View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5602_low_1 (Length: 416)

Name: NF5602_low_1
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5602_low_1
NF5602_low_1
[»] chr8 (5 HSPs)
chr8 (24-395)||(5322700-5323070)
chr8 (159-403)||(17798445-17798688)
chr8 (182-266)||(15176885-15176969)
chr8 (59-114)||(3942010-3942065)
chr8 (187-253)||(27286899-27286966)
[»] chr6 (3 HSPs)
chr6 (140-353)||(22795480-22795694)
chr6 (232-403)||(7318264-7318435)
chr6 (160-253)||(9513159-9513252)
[»] chr3 (3 HSPs)
chr3 (160-360)||(22974733-22974933)
chr3 (255-400)||(22243522-22243667)
chr3 (214-255)||(39950949-39950990)
[»] chr2 (2 HSPs)
chr2 (161-403)||(19323108-19323349)
chr2 (187-253)||(19378016-19378083)
[»] chr1 (2 HSPs)
chr1 (160-253)||(19050089-19050182)
chr1 (209-324)||(17895357-17895473)
[»] chr4 (6 HSPs)
chr4 (182-402)||(42586444-42586664)
chr4 (287-406)||(36392298-36392417)
chr4 (160-389)||(9394186-9394415)
chr4 (161-253)||(25105407-25105499)
chr4 (192-253)||(7620734-7620795)
chr4 (164-220)||(17451145-17451202)
[»] chr7 (4 HSPs)
chr7 (159-245)||(14107395-14107481)
chr7 (159-245)||(14417352-14417438)
chr7 (209-322)||(33440271-33440385)
chr7 (192-240)||(8922819-8922867)
[»] chr5 (1 HSPs)
chr5 (183-253)||(17197721-17197791)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 24 - 395
Target Start/End: Original strand, 5322700 - 5323070
Alignment:
Q  24 attaatcaagaatggctataaatatgtcccagtctttcgtgattgaactcaaacatattggttaatgctttaaacgtcgagtttcaatgtgggttgtggt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  5322700 attaatcaagaatggctataaatatgtcccagtctttcgtgattgaactcaaacatattggttaatgctttaaacgtcgagtttcaatgtgtgttgcggt 5322799  T
Q  124 tagtgtaccgacgccatgttctattggatttgtttcgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatctta 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||    
T  5322800 ttgtgtaccgacgccatgttctattggatttgtttcgatggtttgactcgaaaggaaaattatagcttgttgttgttttgcaaaaagtttatggatctta 5322899  T
Q  224 aatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgt 323  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5322900 aatcgcttttgtgttgacagacgattcatacgcc-atttagtttctccattcattatgtttgatttggagtgtgggactcgaaatggtcgtttagcttgt 5322998  T
Q  324 ttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcact 395  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||    
T  5322999 ttccctttgttgcagggagatgatggtacatagactcgctttcgtgtcgacgaacggtacaatcactgcact 5323070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 403
Target Start/End: Original strand, 17798445 - 17798688
Alignment:
Q  159 cgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccg 258  Q
    |||||||||| |||||||| |  ||||||| ||| | ||||||||||   ||||||||||||||| |||||||||| ||| | ||||||||||||||||     
T  17798445 cgatggtttgactcgaaagagcgattatagtttgcttttgttttgcatggagttgatggatcttagatcgcttttgcgttaggagacgattcatatgcca 17798544  T
Q  259 atttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggac 358  Q
     ||||| ||| ||||||| |||| |||| ||||  ||||||  || ||| ||||||||| |||  ||  ||||||||||||||| ||||| ||||| ||     
T  17798545 gtttagattcgccattcactatggttgacttggtttgtggggctcaaaagggtcgtttaactt-attatctttgttgcagggagttgatggtacatagat 17798643  T
Q  359 tcactttcgtgtcgacggacggtccaatcactgcactgaagacct 403  Q
     | ||| ||||| |||| ||| |||||||||  || |||||||||    
T  17798644 ccgcttccgtgttgacgaacgatccaatcaccacattgaagacct 17798688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 15176969 - 15176885
Alignment:
Q  182 attatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtt 266  Q
    |||||| |||| |||| ||||||||  |||||||||||||| |||||||| |||| ||||||| |||| ||| ||| || |||||    
T  15176969 attataacttgctgttattttgcagggagttgatggatcttgaatcgcttatgtgatggcagatgatttataggccaatatagtt 15176885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 3942065 - 3942010
Alignment:
Q  59 ttcgtgattgaactcaaacatattggttaatgctttaaacgtcgagtttcaatgtg 114  Q
