View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602-Insertion-9 (Length: 475)
Name: NF5602-Insertion-9
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 43418409 - 43418861
Alignment:
| Q |
7 |
agaggagaataacatatcttgtatatatgggtagtgaaagtattgaaagaatttttacgaagacatcgtgaataaaatatgttgtctctattgatatatg |
106 |
Q |
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| T |
43418409 |
agaggagaataacatatcttgtatatatgggtagtgatagtattgaaagaatttttacgaagacatcatgaataaaatatgttgtctctattgatatatg |
43418508 |
T |
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| Q |
107 |
aatcttatcat-------------tgcaagtgagggaaatacaaattgagtactctttttggacgtatgattgtgtagtttacaaggtgtataagaagaa |
193 |
Q |
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| T |
43418509 |
aatcttatcatggggctggttcattgcaagtgagggaaatacaaattgagtactctttttggacgtatgattgggtagtttacaaggtgtataagaagaa |
43418608 |
T |
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| Q |
194 |
gaacaaggaggagaacacgttcttttttgttcttcaattataattaatttgcataaaccaaaactgtgtcttacatcaattgcaatacaagc--taaaat |
291 |
Q |
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| T |
43418609 |
gaacaaggaggagaacacgttcttttttgttcttcaattataattagtttgcataaaccaaaactgtgtcttacatcaattgcaatacaagctataaaat |
43418708 |
T |
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| Q |
292 |
acaaatggcttctacttttccaaattccaatcttgtgctattcccgctcccaataaaattttcaaaaatacatttgattcggattatataattaatctga |
391 |
Q |
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| T |
43418709 |
acaaatggcttctacttttccaaattccaatcttgtgctatttccgctccctataaaattttcaaaaatacatttgattcggatgatataattaatctga |
43418808 |
T |
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| Q |
392 |
atcaaattgttagcatttttcggattcaaaaattcaaaacatcatgaactgca |
444 |
Q |
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| T |
43418809 |
atcaaattgttagcatttttcggattcaaaaattcaaaacattatgaactgca |
43418861 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 6837543 - 6837511
Alignment:
| Q |
385 |
aatctgaatcaaattgttagcatttttcggatt |
417 |
Q |
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| T |
6837543 |
aatctgaatcaaattgttagcatttttcggatt |
6837511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 28442873 - 28442924
Alignment:
| Q |
369 |
ttcggattatataattaatctgaatcaaattgttagcatttttcggattcaaaaat |
424 |
Q |
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| T |
28442873 |
ttcggattatataatt----tgaagcaaattgttagcatttttcggattctaaaat |
28442924 |
T |
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