View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5603-Insertion-1 (Length: 580)

Name: NF5603-Insertion-1
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5603-Insertion-1
NF5603-Insertion-1
[»] chr4 (10 HSPs)
chr4 (126-453)||(21261019-21261341)
chr4 (193-304)||(50859412-50859523)
chr4 (126-271)||(35292685-35292835)
chr4 (466-580)||(21262667-21262775)
chr4 (174-304)||(35033173-35033303)
chr4 (176-304)||(13779943-13780071)
chr4 (194-304)||(31229011-31229121)
chr4 (185-304)||(48085221-48085339)
chr4 (174-304)||(41222943-41223073)
chr4 (212-304)||(25054775-25054867)
[»] chr3 (15 HSPs)
chr3 (126-335)||(42028570-42028774)
chr3 (126-304)||(39439206-39439389)
chr3 (117-324)||(25046051-25046263)
chr3 (172-324)||(32279037-32279189)
chr3 (223-306)||(24373430-24373513)
chr3 (21-65)||(42231693-42231737)
chr3 (176-266)||(44714059-44714149)
chr3 (195-260)||(23420500-23420565)
chr3 (246-300)||(2144593-2144647)
chr3 (195-249)||(2275577-2275631)
chr3 (179-225)||(14568546-14568592)
chr3 (466-515)||(20984318-20984368)
chr3 (255-304)||(35231288-35231337)
chr3 (126-198)||(24372963-24373035)
chr3 (213-249)||(42958275-42958311)
[»] chr2 (9 HSPs)
chr2 (174-335)||(28219664-28219825)
chr2 (125-268)||(10354894-10355042)
chr2 (174-324)||(28198514-28198664)
chr2 (196-300)||(23701651-23701755)
chr2 (188-320)||(17998987-17999119)
chr2 (207-274)||(44247062-44247129)
chr2 (246-300)||(12432857-12432911)
chr2 (466-515)||(20716587-20716637)
chr2 (207-304)||(22017713-22017810)
[»] chr5 (12 HSPs)
chr5 (126-335)||(4944410-4944613)
chr5 (118-271)||(11617875-11618033)
chr5 (183-324)||(30085579-30085720)
chr5 (179-297)||(21521454-21521572)
chr5 (179-297)||(21532020-21532138)
chr5 (172-304)||(7505285-7505417)
chr5 (211-306)||(21018128-21018223)
chr5 (174-271)||(15024025-15024122)
chr5 (466-515)||(13190717-13190767)
chr5 (246-304)||(16596790-16596848)
chr5 (184-225)||(32233763-32233804)
chr5 (179-271)||(41484289-41484381)
[»] chr1 (19 HSPs)
chr1 (179-323)||(8099668-8099811)
chr1 (179-304)||(48046999-48047124)
chr1 (189-269)||(8102100-8102180)
chr1 (199-271)||(34970846-34970918)
chr1 (193-301)||(49765566-49765674)
chr1 (174-279)||(15582289-15582394)
chr1 (178-260)||(8103588-8103670)
chr1 (357-441)||(8102355-8102440)
chr1 (373-441)||(8103869-8103938)
chr1 (198-320)||(41419075-41419198)
chr1 (182-269)||(41404868-41404955)
chr1 (174-304)||(32573705-32573835)
chr1 (121-281)||(50677402-50677557)
chr1 (207-306)||(7521720-7521819)
chr1 (357-396)||(8099500-8099539)
chr1 (255-304)||(35306272-35306321)
chr1 (184-225)||(42116481-42116522)
chr1 (184-225)||(49742069-49742110)
chr1 (206-250)||(50138450-50138494)
[»] scaffold0022 (2 HSPs)
scaffold0022 (207-306)||(43496-43595)
scaffold0022 (207-306)||(77216-77315)
[»] scaffold0039 (1 HSPs)
scaffold0039 (172-306)||(57634-57768)
[»] chr8 (7 HSPs)
chr8 (172-304)||(34924018-34924150)
chr8 (199-301)||(38680487-38680589)
chr8 (172-279)||(29844963-29845070)
chr8 (466-515)||(22530288-22530338)
chr8 (466-515)||(22534973-22535023)
chr8 (466-515)||(25992897-25992947)
chr8 (184-225)||(11355524-11355565)
[»] chr7 (7 HSPs)
chr7 (175-324)||(19626094-19626243)
chr7 (174-267)||(36656799-36656892)
chr7 (174-306)||(19848438-19848565)
chr7 (126-304)||(12634070-12634247)
chr7 (174-269)||(3215179-3215274)
chr7 (246-300)||(28300772-28300826)
chr7 (258-306)||(5350354-5350402)
[»] scaffold0110 (1 HSPs)
scaffold0110 (179-306)||(37864-37990)
[»] scaffold0097 (1 HSPs)
scaffold0097 (466-515)||(20425-20475)
[»] chr6 (1 HSPs)
chr6 (466-515)||(33092228-33092278)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 126 - 453
Target Start/End: Original strand, 21261019 - 21261341
Alignment:
Q  126 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    ||||||||||| |||||||||| | |||||| | ||||| |||     || ||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  21261019 tgtttggataacctaaaactaacgaagcggagcggaatggagc-----gggatggaatggaatggagtggaacaaagattccattccattgttttgatat 21261113  T
Q  226 tatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttcttatttatcctttacttag 325  Q
    |||| |||||||||| |||||||| | |||||||||||||||||||  | |||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  21261114 tatatgacggaatgagactaattttctactccattgtttggaaagtgaacggaatggaattagttataacttttttattccttatttaccctttacttag 21261213  T
