View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602_low_2 (Length: 404)
Name: NF5602_low_2
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 43418033 - 43418414
Alignment:
| Q |
11 |
caaaggggaagtttatacaaatttgattacacaaccaaacataaatcaaaggttaggtcatgacttaacacgacctaacataaatcag--------ggac |
102 |
Q |
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| T |
43418033 |
caaaggggaagtttatacaaatttgattacacgaccaaacataaatcaaaggttaggtcatgacttaacacgacctaacataaatcagagcaacagggac |
43418132 |
T |
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| Q |
103 |
acttgttacaccagacgttaagaacacgcacaaacgtttatagattaggtctaagaggcttgagttatacatctcggtttataactcaggtcagaaacaa |
202 |
Q |
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| T |
43418133 |
acttgttacaccagacgttaagaacacgcacaaacgtttatagcttaggtctaagaggcttgagttatacatctcggtttataactcaggtcagaaacaa |
43418232 |
T |
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| Q |
203 |
agtttcatgtctgagcagaatttgttttttcnnnnnnnttacttaacttttagacccgttagatatgatttaactaaggggcttgtgtaacggttacaca |
302 |
Q |
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| T |
43418233 |
agtttcatgtctgagcagaatttgttttttcaaaaaaattacttaactgttagacctgttagatatgatttaactaaggggcttgtgtaacggttacaca |
43418332 |
T |
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| Q |
303 |
aaattagaaacacaaaaaacttcatcaatttgaaagctcttaaagtgtctaattgatcaggagaattagctgaagaagagga |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43418333 |
aaattagaaacacaaaaaacttcatcaatttgaaagctcttaaagtgtctaattgatcaggagaattagctgaagaagagga |
43418414 |
T |
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