View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602_low_10 (Length: 211)
Name: NF5602_low_10
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 51877713 - 51877880
Alignment:
| Q |
16 |
aatatattgaataacattatcttttacaagacctaattttgtacgatatacaattttatatatgaaaatgctaatgagttttctaattgcactccataag |
115 |
Q |
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| T |
51877713 |
aatatattgaataacattatcttttacaagatctaattttgtacgatatacaattttatatatggaaatgctaacgagttttctaattgtaatccttaag |
51877812 |
T |
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| Q |
116 |
gactttatatagtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatg |
183 |
Q |
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| T |
51877813 |
aactttatatagtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatg |
51877880 |
T |
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