Q  326 aaaacttcacaagaataaacataagcagcttaaattttggttctgcataatttgcaactagtgtattttcctttggcaaattaaaccaaacaataataat 425  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21261214 aaaacttcacaagaataaacataagcaacataaattttggttctgcataatttgcaactagtgtattttcctttggcagattaaaccaaacaataataat 21261313  T
Q  426 atagaagaattatataggttacacgtaa 453  Q
    || |||||||||||||||||||||||||    
T  21261314 atcgaagaattatataggttacacgtaa 21261341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 193 - 304
Target Start/End: Complemental strand, 50859523 - 50859412
Alignment:
Q  193 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttat 292  Q
    ||||| ||| ||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||| |||||||||| || |||||| ||| ||||||    
T  50859523 tggaataaagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttat 50859424  T
Q  293 aacttttttatt 304  Q
    ||||||||||||    
T  50859423 aacttttttatt 50859412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 126 - 271
Target Start/End: Complemental strand, 35292835 - 35292685
Alignment:
Q  126 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattccattgtttg 220  Q
    |||||||||||||||||||||| |||||||||| ||||| ||  | |||| | || | ||||||||      ||||| |||||||||||| |||||||||    
T  35292835 tgtttggataatctaaaactaacggagcggaacggaatggagtggaatgggacgggacggaatggaacggcatggaataaaaatttcattacattgtttg 35292736  T
Q  221 gatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    ||||||  | ||||||||| |||||||||||||||||||||||||||||||    
T  35292735 gatatttcaagacggaatggaactaatttcccactccattgtttggaaagt 35292685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 466 - 580
Target Start/End: Original strand, 21262667 - 21262775
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 564  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||       ||||||||||||| ||  ||||||||||||||||||||||| ||    
T  21262667 ctcgtaataagatgcacaagtttaagaaagctttgggactcatacgaat-------tatatcataacatcgatcacttcctataatatgtttcattacct 21262759  T
Q  565 catttctaactctctc 580  Q
    ||||||||||||||||    
T  21262760 catttctaactctctc 21262775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 304
Target Start/End: Original strand, 35033173 - 35033303
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 273  Q
    ||||||| |||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||      
T  35033173 ggaatgggatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtga 35033272  T
Q  274 atggaatgaaattagttataacttttttatt 304  Q
    |||||| | ||| | |||||| |||||||||    
T  35033273 atggaacggaatgatttataatttttttatt 35033303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 13780071 - 13779943
Alignment:
Q  176 aatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgat 275  Q
    ||||||||||||| ||| |||| |||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||  ||    
T  13780071 aatggaatggaatcgagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaat 13779972  T
Q  276 ggaatgaaattagttataacttttttatt 304  Q
    |||| | ||| | |||||| |||||||||    
T  13779971 ggaacggaatgatttataatttttttatt 13779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 31229121 - 31229011
Alignment:
Q  194 ggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttata 293  Q
    |||| ||| ||||||||||| |||||||||||| || ||  ||||||||| |||||| || |||||||||||||||||||| |||| | ||| |||||||    
T  31229121 ggaataaatatttcattccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttggaaagttgacggaacggaatgagttata 31229022  T
Q  294 acttttttatt 304  Q
    || ||||||||    
T  31229021 acatttttatt 31229011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 48085339 - 48085221
Alignment:
Q  185 gaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaa 284  Q
    |||||||  |||| ||||||| |||||||||||||||||||| ||||| |||||||| ||||||| ||| ||| ||||||| ||| | || |||| | ||    
T  48085339 gaatggaacggaataaaaattacattccattgtttggatatt-tacgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaacggaa 48085241  T
Q  285 ttagttataacttttttatt 304  Q
    ||| ||||||||||||||||    
T  48085240 ttaattataacttttttatt 48085221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 304
Target Start/End: Original strand, 41222943 - 41223073
