View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5601_low_8 (Length: 457)
Name: NF5601_low_8
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Original strand, 33998569 - 33999007
Alignment:
| Q |
9 |
gaagaaaataaatgaggaatttacaaatctggataaagaggtaaactgtttggaaagtgnnnnnnntagtatcgtgaaaacaagagagaaatcactaata |
108 |
Q |
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| T |
33998569 |
gaagaaaataaatgaggaatttacaaatctggataaagaggtaaacagtttggaaagtgaaaaaaatagtatcgtgaaaacaagagagaaatcactaata |
33998668 |
T |
|
| Q |
109 |
attttcactcacttgttgtaacagtttctcccttatttccgc--gacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgata |
206 |
Q |
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| T |
33998669 |
attttcactcacttgttctaacagtttctcccttatttccgcaagacttattattttttggcatgtctcttttcttttatatcttgttcaacatttgatg |
33998768 |
T |
|
| Q |
207 |
gtctatccaaggtgagacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttgcacactgtattgattgcattat |
306 |
Q |
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| T |
33998769 |
gtctatccaaggtgggacttataatttacaacacttcaacaatgttttgtttggttcaaaggtttctatacttacttgcacactgtattgattgcattat |
33998868 |
T |
|
| Q |
307 |
tgcatttcaacctagtgagtggctggtctgcaagaggattttacctcctaaattaggacaaaaaatacctctttctatcttttccattctcatgtagggt |
406 |
Q |
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| T |
33998869 |
tgcatttcaacctagggagtggctggtctgcaagaggattttacctcctaaattaggacaaaaaacacctctttctatcttttccattctcatttagggt |
33998968 |
T |
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| Q |
407 |
atggtggctggatatatgggcgattcatgagtttatttt |
445 |
Q |
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| T |
33998969 |
atggtggctggatatatgggcgattcatgagtttatttt |
33999007 |
T |
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