View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5601_low_6 (Length: 498)

Name: NF5601_low_6
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5601_low_6
NF5601_low_6
[»] chr6 (3 HSPs)
chr6 (118-498)||(15702234-15702614)
chr6 (26-64)||(21072523-21072561)
chr6 (26-64)||(26522467-26522505)
[»] chr7 (1 HSPs)
chr7 (31-64)||(4340127-4340160)
[»] chr2 (2 HSPs)
chr2 (31-64)||(2429016-2429049)
chr2 (31-64)||(44488038-44488071)
[»] chr8 (1 HSPs)
chr8 (28-64)||(8910009-8910045)
[»] chr5 (2 HSPs)
chr5 (32-64)||(16752530-16752562)
chr5 (37-85)||(19842618-19842665)
[»] chr3 (1 HSPs)
chr3 (32-64)||(28266717-28266749)


Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 118 - 498
Target Start/End: Original strand, 15702234 - 15702614
Alignment:
Q  118 gttgtgcacctccctaggaatggatcagatcacgcccctcttctgtttgaattagaagcttgtaccgatgaaaatcagaggaggagagtgcatttattta 217  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15702234 gttgtgcacctccctaggaatggttcagatcacgcccctcttctgtttgatttagaagcttgtactgatgaaaatcagaggaggagagtgcatttattta 15702333  T
Q  218 gatttgaagaggcttgggttaaggatgatagatgtgaagatttaattaaagaagcctggcgcagaacaccaaatcaatgcacagagaagctgcaggctgt 317  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15702334 gatttgaagaggcttgggttaaggatgatagatgtgaggatttaattaaagaagcctggcgcagaacaccaaatcaatgcacagagaagctgcagactgt 15702433  T
Q  318 tcagacaattgatgagacttttaaggaatatagaacaggggctgttagcaaagaaataaagagaattgaagagctgctcaaagacaccaatctgtggtca 417  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||    
T  15702434 tcagacaattgatgagacttttaaggaatatagaacatgggctgttagcaaagaaataaagagagttgaagagctgcttaaagacaccaatttttggtca 15702533  T
Q  418 tctgaaccgacatcagttcaagcttacaagacactggaacagcagagagacaacctgatgagaacagatgaggttttgtgg 498  Q
    |||||||||||||||||||||||||||||| |||| | | ||||||||||||||||| ||||||||||| |||||||||||    
T  15702534 tctgaaccgacatcagttcaagcttacaaggcactagtaaagcagagagacaacctgttgagaacagataaggttttgtgg 15702614  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 21072523 - 21072561
Alignment:
Q  26 ttcatgtgagattagttcagttggtaaggacaatgcata 64  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  21072523 ttcatgtgagcttagttcatttggtaaggacaatgcata 21072561  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 26522467 - 26522505
Alignment:
Q  26 ttcatgtgagattagttcagttggtaaggacaatgcata 64  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  26522467 ttcatgtgagcttagctcagttggtaaggacaatgcata 26522505  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 4340127 - 4340160
Alignment:
Q  31 gtgagattagttcagttggtaaggacaatgcata 64  Q
    |||||||||| |||||||||||||||||||||||    
T  4340127 gtgagattagctcagttggtaaggacaatgcata 4340160  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 2429016 - 2429049
Alignment:
Q  31 gtgagattagttcagttggtaaggacaatgcata 64  Q
    ||||| ||||||||||||||||||||||||||||    
T  2429016 gtgagcttagttcagttggtaaggacaatgcata 2429049  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 44488071 - 44488038
Alignment:
Q  31 gtgagattagttcagttggtaaggacaatgcata 64  Q
    ||||| ||||||||||||||||||||||||||||    
T  44488071 gtgagtttagttcagttggtaaggacaatgcata 44488038  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 8910045 - 8910009
Alignment:
Q  28 catgtgagattagttcagttggtaaggacaatgcata 64  Q
    |||||||| |||| |||||||||||||||||||||||    
T  8910045 catgtgagcttagctcagttggtaaggacaatgcata 8910009  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 16752562 - 16752530
Alignment:
Q  32 tgagattagttcagttggtaaggacaatgcata 64  Q
    |||| ||||||||||||||||||||||||||||    
T  16752562 tgagcttagttcagttggtaaggacaatgcata 16752530  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 19842665 - 19842618
Alignment:
Q  37 ttagttcagttggtaaggacaatgcatatgcaagatctagagttcgaat 85  Q
    |||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  19842665 ttagttcagttgataag-acaatatatatgcaagatctagagttcgaat 19842618  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 28266717 - 28266749
Alignment:
Q  32 tgagattagttcagttggtaaggacaatgcata 64  Q
    |||| ||||||||||||||||||||||||||||    
T  28266717 tgaggttagttcagttggtaaggacaatgcata 28266749  T

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