View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5601_low_9 (Length: 453)
Name: NF5601_low_9
Description: NF5601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5601_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 31669808 - 31670226
Alignment:
| Q |
16 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaatta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31669808 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaatta |
31669907 |
T |
|
| Q |
115 |
tagtgaacattatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31669908 |
tagtgaacattatgccagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
31670007 |
T |
|
| Q |
215 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31670008 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
31670107 |
T |
|
| Q |
315 |
cagattccttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
414 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31670108 |
cagattccttgcctgaattataggtgttttacgaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
31670207 |
T |
|
| Q |
415 |
tagttcctgattcaatttc |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31670208 |
tagttcctgattcaatttc |
31670226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 35986541 - 35986959
Alignment:
| Q |
16 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaatta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35986541 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaatta |
35986640 |
T |
|
| Q |
115 |
tagtgaacattatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35986641 |
tagtgaacattatgcctgtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
35986740 |
T |
|
| Q |
215 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35986741 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
35986840 |
T |
|
| Q |
315 |
cagattccttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
414 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35986841 |
cagattccttgcctgaattataggtgttttacgaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
35986940 |
T |
|
| Q |
415 |
tagttcctgattcaatttc |
433 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
35986941 |
tagttcctgtttcaatttc |
35986959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 36007949 - 36008367
Alignment:
| Q |
16 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaatta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36007949 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaatta |
36008048 |
T |
|
| Q |
115 |
tagtgaacattatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36008049 |
tagtgaacattatgcctgtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
36008148 |
T |
|
| Q |
215 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36008149 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
36008248 |
T |
|
| Q |
315 |
cagattccttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
414 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36008249 |
cagattccttgcctgaattataggtgttttacgaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
36008348 |
T |
|
| Q |
415 |
tagttcctgattcaatttc |
433 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
36008349 |
tagttcctgtttcaatttc |
36008367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 33047717 - 33047299
Alignment:
| Q |
16 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaa-gttacgcttgtttttgttggcactggtttctttaatta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33047717 |
atgaatacgaaggtgaagacttggaagtgttgatgaataactattcgacttgccaagttaaagttacgcttgtttttgttggcactggtttctttaatta |
33047618 |
T |
|
| Q |
115 |
tagtgaacattatgctagtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33047617 |
tagtgaacattatgccggtgtttgtaatgtacacatgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtga |
33047518 |
T |
|
| Q |
215 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33047517 |
atctaaagctgtatagtcatgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttcatccataagaagtg |
33047418 |
T |
|
| Q |
315 |
cagattccttgcctgaattatcggtgttttacaaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
414 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33047417 |
cagattccttgcctgaattataggtgttttacgaattatttttaattgattttgaaataacatgaatggggaaaggggaaatcgatttactgactttttc |
33047318 |
T |
|
| Q |
415 |
tagttcctgattcaatttc |
433 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
33047317 |
tagttcctggttcaatttc |
33047299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 135 - 301
Target Start/End: Original strand, 32043286 - 32043454
Alignment:
| Q |
135 |
tttgtaatgtaca--catgatttaaatttatagtcttggcttcttgataattaattattggatgtggtagttagtcatgtgaatctaaagctgtatagtc |
232 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32043286 |
tttgtaatgtacagacatgatttaaatttatagtcttggcttcttgacaattaattattggctgtggtagttagtcatgtgaatccaaagctgtatagtc |
32043385 |
T |
|
| Q |
233 |
atgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32043386 |
atgtttatggtttaaattaaaatgagatgcaatgtggatttatacaaatctaggctttcttcaagttca |
32043454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University