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 273  Q
    ||||||||| |||| ||| ||||| ||| ||| |||||||||||||||||| | || || |||| | ||||| ||| ||| ||||||||||||||||||     
T  41222943 ggaatggaacggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagtta 41223042  T
Q  274 atggaatgaaattagttataacttttttatt 304  Q
    | |||| | ||  ||||||||||||||||||    
T  41223043 acggaacggaacgagttataacttttttatt 41223073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 25054867 - 25054775
Alignment:
Q  212 cattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 304  Q
    |||||||||| |||| ||||| |||||| ||| ||||| |||||||||| |||| |||||||| |||||  ||| | ||||||||||||||||    
T  25054867 cattgtttgggtattttacgatggaatggaacaaatttaccactccattttttgaaaagttgacggaatagaataaattataacttttttatt 25054775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 126 - 335
Target Start/End: Original strand, 42028570 - 42028774
Alignment:
Q  126 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    ||||||||||| |||||||||| |||||||||| ||||| |||     |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42028570 tgtttggataacctaaaactaacggagcggaaccgaatggagc-----ggaatggaatggaatggagtggaacaaagatttcattccattgtttggatat 42028664  T
Q  226 tatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttcttatttatcctttacttag 325  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | | |||| ||||| |||||    
T  42028665 tatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataacttttttattccatttttacccttttcttag 42028764  T
Q  326 aaaacttcac 335  Q
    |||| |||||    
T  42028765 aaaatttcac 42028774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 126 - 304
Target Start/End: Original strand, 39439206 - 39439389
Alignment:
Q  126 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattccattgtttg 220  Q
    |||||||||||||||||||||| |||||||||  ||||| ||| | |||| | || || |||||||      ||||| ||||||||||||||||||||||    
T  39439206 tgtttggataatctaaaactaacggagcggaatggaatggagcggaatgggacgggatagaatggaacgacatggaataaaaatttcattccattgtttg 39439305  T
Q  221 gatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 304  Q
    ||||||  | ||||||||||||||||||||||||||||||||||| |||||  | |||| | ||   |||||||||||||||||    
T  39439306 gatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaacatgttataacttttttatt 39439389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 117 - 324
Target Start/End: Complemental strand, 25046263 - 25046051
Alignment:
Q  117 ttaagactttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaa-----tggaatggaatggagtggaacaaaaatttcattc 211  Q
    ||||| || |||||||||||  | ||||||| |||||||||||||||| ||| |  |||||     |||||||||| |||| ||||||||  || ||| |    
T  25046263 ttaaggctctgtttggataacatgaaactaacggagcggaacagaatggagcggagtggaactgaatggaatggaacggagcggaacaaaggttccatcc 25046164  T
Q  212 cattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttcttatt 311  Q
     |||||||||||||| ||| |||||||  ||||||||| |||||||||||||| ||||||  |||||| | ||| | |||||||||||||||| | | ||    
T  25046163 tattgtttggatattttactacggaattgaactaattttccactccattgtttagaaagtgaatggaacggaatgatttataacttttttattccatttt 25046064  T
Q  312 tatcctttactta 324  Q
    || ||||||||||    
T  25046063 taccctttactta 25046051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 172 - 324
Target Start/End: Complemental strand, 32279189 - 32279037
Alignment:
Q  172 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    |||||||||||||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||  ||||||||| |||||||||||||||||||||    
T  32279189 atggaatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagt 32279090  T
Q  272 tgatggaatgaaattagttataacttttttatttcttatttatcctttactta 324  Q
      |||||| | ||| | |||||||||||| ||| | | |||| ||||||||||    
T  32279089 gaatggaacggaatgatttataactttttcattccatttttaccctttactta 32279037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 24373430 - 24373513
Alignment:
Q  223 tattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 306  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||   ||  | ||||||||||||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaacagaacaaattataacttttttatttc 24373513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 42231737 - 42231693
Alignment:
