  T
Q  400 tggttccaacggtagttaactaccgctgcattctgtatcttaagaacgcagaaaacttccagtttctggatacaagttcaaaacaacacaaaatcaactt 499  Q
    |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  31385419 tggtcccagcggtacttaactaccgctgcattctgtatcttaagaacgcagaaaacttttagtttctggttacaagttcaaaacaacacaaaaccaactt 31385518  T
Q  500 ca 501  Q
    ||    
T  31385519 ca 31385520  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 290 - 501
Target Start/End: Complemental strand, 27109158 - 27108945
Alignment:
Q  290 agaaaattgctttt--gacatgagaaacttcacattgatacaaggaaattatattagggcctctcatgatagttaactattattgagaaaatcgtcggca 387  Q
    ||||||||||||||  |||||||||||||||||||| | ||||| ||||||  |||||||| || |   ||||||||||   ||||||||| || |||||    
T  27109158 agaaaattgcttttttgacatgagaaacttcacattcacacaagtaaattacgttagggcccctgacagtagttaactaccgttgagaaaaccgccggca 27109059  T
Q  388 attaactgttgttggttccaacggtagttaactaccgctgcattctgtatcttaagaacgcagaaaacttccagtttctggatacaagttcaaaacaaca 487  Q
     |||||||  | |||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  | | |||||||||||||||||     
T  27109058 gttaactgccgctggtcccagcggtagttaactaccgctgtattctgtatcttaagaacgcaaaaaacttccagttcatagttacaagttcaaaacaact 27108959  T
Q  488 caaaatcaacttca 501  Q
    ||||  ||||||||    
T  27108958 caaatccaacttca 27108945  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 440 - 501
Target Start/End: Complemental strand, 42465274 - 42465213
Alignment:
Q  440 taagaacgcagaaaacttccagtttctggatacaagttcaaaacaacacaaaatcaacttca 501  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  42465274 taagaatgcataaaacttccagtttctggttacaagttcaaaacaacacaaaaccaacttca 42465213  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 401
Target Start/End: Complemental strand, 42465878 - 42465777
Alignment:
Q  300 ttttgacatgagaaacttcacattgatacaaggaaattatattagggcctctcatgatagttaactattattgagaaaatcgtcggcaattaactgttgt 399  Q
    |||||||||||||||||||||||||| ||||| ||||||  ||||||||||| |   ||||||||||   ||||||||||||  |||| |||||||| ||    
T  42465878 ttttgacatgagaaacttcacattgacacaagtaaattacgttagggcctctgacattagttaactaccgttgagaaaatcggtggcagttaactgtcgt 42465779  T
Q  400 tg 401  Q
    ||    
T  42465778 tg 42465777  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 533
Target Start/End: Original strand, 31385535 - 31385574
Alignment:
Q  494 caacttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31385535 caacttcaattgcacggatttgagccaaatttcttcaagt 31385574  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 15292763 - 15292714
Alignment:
Q  413 agttaactaccgctgcattctgtatcttaagaacgcagaaaacttccagt 462  Q
    |||||||| ||| |||||||||||| ||||||| ||||||||||||||||    
T  15292763 agttaactgccgttgcattctgtatgttaagaatgcagaaaacttccagt 15292714  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 494 - 533
Target Start/End: Complemental strand, 27108930 - 27108891
Alignment:
Q  494 caacttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  27108930 caacttcaaatgcgcggatttgagccaaatttcttcaagt 27108891  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 533
Target Start/End: Complemental strand, 15292646 - 15292610
Alignment:
Q  497 cttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  15292646 cttcaattgcaaggatttgagccaaatttgttcaagt 15292610  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 533
Target Start/End: Complemental strand, 42058492 - 42058456
Alignment:
Q  497 cttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    |||||||| |||||||||||||||||||| |||||||    
T  42058492 cttcaattacacggatttgagccaaatttgttcaagt 42058456  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 533
Target Start/End: Original strand, 31302477 - 31302513
Alignment:
Q  497 cttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    |||||||||||||||||||||||||||||||||||||    
T  31302477 cttcaattgcacggatttgagccaaatttcttcaagt 31302513  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 494 - 533
Target Start/End: Original strand, 29899353 - 29899392
Alignment:
Q  494 caacttcaattgcacggatttgagccaaatttcttcaagt 533  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  29899353 caacttcaattgtacggatttgagccaaatttcttcaagt 29899392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 26170507 - 26170563
Alignment:
Q  409 cggtagttaactaccgctgcattctgtatcttaagaacgcagaaaacttccagtttct 466  Q
    |||||||||||| |||||||  |||||||||||||||| || ||||| ||||||||||    
T  26170507 cggtagttaactgccgctgcgatctgtatcttaagaacaca-aaaacctccagtttct 26170563  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 19507918 - 19507976
Alignment:
Q  409 cggtagttaactaccgctgcattctgtatctta--agaacgcagaaaacttccagtttct 466  Q
    |||||||||||||||| |||||| |||||||||  ||||||||| |||| ||||||||||    
T  19507918 cggtagttaactaccgttgcattatgtatcttaatagaacgcag-aaacctccagtttct 19507976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 433
Target Start/End: Original strand, 31858442 - 31858588
Alignment:
Q  290 agaaaattgctttt--gacatgagaaacttcacattgatacaaggaaattatattagggcctctcatgatagttaactattattgagaaaatcgtcggca 387  Q
    ||||||||||||||  |||||||||||||||||||||| ||||| || |||  | |||||| ||   | ||||||||||   ||| ||||| || |||||    
T  31858442 agaaaattgcttttttgacatgagaaacttcacattgacacaagtaatttacgtaagggcccctggcggtagttaactaccgttgggaaaaccgccggca 31858541  T
Q  388 -attaactgttgttggttccaacggtagttaactaccgctgcattct 433  Q
      |||||||  | |||| |||||| ||||||||||| ||||||||||    
T  31858542 gtttaactgccgctggtcccaacgatagttaactactgctgcattct 31858588  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 442
Target Start/End: Original strand, 42013709 - 42013751
Alignment:
Q  400 tggttccaacggtagttaactaccgctgcattctgtatcttaa 442  Q
    |||| ||| |||||||||||||||| |||||||||||||||||    
T  42013709 tggtgccagcggtagttaactaccgttgcattctgtatcttaa 42013751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 34195214 - 34195246
Alignment:
Q  410 ggtagttaactaccgctgcattctgtatcttaa 442  Q
    ||||||||||||||| |||||||||||||||||    
T  34195214 ggtagttaactaccgttgcattctgtatcttaa 34195246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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