View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5602_low_4 (Length: 369)
Name: NF5602_low_4
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5602_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 28478151 - 28477812
Alignment:
| Q |
11 |
cacagacatggataacagatatgatactgaaacacagacacgtagacacccgtaataatttnnnnnnntagaagtgattgaatgtaactgtatgtgtcaa |
110 |
Q |
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| T |
28478151 |
cacagacatggataacagatatgatactgaaacacagacacgtagacacccgtaataatttaaaaaaatagaagtgattgaatgtaactgtatgtgtcaa |
28478052 |
T |
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| Q |
111 |
tgtccaagactgataggtgttggacactggacacaccttcaatcgagatatcggtgctacatagtatgctaattacctcaagcggggttcctttgttatt |
210 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28478051 |
tgtcgaagactgataggtgttggacaccggacacaccttcaatcgagatatgggtgctacatagtatgctaattacctcaagcggggttcctttgttatg |
28477952 |
T |
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| Q |
211 |
gaggggaagatcagctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttca |
310 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28477951 |
gagaggaagatcagctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagttca |
28477852 |
T |
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| Q |
311 |
gcttcatcagatggagccattacaatcatgttgggcaagc |
350 |
Q |
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| T |
28477851 |
gcttcatcagatggagccatgacaatcatgttgggcaagc |
28477812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 28469811 - 28469473
Alignment:
| Q |
11 |
cacagacatggataacagatatgatactgaaacacagacacgtagacacccgtaataatttnnnnnnntagaa--gtgattgaatgtaactgtatgtgtc |
108 |
Q |
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|||||||| ||||||||||||||||||||| ||| |||||||||||||| | | ||||||| | || ||||||||||||||||||||||| | |
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| T |
28469811 |
cacagacacggataacagatatgatactgacacatagacacgtagacacacatgataatttaacaaaacaaaaaggtgattgaatgtaactgtatgtgcc |
28469712 |
T |
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| Q |
109 |
aatgtccaagactgataggtgttggacactggacacaccttcaatc-gagatatcggtgctacatagtatgctaattacctcaagcggggttcctttgtt |
207 |
Q |
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|||| || ||||| | ||||||||||| ||| ||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
28469711 |
ggtgtctaacactgacaagtgttggacaccgga-acaccttcaatttgagctatcaatgctacatagtatgctaa---cctcaagcggggttcctttgtt |
28469616 |
T |
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| Q |
208 |
attgaggggaagatcagctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagt |
307 |
Q |
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||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469615 |
attaagaggaagattggctccaattccatttcctcttggaaatctaaagcaacttggtctatcatctatagctgctgcagttgcaaccatgttcatcagt |
28469516 |
T |
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| Q |
308 |
tcagcttcatcagatggagccattacaatcatgttgggcaagc |
350 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28469515 |
tcagcttcatcagatggagccatgacaatcatgttgggcaagc |
28469473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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