Q  21 cttgttgttcttccattttagtgatagtgagagagtgagtttgga 65  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  42231737 cttgttgttcttccattttactgatagtgagagagtgagtttgga 42231693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 44714149 - 44714059
Alignment:
Q  176 aatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgg 266  Q
    |||||||||||  ||| ||||| ||| ||||||||| |||||||||||||| ||||| |||||| |||||||||  || || |||||||||    
T  44714149 aatggaatggagcggaatggaataaagatttcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttgg 44714059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 23420565 - 23420500
Alignment:
Q  195 gaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccatt 260  Q
    ||||||| |||| ||||||||||||||||||| || || |||||||||||||||| ||| ||||||    
T  23420565 gaacaaatattttattccattgtttggatattttatgatggaatgaaactaattttccattccatt 23420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 2144593 - 2144647
Alignment:
Q  246 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttt 300  Q
    |||| ||| |||||||||||||||||||| |||||| ||| | ||||||||||||    
T  2144593 attttccattccattgtttggaaagttgacggaatggaataaattataacttttt 2144647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 2275631 - 2275577
Alignment:
Q  195 gaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaattt 249  Q
    ||||||| |||||||||||||||||||||| | || || ||||||||| ||||||    
T  2275631 gaacaaacatttcattccattgtttggatactctaagatggaatgaaattaattt 2275577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 14568592 - 14568546
Alignment:
Q  179 ggaatggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    ||||||||||||| ||||||||| |||  ||||||||||||||||||    
T  14568592 ggaatggaatggaatggaacaaagattcaattccattgtttggatat 14568546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 20984368 - 20984318
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  20984368 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 20984318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 35231288 - 35231337
Alignment:
Q  255 tccattgtttggaaagttgatggaatgaaattagttataacttttttatt 304  Q
    ||||||||||||||| |||| |||||| ||| |||||||| |||||||||    
T  35231288 tccattgtttggaaaattgacggaatggaatgagttataatttttttatt 35231337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 24372963 - 24373035
Alignment:
Q  126 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaac 198  Q
    ||||| |||||  ||||||||| |||| ||||  ||||| ||| | ||||||||||||||||||||| |||||    
T  24372963 tgtttcgataacttaaaactaacggagtggaatggaatggagcggaatggaatggaatggaatggagcggaac 24373035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 42958311 - 42958275
Alignment:
Q  213 attgtttggatattatacgacggaatgaaactaattt 249  Q
    |||||||||||||| |||||||||| |||||||||||    
T  42958311 attgtttggatattttacgacggaaggaaactaattt 42958275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 174 - 335
Target Start/End: Complemental strand, 28219825 - 28219664
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 273  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |    
T  28219825 ggaatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtgg 28219726  T
Q  274 atggaatgaaattagttataacttttttatttcttatttatcctttacttagaaaacttcac 335  Q
    | ||||||||||||||||||||||||||||||| | |||| ||||| ||||||||| |||||    
T  28219725 acggaatgaaattagttataacttttttatttcatttttaccctttccttagaaaatttcac 28219664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 125 - 268
Target Start/End: Complemental strand, 10355042 - 10354894
Alignment:
Q  125 ttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattccattgttt 219  Q
    ||||||||||||||||||||||| ||| |||||| ||||| ||  | |||  |||| | ||||||||      ||||| |||||||||||||||||||||    
T  10355042 ttgtttggataatctaaaactaacggatcggaacggaatggagtggaatgagatgggacggaatggaacgtcatggaataaaaatttcattccattgttt 10354943  T
Q  220 ggatattatacgacggaatgaaactaatttcccactccattgtttggaa 268  Q
    |||||||  | ||||||||| ||||||||||||||||||||||||||||    
T  10354942 ggatatttcaagacggaatggaactaatttcccactccattgtttggaa 10354894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 174 - 324
Target Start/End: Original strand, 28198514 - 28198664
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 273  Q
