View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602-Insertion-3 (Length: 865)
Name: NF5602-Insertion-3
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 10 - 692
Target Start/End: Original strand, 29768890 - 29769570
Alignment:
| Q |
10 |
acggaggg-atttccgtcatctcacaccaccctccaccgttcattccatcagaagcataaaaactcaaacatacactcactctctcattcttcttctcag |
108 |
Q |
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| T |
29768890 |
acggagggcatttccgtcatctcataccaccctccaccgttcattccatcagaagcataaaaacttaaacatacactcgctctctcattcttcttctcag |
29768989 |
T |
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| Q |
109 |
aagcgaaatcaaaatccgttagagagagaaaacaaaaatggsagcttccgatggaagcgagtactttgaaatcggatcaatcggaagcgagagttttgcg |
208 |
Q |
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| T |
29768990 |
aagcgaaatcaaaatccgttagagagagaaaacaaaaatggcagcttccgatggaagcgagtacttcgaaatcggatcaatcggaagcgagagttttgcg |
29769089 |
T |
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| Q |
209 |
agagcgtcgaatgcagaatgggtggaggaagacgaagaggagcttcattgggcggcgctttcacgtttaccgtcgcagaaacgcatcaactttgccgtcc |
308 |
Q |
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| T |
29769090 |
agagcgtcgaatgcagaatgggtggaggaagacgaagaggagcttcattgggcggcgctttcacgtttaccgtcgcagaaacgcatcaacttcgccgtcc |
29769189 |
T |
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| Q |
309 |
tccgtgcttcatcttcccgtcaaccttcaaaggaaaatgccgccgagaatttagtcgatgtgagaaaattgaatcggtttaatcgtgaactcgtcgttaa |
408 |
Q |
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| T |
29769190 |
tccgtgcttcatcttcccgtcaaccttcaaaggaaaatgccggcgagaatttagtcgatgtgagaaaattgaatcggtttaatcgtgaactcgtcgttaa |
29769289 |
T |
|
| Q |
409 |
aaaagcactcgctacaaatgatcaagataattataagcttctctccgctgttaaagaacgcctcaataggttcgttgtccatgtctctatcatcgttata |
508 |
Q |
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| T |
29769290 |
aaaagcactcgctacaaatgatcaagataattataagcttctctccgccgttaaagaacgcctcaataggttcgttgttcatgtctctatcatcgttata |
29769389 |
T |
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| Q |
509 |
gatctttatgttaatgttgtatccggtgtctgtagctaacggtatctgtgtttatgtgatagggctggaattgaggtgccgaagattgaagttaggtata |
608 |
Q |
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| T |
29769390 |
gatctgtatgtcaatgttgtat---gtgtctgtagctaacggtatccgtgtttatgtgatagggctggaattgaggtgccgaagattgaagttaggtata |
29769486 |
T |
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| Q |
609 |
cgaatttgaccgtgaatgctgatgttctaatcggttcacgagctttaccgactctgttcaattacactcgcgatacattagagg |
692 |
Q |
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| T |
29769487 |
cgaatttgactgtgagtgctgatgttctaatcggttcacgagctttaccgactctgttcaattacactcgcgatgcattagagg |
29769570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 752 - 865
Target Start/End: Original strand, 29769648 - 29769761
Alignment:
| Q |
752 |
atgcatgtgttaatatgattatgaattggtaactaaattatgcgattgaacgcagggaattttaacgtcgttgaagttgtttagaactaaacggcattca |
851 |
Q |
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|||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769648 |
atgcatgtgtgaatatgattatgaattagtgactaaattatgcgattgaacgcagggaattttaacgtcgttgaagttgtttagaactaaacggcattca |
29769747 |
T |
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| Q |
852 |
cttactattttgga |
865 |
Q |
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|||||||||||||| |
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| T |
29769748 |
cttactattttgga |
29769761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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