View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602-Insertion-8 (Length: 494)
Name: NF5602-Insertion-8
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Original strand, 37228678 - 37229066
Alignment:
| Q |
12 |
caaccaatagtcacaataatcctttaatgtatcaaaattcyaaaatagtactcsattggttcagctatgaggtttctccttgtgatgtagtttgtggaag |
111 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
37228678 |
caaccaatagtcactatagtcatttaatgtatcaaaattctaaaatagtacttgattggttcagctatgaggtttcttctggtgatgtagtttgtggaag |
37228777 |
T |
|
| Q |
112 |
cataaatggcacaaataacaaaagtaatattgttttcagatattgtgaaagaaatatgttgggtatcagaatcaataataaccgggtttaggtgatggga |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37228778 |
cataaatggcacaaataacaaaagtaatattgttttcagatattgtgaaagaaatatgttgggtatcagaatcaataataaccgggtttaggtgatggga |
37228877 |
T |
|
| Q |
212 |
acaaatgcaccaacggtttggttcaaggttacctctattattgaaagcaaaaattttgagacctagtctatgaagccaggttgagggaaaagatgagtat |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37228878 |
acaaatgcaccaacggtttggttcaaggttacctctattattgaaagcaaaaattttgagacctagtctatgaagccaggttgagggaaaagatgagtat |
37228977 |
T |
|
| Q |
312 |
ttcatccatggttcagctatgaggatgatctcaggtttatgttgtgttatgaatctcttcaatgctaaccttc--atggggaattagca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
37228978 |
ttcatccatggttcagctatgaggatgatctcaggtttatgttgtgttatgaatctcttcaatgctaaccttcatatggggaattagca |
37229066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 406 - 458
Target Start/End: Original strand, 37229416 - 37229468
Alignment:
| Q |
406 |
gagatcagcagggatgtcagcagcatcaccagaattgtgtggcagtccctgct |
458 |
Q |
| |
|
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|
| T |
37229416 |
gagatcagcagggatgtcagaagcatcaccagaattgtgtggcagtccctgct |
37229468 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 38445250 - 38445200
Alignment:
| Q |
10 |
tgcaaccaatagtcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||||| |||||||| |
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|
| T |
38445250 |
tgcaacaaatagtcacaatagtcctttaatgtatcgaaattctaaaatagt |
38445200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 6728070 - 6728027
Alignment:
| Q |
17 |
aatagtcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||||| |||||||| |
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|
| T |
6728070 |
aatagtcacaatagtccttcaatgaatcaaaattccaaaatagt |
6728027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 33806684 - 33806725
Alignment:
| Q |
19 |
tagtcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
33806684 |
tagtcacaataatcctttaatgtatcgaaattctaaaatagt |
33806725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 29920453 - 29920494
Alignment:
| Q |
19 |
tagtcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
29920453 |
tagtcacaataatccttcaatgtatcaaaatttcaaaatagt |
29920494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 21601929 - 21601982
Alignment:
| Q |
7 |
atatgcaaccaatagtcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
||||| ||| ||||||||||||| ||| | ||||||||||||||| |||||||| |
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|
| T |
21601929 |
atatgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagt |
21601982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 16750361 - 16750320
Alignment:
| Q |
19 |
tagtcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
16750361 |
tagtcacaataatcttttaatgtatcaaaattttaaaatagt |
16750320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 27554388 - 27554349
Alignment:
| Q |
19 |
tagtcacaataatcctttaatgtatcaaaattcyaaaata |
58 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| |||||| |
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|
| T |
27554388 |
tagtcacaatagtccttcaatgtatcaaaattctaaaata |
27554349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 26675338 - 26675300
Alignment:
| Q |
22 |
tcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||||| |
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|
| T |
26675338 |
tcacaataatcttttaatgtatcaatattctaaaatagt |
26675300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 26946946 - 26946908
Alignment:
| Q |
22 |
tcacaataatcctttaatgtatcaaaattcyaaaatagt |
60 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||||| |
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|
| T |
26946946 |
tcacaataatcttttaatgtatcaatattctaaaatagt |
26946908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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