View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602-Insertion-1 (Length: 266)
Name: NF5602-Insertion-1
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 24362238 - 24362492
Alignment:
| Q |
7 |
aatcagaagactggaaggaggccaccattagattcccctcgacaacgtaagaaagttagaggtatggctttcattttctgtttcttctttcattatatta |
106 |
Q |
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| T |
24362238 |
aatcaaaagactggaaggaggccaccattagattcccctcgaccacgtaagaaagttagaggtatggctttcattttctgtttcttctttcattatatta |
24362337 |
T |
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| Q |
107 |
acattcaatttcatggtgccaaacatttcatcttacttagttacttgatgttgtttaataaaaagcttagacttgaaaattgaaaaacacccaagtatta |
206 |
Q |
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| T |
24362338 |
acattcaatttcatggtgccaaacatttcatcttacttagttacttgatgttttttaat-aaacgc-tagacttg-aaattg-aaaaca-ccaagtatta |
24362432 |
T |
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| Q |
207 |
tatgaggtttcaaattttgaacatgct-ctctgcgagtttaactatttgttttatatttca |
266 |
Q |
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| T |
24362433 |
tatgagg-ttcaaattctgaacatgctcctctgagagtttaactatttgttttatatttca |
24362492 |
T |
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