    |||||||||||||| |||| ||||||||  || ||  | |||||||||||||| ||| |||||||| ||||||||| ||||| |||||||||||||||      
T  28198514 ggaatggaatggaacggagcggaacaaaggttccaccctattgtttggatattttactacggaatggaactaattttccacttcattgtttggaaagtga 28198613  T
Q  274 atggaatgaaattagttataacttttttatttcttatttatcctttactta 324  Q
    |||||| | ||| | |||||||||||||||| | | |||| ||||||||||    
T  28198614 atggaacggaatgatttataacttttttattccatttttaccctttactta 28198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 23701755 - 23701651
Alignment:
Q  196 aacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataac 295  Q
    |||||| |||||||||||||| || |||||| || ||| |||| | |||||||| ||| |||||||||||||||||||||| |||| ||| |||||||||    
T  23701755 aacaaagatttcattccattgcttagatattttatgacagaataagactaattttccattccattgtttggaaagttgatgaaatggaatgagttataac 23701656  T
Q  296 ttttt 300  Q
    |||||    
T  23701655 ttttt 23701651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 188 - 320
Target Start/End: Original strand, 17998987 - 17999119
Alignment:
Q  188 tggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaatta 287  Q
    |||| ||||| ||||||| ||||| |||||||||||||| || ||||||||| ||||||||||||| ||||||||||| ||||| || |||| |  |       
T  17998987 tggaatggaataaaaattacattctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgggaagt 17999086  T
Q  288 gttataacttttttatttcttatttatccttta 320  Q
    || |||||||||||||||| | |||| ||||||    
T  17999087 gtcataacttttttatttcatttttacccttta 17999119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 44247129 - 44247062
Alignment:
Q  207 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttga 274  Q
    |||||||| |||||||||||  |||| |||| |||||||| || |||||||||||||||| |||||||    
T  44247129 cattccatcgtttggatatttcacgatggaacgaaactaactttccactccattgtttgggaagttga 44247062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 12432857 - 12432911
Alignment:
Q  246 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttt 300  Q
    |||| ||| |||||||||||||||||||| |||||| ||| | ||||||||||||    
T  12432857 attttccattccattgtttggaaagttgacggaatggaataaattataacttttt 12432911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 20716587 - 20716637
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  20716587 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 20716637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 22017713 - 22017810
Alignment:
Q  207 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 304  Q
    |||||||||||| ||||| | ||| | |||||| |||||||||  || ||||||||| ||||| |||| |||| | ||| | |||||| |||||||||    
T  22017713 cattccattgttcggatactttacaatggaatgcaactaatttttcattccattgttaggaaaattgacggaacggaatgaattataatttttttatt 22017810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 126 - 335
Target Start/End: Complemental strand, 4944613 - 4944410
Alignment:
Q  126 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    ||||||||||| |||||||||| |||||||||| ||||||    ||  |||||| ||||||| ||||||||||||| ||| |||||||||||||||||||    
T  4944613 tgtttggataacctaaaactaacggagcggaacggaatga----gc--ggaatgaaatggaacggagtggaacaaagattccattccattgtttggatat 4944520  T
Q  226 tatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttcttatttatcctttacttag 325  Q
    ||||||||| |||| ||||||||||  ||||||||||||||||||| || |||||| |||||| ||||||||||||||| | | |||| ||||| |||||    
T  4944519 tatacgacgaaatggaactaatttcatactccattgtttggaaagtggacggaatggaattagatataacttttttattccatttttacccttttcttag 4944420  T
Q  326 aaaacttcac 335  Q
    ||||||||||    
T  4944419 aaaacttcac 4944410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 118 - 271
Target Start/End: Complemental strand, 11618033 - 11617875
Alignment:
Q  118 taagactttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggag-----tggaacaaaaatttcattcc 212  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||| ||| | |||| | || |  |||||||      ||||| ||||||| ||||||    
T  11618033 taaggctttgtttggataatctaaaactaacggagcgaaacagaatggagcggaatgggacgggactgaatggaacgtcatggaataaaaattccattcc 11617934  T
Q  213 attgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    |||||||| |||||  | |||||||||||||||||||||||||||||||||||||||||    
T  11617933 attgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagt 11617875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 183 - 324
