View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602-Insertion-2 (Length: 1040)
Name: NF5602-Insertion-2
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 43 - 462
Target Start/End: Original strand, 31888325 - 31888744
Alignment:
| Q |
43 |
aaggtttacaataaggttaatcatcatatacatgtcttgcaggagtaaaatctgtggagataaaccgaaagcaaagcaaggtaacagtgaatggttttgt |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31888325 |
aaggtttacaataaggttaatcatcatatacatgtcttgcaggagtaaaatctgtggagataaaccgaaagcaaagcaaggtaacagtgaatggttttgt |
31888424 |
T |
|
| Q |
143 |
tgatccaaacatggtgttgaaaagagtaagaagcactgggaagaaaagagctgaattttggccttatgttccacaacatgttgtgacgtttcctcatgcc |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31888425 |
tgatccaaacatggtgttgaaaagagtaagaagcactgggaagaaaagagctgaattttggccttatgttccacaacatgttgtgacgtttcctcatgcc |
31888524 |
T |
|
| Q |
243 |
tcaggagtctatgataaaagggcaccagcaggacatgtgaaaaatgtgcaaacatttccagcatctattgatacagaagagaaacttatgtcttatttta |
342 |
Q |
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| T |
31888525 |
tcaggagtctatgataaaagggcaccagcaggacatgtgaaaaatgtgcaaacatttccagcatctattgatacagaagagaaacttatgtcttatttta |
31888624 |
T |
|
| Q |
343 |
gtgaagataatgttaatgcatgctccatcatgtaaccaatatatatcacatgaataactcctataaaaatttgaattaatacgaaaacatgttctttaat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31888625 |
gtgaagataatgttaatgcatgctccatcatgtaaccaatatatatcacatgaataactcctataaaaatttgaattaatacgaaaacatgttctttaat |
31888724 |
T |
|
| Q |
443 |
tttgttgcttagtattcgag |
462 |
Q |
| |
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| T |
31888725 |
tttgttgcttagtattcgag |
31888744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 534 - 954
Target Start/End: Original strand, 31888740 - 31889160
Alignment:
| Q |
534 |
tcgagttcaatttctactaaaaaagacaaaaattagagaaaattttcttattttatcctaaaccctaatttctctttctatttgtaannnnnnnnncttg |
633 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
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| T |
31888740 |
tcgagttcaatttctactaaaaaagacaaaaattagagaaaattttcttatattttcctaaaccctaatttctctttctatttgtaatttttttttcttg |
31888839 |
T |
|
| Q |
634 |
taacttttgtagatgaatcaatcattaagcaactttttcattgaactttgttgcttttcttctagctagtgtgatggagaagagtcaatgaatattgaat |
733 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31888840 |
taacttttgtagatgaatcaatcattaagcaactttttcattgaactttgttgcttttcttctagctagtgtgatggagaagagtcaatgaatattgaat |
31888939 |
T |
|
| Q |
734 |
gtacttttttgtttactcttgttattttgaactatataacttctggaaaatactatactatatagctagggtcaattattgaaccttcgtggaaaatgaa |
833 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31888940 |
gtacttttttgtttactcttgttattttgaactatataacttctggaaaatactatactatatagctagggtcaattattgaaccttcgtggaaaatgaa |
31889039 |
T |
|
| Q |
834 |
aaacgctggatcagaatcaaactttataaagtaaatagcaaaaatcaattttgaaagggttaaggga-gaatttgattcgagctgcctaccccaaaggca |
932 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
31889040 |
aaacgctggatcagaatcaaactttataaagtaaatagcaaaaatcaattttgaaagggttaagggaggaatttgattctagctgcctaccccaaaggca |
31889139 |
T |
|
| Q |
933 |
gattcgaataacgtaatgcaaa |
954 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
31889140 |
-aatcgaataacgtaatgcaaa |
31889160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 54443 - 54565
Alignment:
| Q |
90 |
aaatctgtggagataaaccgaaagcaaagcaaggtaacagtgaatggttttgttgatccaaacatggtgttgaaaagagtaagaagcactgggaagaaaa |
189 |
Q |
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|||||||||||| | ||| |||||||||||| ||| | ||| | ||||| |||||||||||||| |||||| || ||| ||| |||||||||||| || |
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| T |
54443 |
aaatctgtggaggtgaacagaaagcaaagcagggtgatagtaagtggttatgttgatccaaacaaggtgttaaagagaataaaaagcactgggaaagtaa |
54542 |
T |
|
| Q |
190 |
gagctgaattttggccttatgtt |
212 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
54543 |
gagctcaattttggccttatgtt |
54565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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