    |||||||||| | ||| ||| ||||||| |||||||||||||| ||||||||||||    
T  3942065 ttcgtgattgcaatcagacagattggtttatgctttaaacgtccagtttcaatgtg 3942010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 27286899 - 27286966
Alignment:
Q  187 agcttgttgttgtttt-gcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 253  Q
    ||||||||| |||||| ||||  |||||||||||||| ||| | || |||||||||||||||||||||    
T  27286899 agcttgttgctgtttttgcagggagttgatggatcttgaattgtttctgtgttggcagacgattcata 27286966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 140 - 353
Target Start/End: Complemental strand, 22795694 - 22795480
Alignment:
Q  140 tgttctattggatttgtttcga-tggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgtt 238  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||| | ||||    
T  22795694 tgttctattggatttgtttcaaatggtttgactcgaaagggaaattatagcttgttgtggttttgcaggaagttgatggattttgaatcgcttctatgtt 22795595  T
Q  239 ggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcag 338  Q
    || ||| ||||||||  |   ||| ||||||||||||| ||||||||||||  | |||| || |||||| |||| ||||||||| |||||||||||| ||    
T  22795594 ggaagatgattcatacacatgttttgtttctccattcaatatgtttgatttaaactgtgagactcgaaagggtcatttagcttgcttccctttgttgtag 22795495  T
Q  339 ggagatgatgataca 353  Q
    |||| ||||| ||||    
T  22795494 ggagttgatggtaca 22795480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 403
Target Start/End: Original strand, 7318264 - 7318435
Alignment:
Q  232 ttgtgttggcagacgattcatatgccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttcccttt 331  Q
    ||||| ||| ||||||||||||  ||| |||||||| ||||||| |||||||| |||| || ||||| |||||||| |||| ||||||||| | || |||    
T  7318264 ttgtgctggtagacgattcatacaccggtttagtttatccattctttatgtttaatttagattgtggcattcgaaagggtcatttagcttgctgccattt 7318363  T
Q  332 gttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaatcactgcactgaagacct 403  Q
    |  |||||||| ||||| |||||||||||  |||| ||| ||||||||  || ||||| ||| |||||||||    
T  7318364 ggagcagggagttgatggtacatggactcgttttcatgttgacggacgaccctatcacggcattgaagacct 7318435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 9513159 - 9513252
Alignment:
Q  160 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 253  Q
    ||||||||| ||||||||||  ||||| ||||| |||||||||||||  |||||||||||| |  |||| |  |||||||||||||||||||||    
T  9513159 gatggtttggctcgaaagggcgattattgcttgctgttgttttgcagggagttgatggatcgtggatcgttcatgtgttggcagacgattcata 9513252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 160 - 360
Target Start/End: Original strand, 22974733 - 22974933
Alignment:
Q  160 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccga 259  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||||||| || ||||| ||| || |||||||||| || ||| |||||||||||| || |     
T  22974733 gatggtttggctcgaaaggaaaattatagcttgttgtggttttgcaggaatttgattgatattgaatcgcttttatgctggaagacgattcatacgctgg 22974832  T
Q  260 tttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggact 359  Q
    |||||||| |||||||| |||||||||||| || |||| || |||||| ||| |||||||||| | || |||| ||||||||| | ||| ||||||||||    
T  22974833 tttagtttgtccattcactatgtttgatttagactgtgagactcgaaagggttgtttagcttgctgccttttgctgcagggagtttatggtacatggact 22974932  T
Q  360 c 360  Q
    |    
T  22974933 c 22974933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 400
Target Start/End: Complemental strand, 22243667 - 22243522
Alignment:
Q  255 gccgatttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacat 354  Q
    |||| ||||||||||||||||| ||||| ||||||||| ||||  |||||||| | |||||||| ||| | ||||||| | || |||| ||||| |||||    
T  22243667 gccggtttagtttctccattcactatgtatgatttggactgtgaaattcgaaaggatcgtttagtttgatgccctttgctacatggagttgatggtacat 22243568  T
Q  355 ggactcactttcgtgtcgacggacggtccaatcactgcactgaaga 400  Q
    |||||| | |  |||| |||||||||||||||||| ||| ||||||    
T  22243567 ggactcccgtcggtgttgacggacggtccaatcaccgcattgaaga 22243522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 39950990 - 39950949