Target Start/End: Complemental strand, 30085720 - 30085579
Alignment:
Q  183 tggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatga 282  Q
    ||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||  ||||||||| |||||||||||||||||||||  |||||| |     
T  30085720 tggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacgg 30085621  T
Q  283 aattagttataacttttttatttcttatttatcctttactta 324  Q
    ||| | |||||||||||||||||| | |||| ||||||||||    
T  30085620 aatgatttataacttttttatttcatttttaccctttactta 30085579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 21521572 - 21521454
Alignment:
Q  179 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 278  Q
    |||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||| |||||| ||| |||| |  | ||||||||||| |||||  | |||    
T  21521572 ggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacgga 21521473  T
Q  279 atgaaattagttataactt 297  Q
    ||| ||| | |||||||||    
T  21521472 atggaatgaattataactt 21521454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 21532138 - 21532020
Alignment:
Q  179 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 278  Q
    |||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||| |||||| ||| |||| |  | ||||||||||| |||||  | |||    
T  21532138 ggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacgga 21532039  T
Q  279 atgaaattagttataactt 297  Q
    ||| ||| | |||||||||    
T  21532038 atggaatgaattataactt 21532020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 7505285 - 7505417
Alignment:
Q  172 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    |||||| ||| |||||||||   ||| |||||||  |||||||| ||| |||| | || || |||||| | ||||||| ||| ||||||||||| |||||    
T  7505285 atggaacggagtggaatggaacagaataaaaattatattccattatttagatactttatgatggaatggagctaattttccattccattgtttgaaaagt 7505384  T
Q  272 tgatggaatgaaattagttataacttttttatt 304  Q
    ||| |||| | ||| ||||||| ||||||||||    
T  7505385 tgacggaacggaatgagttatatcttttttatt 7505417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 21018223 - 21018128
Alignment:
Q  211 ccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 306  Q
    |||||||||| ||||| || | | |||| ||||||||||| ||| | |||||||| ||||| |||||||| | ||  |||||||||||||||||||    
T  21018223 ccattgtttgaatattttatggcagaataaaactaatttctcaccctattgtttgaaaagtggatggaataagatgtgttataacttttttatttc 21018128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 15024122 - 15024025
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    |||||||||||||  ||| ||||||||||| | ||||| ||||||| | |||| |||||||||||| ||| || ||  || |||||||||| ||||||    
T  15024122 ggaatggaatggagcggaatggaacaaaaactgcattctattgtttaggtattgtacgacggaatggaacaaacttttcattccattgtttagaaagt 15024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 13190717 - 13190767
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  13190717 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 13190767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 16596790 - 16596848
Alignment:
Q  246 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 304  Q
    ||||| || ||||||||||| ||| |||||| |||| ||| ||||||||||||||||||    
T  16596790 atttctcattccattgtttgaaaaattgatgtaatggaatgagttataacttttttatt 16596848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 32233804 - 32233763
Alignment:
Q  184 ggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  32233804 ggaatggaatggaacaaagattccattccattgtttggatat 32233763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 41484381 - 41484289
Alignment:
Q  179 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    ||||| |||||||| |||||||  ||| |||| ||||||||||||||| ||||| |||| | ||| ||||   || |||||||||| ||||||    
T  41484381 ggaatagaatggagcggaacaattattccatttcattgtttggatattttacgatggaacggaacaaattattcattccattgtttagaaagt 41484289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 8099811 - 8099668
Alignment:
Q  179 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 278  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| | || |||    
T  8099811 ggaacggaacggagtggaacaaagatttcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgtttagaaaatagacgga 8099712  T
Q  279 atgaaattagttataacttttttatttcttatttatcctttactt 323  Q
    |  |||| |||||||| || ||| |||| | |||| |||||||||    
