View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602-Insertion-5 (Length: 795)
Name: NF5602-Insertion-5
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 8 - 785
Target Start/End: Complemental strand, 28477816 - 28477035
Alignment:
| Q |
8 |
caagcaagccatgaaagtgatatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtttt |
107 |
Q |
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| T |
28477816 |
caagcaagccatgaaggtgatatcaaatgctccacaatgggttggcccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtttt |
28477717 |
T |
|
| Q |
108 |
tgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaacggcttgagaccttcagcggctaaccctgctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
28477716 |
tgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaatggcttgagaccttcagtggctaaccctgctg |
28477617 |
T |
|
| Q |
208 |
caaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttaggccagttccaccacccattgctgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477616 |
caaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttaggccagttccaccacccattgctgc |
28477517 |
T |
|
| Q |
308 |
atgaattgccactatcttattgtccatttcagcttcctttatcaatgaatcagcaaagtactgtgtgtatgccagtgtagagggttttggcttgaactgg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477516 |
atgaattgccactatcttattgtccatttcagcttcctttatcaatgaatcagcaaagtactgtgtgtatgccagtgtagagggttttggcttgaactgg |
28477417 |
T |
|
| Q |
408 |
tggcctgtttttggatcaaacttgacaacacctgaaaatgtgtgaaagtataagcacccttatgaattgttcattataattactactttggacttaacta |
507 |
Q |
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| T |
28477416 |
tggcctgttttcggatcaaacttgacaacacctgaaaatgtgtgaaagtataagcacccttatgaattgctcattataattactacttcggacttaacta |
28477317 |
T |
|
| Q |
508 |
taagcaataaagtacatgcatatatatggtccaaatatgaactagattcatggannnnnnngcttatgtttaagtccaggggaagtatatgttaacattt |
607 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28477316 |
taagcaaaaaagtacatgcatatatatggtccaaatatgaactagatccatggatttttttgcttatgtttaagtccaggggaagtatatgttaacattt |
28477217 |
T |
|
| Q |
608 |
aaagcaat----nnnnnnntagcacattctcaccatgcattctatcagctgctgctacagctggagggtatccttttcctttctccgtaacaatatgaat |
703 |
Q |
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| T |
28477216 |
gaagcaataaaaaaaaaaatagtccattctgaccatgcattctatcagctgctgctacagctggagggtatccctttcctttctccgtaacaatatgaat |
28477117 |
T |
|
| Q |
704 |
caaaactggacccgaagctggcgttgctttcactttctcaaatatgttgactaaatcttcaatgttatgaccatccagagga |
785 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28477116 |
caaaactggacctgaagctggcgttgctttcactttctcaaatatgttgactaaatcttcaatgttatgaccatccatagga |
28477035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 8 - 785
Target Start/End: Complemental strand, 28469477 - 28468707
Alignment:
| Q |
8 |
caagcaagccatgaaagtgatatcaaaagctccacaatgagttggtccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtttt |
107 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469477 |
caagcaagccatgaaggtgatatcaaatgctccacaatgggttggcccatctgcaccaactaaaccagctctatccatcgcaaatcgaacaggtagtttt |
28469378 |
T |
|
| Q |
108 |
tgaagatcaacatcatggactacctgatcatatccacgttgtaggaatgttgaataaatagcacaaaacggcttgagaccttcagcggctaaccctgctg |
207 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28469377 |
tgaagatcaacatcatggactacctgatcatatccgcgttgtaggaatgatgaataaatagcacaaaatggcttgagaccttcagcggctaaccctgctg |
28469278 |
T |
|
| Q |
208 |
caaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttaggccagttccaccacccattgctgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28469277 |
caaatgtaacagcatgttgttcagctatgccgacatcgaaacatcggtctggaaaccttttctggaagtaatttagaccagttccaccacccattgctgc |
28469178 |
T |
|
| Q |
308 |
atgaattgccactatcttattgtccatttcagcttcctttatcaatgaatcagcaaagtactgtgtgtatgccagtgtagagggttttggcttgaactgg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469177 |
atgaattgccactatcttattgtccatttcagcttcctttatcaatgaatcagcaaagtactgtgtgtatgccagtgtagagggttttggcttgaactgg |
28469078 |
T |
|
| Q |
408 |
tggcctgtttttggatcaaacttgacaacacctgaaaatgtgtgaaagtataagcacccttatgaattgttcattataattactactttggacttaacta |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28469077 |
tggcctgtttttggatcaaacttgacaacacctgaaaatgtgtgaaagtataagcaccattatgaattgttcattataattactacttcggacttaacta |
28468978 |
T |
|
| Q |
508 |
taagcaataaagtacatgcatatatatggtccaaatatgaactagattcatggannnnnnngcttatgtttaagtccaggggaagtatatgttaacattt |
607 |
Q |
| |
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|| ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28468977 |
tatgcaataaagtacatgcatacatat-------atatgaactagattcatggatttttttgcttatgtttaagtccaggggaagtatatgttaacattt |
28468885 |
T |
|
| Q |
608 |
aaagcaatnnnnnnntagcacattctcaccatgcattctatcagctgctgctacagctggagggtatccttttcctttctccgtaacaatatgaatcaaa |
707 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
28468884 |
gaagcaataaaaaaatagcacattctcaccatgcattctatcagctgctgcaagagctggagggtatccctttcctttttctgtaacaatgtgaatcaaa |
28468785 |
T |
|
| Q |
708 |
actggacccgaagctggcgttgctttcactttctcaaatatgttgactaaatcttcaatgttatgaccatccagagga |
785 |
Q |
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|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28468784 |
actggacctggagctggcattgctttcactttctcaaatatgttgactaaatcttcaatgttatgaccatccatagga |
28468707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 6864748 - 6864838
Alignment:
| Q |
162 |
taaatagcacaaaacggcttgagaccttcagcggctaaccctgctgcaaatgtaacagcatgttgttcagctatgccgacatcgaaacatc |
252 |
Q |
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||||| || ||||| ||||| ||||||||| ||||| || || ||||| |||||||| |||||||| ||||| || ||||||||||||| |
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| T |
6864748 |
taaattgcgcaaaaaggcttaagaccttcacaggctagaccagcagcaaacgtaacagcgtgttgttctgctatccctacatcgaaacatc |
6864838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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