Alignment:
Q  214 atggatcttaaatcgcttttgtgttggcagacgattcatatg 255  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  39950990 atggatcttgaatcgcttttgtgttgacagacgattcatatg 39950949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 403
Target Start/End: Complemental strand, 19323349 - 19323108
Alignment:
Q  161 atggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgc-cga 259  Q
    |||||||| || |||||||| ||| |||||||||| | | ||||||| | ||||||||||||  |||| || |||||||||||| |||||||| ||  |     
T  19323349 atggtttggcttgaaagggagattttagcttgttgctttgttgcagagatttgatggatcttggatcgtttatgtgttggcagatgattcatacgctagt 19323250  T
Q  260 tttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggact 359  Q
    || || ||| ||||||||| | ||||||||| | | ||||  | |||| | |||||||||||||| || || |||||| |||| ||||| |||||| ||     
T  19323249 ttaagattcaccattcattttatttgatttgtattatggggcttgaaaggatcgtttagcttgttgccattagttgcatggagttgatg-tacatgaac- 19323152  T
Q  360 cactttcgtgtcgacggacggtccaatcactgcactgaagacct 403  Q
    ||||| ||||| ||||||||||||| |||||||| |||||||||    
T  19323151 cacttccgtgttgacggacggtccagtcactgcattgaagacct 19323108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 19378016 - 19378083
Alignment:
Q  187 agcttgttgttgtttt-gcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 253  Q
    ||||||||| |||||| ||||  |||||||||||||| ||| | |||||||||| |||||||||||||    
T  19378016 agcttgttgctgtttttgcagggagttgatggatcttgaattgtttttgtgttgacagacgattcata 19378083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 19050089 - 19050182
Alignment:
Q  160 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 253  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||  |||||  ||||||| |||||||| |||| ||||||| ||||||||    
T  19050089 gatggtttggctcgaaagggaaattatagcttgttgttgtttggcagggagttgcaggatcttgaatcgcttctgtgctggcagatgattcata 19050182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 17895357 - 17895473
Alignment:
Q  209 agttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccgattta-gtttctccattcattatgtttgatttggagtgtgggattcgaaa 307  Q
    |||||||||||||| ||| | |||||| |||| |||||||||||| ||| | ||| | ||| ||||||| | ||||||||||||| |||| |  ||||||    
T  17895357 agttgatggatcttgaattgtttttgtcttggtagacgattcatacgccaacttaagattcgccattcactttgtttgatttggattgtgaggctcgaaa 17895456  T
Q  308 tggtcgtttagcttgtt 324  Q
    | |||||||||||||||    
T  17895457 tagtcgtttagcttgtt 17895473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 402
Target Start/End: Original strand, 42586444 - 42586664
Alignment:
Q  182 attatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccgatttagtttctccattcattatg 281  Q
    |||||||||| || |||||||||||  |||||||||||||| ||| |||| ||||||||||||||||||||| |   |||||| ||   |||||| ||||    
T  42586444 attatagcttattattgttttgcagggagttgatggatcttgaatggcttatgtgttggcagacgattcatacggtaatttagatttgtcattcactatg 42586543  T
Q  282 tttgatttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggt 381  Q
    ||||| ||  | || |||  |||||| | || |||||||||||  | |||||||||||||| | ||| |||| ||||   |||  |||| || |||||||    
T  42586544 tttgacttaaactgcggggctcgaaaggatcatttagcttgttgtcatttgttgcagggagttaatggtacaaggacctgcttctgtgttgaaggacggt 42586643  T
Q  382 ccaatcactgcactgaagacc 402  Q
    | |||||| ||||||||||||    
T  42586644 ctaatcaccgcactgaagacc 42586664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 406
Target Start/End: Complemental strand, 36392417 - 36392298
Alignment:
Q  287 tttggagtgtgggattcgaaatggtcgtttagcttgtttccctttgttgcagggagatgatgatacatggactcactttcgtgtcgacggacggtccaat 386  Q
    |||||| |||| || |||||| |||||||||||||| | || |||| ||||||||| |||||  ||| |||||||||||||||  ||||||||| || ||    
T  36392417 tttggattgtgtgactcgaaagggtcgtttagcttgctgccatttgctgcagggagttgatggaacaaggactcactttcgtgctgacggacggccctat 36392318  T
Q  387 cactgcactgaagacctatg 406  Q
    |||  |||||||||||||||    
T  36392317 caccacactgaagacctatg 36392298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 389
