View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5602_low_9 (Length: 212)

Name: NF5602_low_9
Description: NF5602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5602_low_9
NF5602_low_9
[»] chr2 (3 HSPs)
chr2 (1-205)||(13448576-13448780)
chr2 (1-207)||(13440413-13440619)
chr2 (1-205)||(13455047-13455251)
[»] chr7 (1 HSPs)
chr7 (1-199)||(3417295-3417493)
[»] chr5 (2 HSPs)
chr5 (1-174)||(28385547-28385720)
chr5 (1-207)||(12540898-12541104)
[»] scaffold0536 (2 HSPs)
scaffold0536 (1-138)||(6337-6474)
scaffold0536 (7-134)||(10323-10450)
[»] chr4 (4 HSPs)
chr4 (4-138)||(48958363-48958497)
chr4 (1-62)||(48974322-48974383)
chr4 (15-100)||(48912209-48912294)
chr4 (8-61)||(48961516-48961569)
[»] chr6 (2 HSPs)
chr6 (1-207)||(12589926-12590132)
chr6 (1-134)||(12483294-12483427)
[»] chr8 (1 HSPs)
chr8 (1-160)||(12641285-12641444)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13448576 - 13448780
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448576 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 13448675  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13448676 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccct 13448775  T
Q  201 ctctg 205  Q
    |||||    
T  13448776 ctctg 13448780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 13440413 - 13440619
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| || || |||||||| ||||||||||||||||| ||||    
T  13440413 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaat 13440512  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccct 200  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||  |||||||  ||| || ||||||| ||||||||    
T  13440513 agttgatgcttccaaaacatatgtacaacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccct 13440612  T
Q  201 ctctgct 207  Q
    |||||||    
T  13440613 ctctgct 13440619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13455047 - 13455251
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||||  |  ||||||||||| ||||||||||||| |||  |||    
T  13455047 tcatcttctttccctttcttctccggaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaat 13455146  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccct 200  Q
    | |||||||||||||||||||||||||| |||||||||||||||| ||| || ||||| ||||||| |||||| |||||| ||  | |||| ||||||||    
T  13455147 aattgatgcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccct 13455246  T
Q  201 ctctg 205  Q
    |||||    
T  13455247 ctctg 13455251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 3417493 - 3417295
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||  |||| ||||| ||||||||||||||||| ||||    
T  3417493 tcatcttcttttcctttcttctcaagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaat 3417394  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccc 199  Q
    |||| | ||||||||||||||||||||||||||||||||||   | ||| | |||||||| ||||| ||| ||| || || |||||||||| |||||||    
T  3417393 agtttaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccc 3417295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 28385547 - 28385720
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||| ||||| ||||||||||||||||| ||||    
T  28385547 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaat 28385646  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgc 174  Q
     ||| ||||||||||||||||||||||  ||||||||||||| || ||| | ||||||  |||||| |||||||    
T  28385647 ggtttatgcttccaaaacatatgtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgc 28385720  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12540898 - 12541104
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||   | ||||||  |||||||| ||||| ||||||||||| ||| | ||||    
T  12540898 tcatcttctttccctctcttctcaggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaat 12540997  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccct 200  Q
      || |||||||||||||||||||||| |||||||||||||  || ||| | |||||| || |||  ||||||| |  ||||||||||||||||||||||    
T  12540998 gatttatgcttccaaaacatatgtacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccct 12541097  T
Q  201 ctctgct 207  Q
    | |||||    
T  12541098 ccctgct 12541104  T

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Target: scaffold0536 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 6474 - 6337
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||| |||||||| ||||||||||| |  |||     
T  6474 tcatcttctttccctttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaa 6375  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagtta 138  Q
     |   | ||||||||| |||||||||||||||||||||    
T  6374 ggcataagcttccaaagcatatgtacaacactgagtta 6337  T

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Target: scaffold0536; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 10450 - 10323
Alignment:
Q  7 tctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttga 106  Q
    |||||||||||||||||||||||||| ||||  |||  || ||| |||||||||| |   || || ||||| || ||||||||||| ||||||||    |    
T  10450 tctttccctttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacata 10351  T
Q  107 tgcttccaaaacatatgtacaacactga 134  Q
     ||||||||| || ||||||||||||||    
T  10350 ggcttccaaagcaaatgtacaacactga 10323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 48958363 - 48958497
Alignment:
Q  4 tcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagt 103  Q
    ||||||||||||||||||||||||||||||||||  |||  |||||| |||||||||||| |||| || ||||| || |||||||||||||| |||||      
T  48958363 tcttctttccctttcttctcaggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataac 48958462  T
Q  104 tgatgcttccaaaacatatgtacaacactgagtta 138  Q
      ||||||||||| |||||||||||||||||||||    
T  48958463 atatgcttccaaagcatatgtacaacactgagtta 48958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48974322 - 48974383
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctat 62  Q
    ||||| ||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||    
T  48974322 tcatcctctttccctttcttctcggggacaacccatatgaattggtgacccgatgcttctat 48974383  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 48912294 - 48912209
Alignment:
Q  15 tttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    |||||| |||||||||||||||||||||  |||||  |||||||| ||| | || || ||||| || ||||||||||| |||||||    
T  48912294 tttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaat 48912209  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 48961516 - 48961569
Alignment:
Q  8 ctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttcta 61  Q
    |||||||||| |||||||||||||||||||  |||  |||||| ||||||||||    
T  48961516 ctttcccttttttctcaggaacaacccatacaaattcgtgacccgatgcttcta 48961569  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12590132 - 12589926
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    |||||||| |||||||| ||||| |||| |||||||| ||||  ||| || |||||||||||  |||| |  ||||| || ||||||||||| || ||||    
T  12590132 tcatcttccttcccttttttctcgggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaat 12590033  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcgcagcaccctcatttcccct 200  Q
    ||   ||||| ||||| |||||||||||||| |||||| ||| ||  || |  ||||||||||| | ||| ||||| ||| || ||| ||||||||||||    
T  12590032 agcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccct 12589933  T
Q  201 ctctgct 207  Q
     ||||||    
T  12589932 atctgct 12589926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 12483427 - 12483294
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    |||||||| |||||||| ||||||||||||||||||||||||   | ||| |||||||||||  | ||||  || ||||| || ||||||||||| ||||    
T  12483427 tcatcttccttcccttttttctcaggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaat 12483328  T
Q  101 agttgatgcttccaaaacatatgtacaacactga 134  Q
     |   | ||| ||||| |||||||||||||||||    
T  12483327 tgcataggctcccaaagcatatgtacaacactga 12483294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 12641444 - 12641285
Alignment:
Q  1 tcatcttctttccctttcttctcaggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaat 100  Q
    ||||||| |||||||||||||||||||||||||||||  |||  |||||| ||   ||||||  | |  || |||||||| |||||||||||||| ||||    
T  12641444 tcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacctgaattttctattccgctcgcaatctcgtaaagttgtttatcagagaaat 12641345  T
Q  101 agttgatgcttccaaaacatatgtacaacactgagttaactctctctgaatcgagccaac 160  Q
    |   |||||| |||||||||||||| |||||||| ||| ||  || ||||| ||||||||    
T  12641344 aagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagccaac 12641285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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