View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602_low_3 (Length: 390)
Name: NF5602_low_3
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 50049686 - 50049491
Alignment:
| Q |
31 |
cacagagttgacttcttataatagaaaaacttaaatgttcgttgaaattcatataagaagttgaattattgattaataaaatactaattagagaaagaat |
130 |
Q |
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| T |
50049686 |
cacagagttgacttcttataatagaaaaacttaaatgttcgttgaaattcatataagaagttgaattattgattaataaaatactaattagagaaagaat |
50049587 |
T |
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| Q |
131 |
tattgataattaaataaattagacaaagccttgccgtatgtggtggtatgcatatatgtattccacttgtataacaacgtagataacaagaagtgttaa |
229 |
Q |
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| T |
50049586 |
tattgataattaaataaattagacaaagccttgccgtatg---tggtatgcatatatgtattccacttgtataacaacgtagataacaagaagtgttaa |
50049491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 50049469 - 50049351
Alignment:
| Q |
253 |
aagaaatgacgttgccatctctagttagaagacgttcaagtggcgaaataaggaacttggcctcaatttctagcagtcttttaccagcatttggcactaa |
352 |
Q |
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| T |
50049469 |
aagaaatgacgttgccatctctagttagaagacgttcaagtggcgaaataaggaacttggcctcaatttctagcagtcttttaccagcatttggcactaa |
50049370 |
T |
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| Q |
353 |
tcctgatgaaggttacttc |
371 |
Q |
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| T |
50049369 |
tcctgatgaaggttacttc |
50049351 |
T |
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