T  8099711 acaaaatgagttataa-ttgtttttttcatttttaccctttactt 8099668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 179 - 304
Target Start/End: Complemental strand, 48047124 - 48046999
Alignment:
Q  179 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 278  Q
    ||||||||| ||  ||||| |||||||||||||||||||||||| ||| || ||| ||||| |||||||||||||||||||||||||||||||  |||||    
T  48047124 ggaatggaacggtatggaataaaaatttcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatgga 48047025  T
Q  279 atgaaattagttataacttttttatt 304  Q
    | | ||   |||||||||||||||||    
T  48047024 acggaacatgttataacttttttatt 48046999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 8102100 - 8102180
Alignment:
Q  189 ggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 269  Q
    ||||||||||||| |||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  8102100 ggagtggaacaaagatttcattccattgtttgaatattaaacgatggaataaaactaatttcccactccattgtttagaaa 8102180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 34970918 - 34970846
Alignment:
Q  199 aaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    |||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  34970918 aaaaatgtcattccattgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagt 34970846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 49765674 - 49765566
Alignment:
Q  193 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttat 292  Q
    ||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||| | ||   |||||    
T  49765674 tggaaaaaaaaattcattccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtggacggaacggaaagtgttat 49765575  T
Q  293 aactttttt 301  Q
    |||||||||    
T  49765574 aactttttt 49765566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 174 - 279
Target Start/End: Complemental strand, 15582394 - 15582289
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 273  Q
    |||| |||||||||||||  |||| ||||||| |||||||||||||||||| | || || |||||| ||||||||| ||| |||||||||||||||||||    
T  15582394 ggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgtttggaaagttg 15582295  T
Q  274 atggaa 279  Q
    | ||||    
T  15582294 acggaa 15582289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 8103588 - 8103670
Alignment:
Q  178 tggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccatt 260  Q
    ||||||| || ||||||||||||| |||  ||| |||||||||||||||| || ||||||| |||||||||||||||||||||    
T  8103588 tggaatgaaacggagtggaacaaagattctatttcattgtttggatattaaacaacggaataaaactaatttcccactccatt 8103670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 357 - 441
Target Start/End: Original strand, 8102355 - 8102440
Alignment:
Q  357 aaattttggttctgcataatttgcaactagtgtatttt-cctttggcaaattaaaccaaacaataataatatagaagaattatata 441  Q
    |||||||| |||| | |||||||||||||||||||||| ||||| |||  ||||||||||| ||||||||||||||| ||||||||    
T  8102355 aaattttgattcttcgtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacgataataatatagaaggattatata 8102440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 8103869 - 8103938
Alignment:
Q  373 taatttgcaactagtgtattttcc-tttggcaaattaaaccaaacaataataatatagaagaattatata 441  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||| ||||||||    
T  8103869 taatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaaggattatata 8103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 320
Target Start/End: Complemental strand, 41419198 - 41419075
Alignment:
Q  198 caaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgg-aaagttgatggaatgaaattagttataact 296  Q
    |||| |||| ||| |||||||| |||||| |||||| |||||||||||||||| || | |||| ||||| ||| | |||||||  |||| ||||||| ||    
T  41419198 caaagattttatttcattgttttgatattttacgacagaatgaaactaatttctcattacattctttggaaaaatggatggaacaaaataagttatatct 41419099  T
Q  297 tttttatttcttatttatccttta 320  Q
    ||||||||||  ||||| ||||||    
T  41419098 tttttatttcaaatttacccttta 41419075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 41404955 - 41404868
Alignment:
Q  182 atggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 269  Q
    ||||||||||  |||| ||| ||| ||||||| |||||||||| | |||||||||||  |  |||||||||| |||||||||||||||    
T  41404955 atggaatggaacggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattccattgtttggaaa 41404868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 32573835 - 32573705
