View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602_high_5 (Length: 323)
Name: NF5602_high_5
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 9420712 - 9420998
Alignment:
| Q |
18 |
atagtagtgctccaaaaagaaatagcaagacctaataaatatgcatctaaataatgaatgtatccatattcaaagggaaaa-aatgtacacattgagaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |
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| T |
9420712 |
atagtagtgctccaaaaagaaatagcaagacctaataaatatgcatctaaataatg----tatccatattcaaagggaaaaaaatgtacagattgagaag |
9420807 |
T |
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| Q |
117 |
gaagactcacaactactatcggcagtcccaattatgcatttaagttggcatttaatttgttaaaatattatgcgagtgattgaattattgtttttgttga |
216 |
Q |
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| T |
9420808 |
gaagactcacaactactatcggcagtcccaattatgcatttaagttggcatttgatttgttaaaatattatgcaagtgattgaattattggtttcgttga |
9420907 |
T |
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| Q |
217 |
aagttgcggtcatactactaatattaatatagagtttcgaattattttgtatgggttacaaatcatttgagatcatggttttagggatatt |
307 |
Q |
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| T |
9420908 |
aagttgtggtcatactactaatattaatatgaagcttcgaattattttgtatggattacaaatcatttgagatcatggttttagggatatt |
9420998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 31795304 - 31795201
Alignment:
| Q |
203 |
attgtttttgttgaaagttgcggtcatactactaatattaatatagagtttcgaattattttgtatgggttacaaatcatttgagatcatggttttaggg |
302 |
Q |
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|||| ||||| || |||||| || ||||||||| ||||| || | ||| |||| ||||| |||||||||||||||| ||| |||| ||||||||||| |
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| T |
31795304 |
attggttttgctggaagttgtggccatactacttatattgatgtggagcttcgtgctatttcttatgggttacaaatcacttgggatcttggttttaggg |
31795205 |
T |
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| Q |
303 |
atat |
306 |
Q |
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|||| |
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| T |
31795204 |
atat |
31795201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 24048302 - 24048343
Alignment:
| Q |
203 |
attgtttttgttgaaagttgcggtcatactactaatattaat |
244 |
Q |
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|||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
24048302 |
attggttttgttggaagttgtggtcatactactaatattaat |
24048343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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