Target Start/End: Complemental strand, 9394415 - 9394186
Alignment:
Q  160 gatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcatatgccga 259  Q
    ||||||| | |||||||||| |||||||||||||||||||||| |||  |||||| |||||||  || | || |||||||||||||||| |||| |||      
T  9394415 gatggttcggctcgaaagggcaattatagcttgttgttgttttacagggagttgaaggatcttggattgattctgtgttggcagacgatccatacgccag 9394316  T
Q  260 tttagtttctccattcattatgtttgatttggagtgtgggattcgaaatggtcgtttagcttgtttc-cctttgttgcagggagatgatgatacatggac 358  Q
    |||||  || ||| ||  |||| |||  |||||  |||||  || | | |||| ||| ||||| | |   |||||||||||||| ||||| ||||||||     
T  9394315 tttagactcgccactctctatg-ttggcttggacggtggggctcaagagggtcattttgcttgctgctattttgttgcagggagttgatggtacatggat 9394217  T
Q  359 tcactttcgtgtcgacggacggtccaatcac 389  Q
     ||||| ||||| ||||||||||||||||||    
T  9394216 ccacttccgtgttgacggacggtccaatcac 9394186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 25105407 - 25105499
Alignment:
Q  161 atggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 253  Q
    |||||||| ||||||||||| |||||| ||| |||||||||| || | ||||||| ||||||  || | |||||||| |||||||||||||||    
T  25105407 atggtttggctcgaaagggagattataacttcttgttgttttacaaagagttgatagatcttggattgtttttgtgtcggcagacgattcata 25105499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 7620795 - 7620734
Alignment:
Q  192 gttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 253  Q
    |||||||||||||||  | |||||||||||| ||| | ||||||||||| ||||||||||||    
T  7620795 gttgttgttttgcagggaattgatggatcttgaattgtttttgtgttggtagacgattcata 7620734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 17451145 - 17451202
Alignment:
Q  164 gtttgcctcgaaaggga-aattatagcttgttgttgttttgcagaaagttgatggatc 220  Q
    ||||| ||||||||||  |||||||||||| ||||||||||||||  |||||||||||    
T  17451145 gtttggctcgaaaggggcaattatagcttgctgttgttttgcagagggttgatggatc 17451202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 14107395 - 14107481
Alignment:
Q  159 cgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagac 245  Q
    |||||||||| ||||||||||  ||||||||||| ||||| |||||||  |||||| |||||||  ||||||| |||||||||||||    
T  14107395 cgatggtttggctcgaaagggtgattatagcttgctgttgatttgcagggagttgagggatcttggatcgcttatgtgttggcagac 14107481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 14417352 - 14417438
Alignment:
Q  159 cgatggtttgcctcgaaagggaaattatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagac 245  Q
    |||||||||| ||||||||||  ||||||||||| ||||| |||||||  |||||| |||||||  ||||||| |||||||||||||    
T  14417352 cgatggtttggctcgaaagggtgattatagcttgctgttgatttgcagggagttgagggatcttggatcgcttatgtgttggcagac 14417438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 322
Target Start/End: Original strand, 33440271 - 33440385
Alignment:
Q  209 agttgatggatcttaaatcgcttttgtgttggcagacgattcatatgcc-gatttagtttctccattcattatgtttgatttggagtgtgggattcgaaa 307  Q
    |||||||||||||| | | | || ||||||||| ||||||||||| ||| | || || ||||||||||| | ||| ||||||||| |||| |  ||||||    
T  33440271 agttgatggatcttgacttgtttctgtgttggcggacgattcatacgccagcttaagattctccattcactttgtgtgatttggattgtgcggctcgaaa 33440370  T
Q  308 tggtcgtttagcttg 322  Q
     ||||||||| ||||    
T  33440371 gggtcgtttaacttg 33440385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 8922819 - 8922867
Alignment:
Q  192 gttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttgg 240  Q
    |||||||||||||||  |||||||||||||| ||| | |||||||||||    
T  8922819 gttgttgttttgcagggagttgatggatcttgaattgtttttgtgttgg 8922867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 17197791 - 17197721
Alignment:
Q  183 ttatagcttgttgttgttttgcagaaagttgatggatcttaaatcgcttttgtgttggcagacgattcata 253  Q
    ||||||||||||||||||||||||  ||||||||||||||  || | || | |||||||||||||||||||    
T  17197791 ttatagcttgttgttgttttgcagggagttgatggatcttggattgtttctatgttggcagacgattcata 17197721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University