View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602-Insertion-10 (Length: 331)
Name: NF5602-Insertion-10
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 331
Target Start/End: Complemental strand, 30164165 - 30163842
Alignment:
| Q |
8 |
tcaacgacgtctacaaagatcttctaagcatcggttacgtttccacatttggcatagaatgatataagggaattttgtattgaaagatcatattccaggt |
107 |
Q |
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| T |
30164165 |
tcaacgacgtctacaaagatcttgtaagcatcggttacgtttccacatttggcatagaatgatataagggaattttgtattgaaagatcatattccaggt |
30164066 |
T |
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| Q |
108 |
tcatcttcagaacatgggaatggatctgaagcccttcattcggtgccaccaaagaagccgaagcggcaagaacactgctaatagttaaaggattaggctt |
207 |
Q |
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| T |
30164065 |
tcatcttcagaacatgggaatggatctgaagcccttcattcagtgccaccaaagaagccgaagcggcaagaacactgctaatagttaaaggattaggctt |
30163966 |
T |
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| Q |
208 |
acacccttcccggttcatccgaacatacctacacaaagcttcctcgtactcctcattactcacaaaaccagatataagaactgcccaaacaaaatcatct |
307 |
Q |
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| T |
30163965 |
acatccttcccggttcatccgaacataccaacacaaagcttcctcgtactcctcattactcacaaaaccagatataagaactgtccaaacaaaatcatct |
30163866 |
T |
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| Q |
308 |
ttttgtttcaacgtttcaaacaat |
331 |
Q |
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| T |
30163865 |
ttttctttcaacgtatcaaacaat |
30163842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 30003722 - 30003401
Alignment:
| Q |
8 |
tcaacgacgtctacaaagatcttctaagcatcggttacgtttccacatttggcatagaatgatataagggaattttgtattgaaagatcatattccaggt |
107 |
Q |
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||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30003722 |
tcaacaacgtctacgaagatcttgtaagcatcggttacgtttccacatttggcatagaatgatataagtgaattttgtattgaaagatcatattccaggt |
30003623 |
T |
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| Q |
108 |
tcatcttcagaacatgggaatggatctgaagcccttcattcggtgccaccaaagaagccgaagcggcaagaacactgctaatagttaaaggattaggctt |
207 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
30003622 |
tcatcttcagaacatgtgaatgaatctgaagcccttcattcagtgccaccagagaagccgaagcggaaagaacactgctaatagttaaaggattaggcct |
30003523 |
T |
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| Q |
208 |
acacccttcccggttcatccgaacatacctacacaaagcttcctcgtactcctcattactcacaaaaccagatataagaactgcccaaacaaaatcatct |
307 |
Q |
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| T |
30003522 |
gcattgttccctgctcatccgaacaaaccaatgcaaagcttcctcatactcctcattactcacaaaaccagatataagaactgtccaaacaaaatcatct |
30003423 |
T |
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| Q |
308 |
ttttgtttcaacgtttcaaaca |
329 |
Q |
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|| | ||||||||| ||||||| |
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| T |
30003422 |
ttctctttcaacgtatcaaaca |
30003401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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