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 273  Q
    |||| |||| |||||||| ||||| ||| ||| |||||||||||||||||| | || || ||||   ||||| ||| ||| ||||||||||| ||||||     
T  32573835 ggaacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagtta 32573736  T
Q  274 atggaatgaaattagttataacttttttatt 304  Q
    |  ||| | ||  ||||||||||||||||||    
T  32573735 acagaacggaacgagttataacttttttatt 32573705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 281
Target Start/End: Original strand, 50677402 - 50677557
Alignment:
Q  121 gactttgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttg 220  Q
    |||| |||||||||||  ||||||||| ||||||||| |||||| |     |||||   ||||| |||| | ||||| | | ||| |||||||| |||||    
T  50677402 gactctgtttggataacttaaaactaacggagcggaaaagaatgga-----atggagcagaatgaaatgaaatggaatagagattacattccatcgtttg 50677496  T
Q  221 gatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatg 281  Q
    |||||| ||||| |||| | |||||| || |||||| ||||||||  ||||||| ||||||    
T  50677497 gatattttacgatggaacggaactaactttccactctattgtttgagaagttgacggaatg 50677557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 306
Target Start/End: Complemental strand, 7521819 - 7521720
Alignment:
Q  207 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 306  Q
    |||||||||||||| ||||| || || |||||| | ||||||| ||| || |||||||| ||||| ||  ||||  ||| ||||||||||| ||||||||    
T  7521819 cattccattgtttgaatattttatgatggaatggagctaattttccattctattgtttgaaaagtcgagagaattgaatgagttataacttatttatttc 7521720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 8099539 - 8099500
Alignment:
Q  357 aaattttggttctgcataatttgcaactagtgtattttcc 396  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  8099539 aaattttggttcttcgtaatttgcaactagtgtattttcc 8099500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 35306272 - 35306321
Alignment:
Q  255 tccattgtttggaaagttgatggaatgaaattagttataacttttttatt 304  Q
    ||||||||||||||| |||| |||||| ||| |||||||| |||||||||    
T  35306272 tccattgtttggaaaattgacggaatggaatgagttataatttttttatt 35306321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 42116481 - 42116522
Alignment:
Q  184 ggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  42116481 ggaatggaatggaacaaagattccattccattgtttggatat 42116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 49742110 - 49742069
Alignment:
Q  184 ggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  49742110 ggaatggaatggaacaaagattccattccattgtttggatat 49742069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 50138450 - 50138494
Alignment:
Q  206 tcattccattgtttggatattatacgacggaatgaaactaatttc 250  Q
    |||||||| ||||||||||||  ||||||||||| ||||||||||    
T  50138450 tcattccactgtttggatatttaacgacggaatggaactaatttc 50138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 207 - 306
Target Start/End: Original strand, 43496 - 43595
Alignment:
Q  207 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 306  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||  ||| | ||| ||||||||||||||||||||    
T  43496 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 43595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 207 - 306
Target Start/End: Original strand, 77216 - 77315
Alignment:
Q  207 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 306  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||  ||| | ||| ||||||||||||||||||||    
T  77216 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 77315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 306
Target Start/End: Complemental strand, 57768 - 57634
Alignment:
Q  172 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    ||||||||||| ||||| || ||||| ||| |||||||||||||||||||||| | || || |||| | ||||| ||| ||| |||||||||||||||||    
T  57768 atggaatggaacggaattgaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagt 57669  T
Q  272 tgatggaatgaaattagttataacttttttatttc 306  Q
    | | |||| | ||  ||||||||||||||||||||    
T  57668 taacggaacggaacgagttataacttttttatttc 57634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 34924018 - 34924150
Alignment:
Q  172 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    |||||||||||  |||| || ||||| ||| |||||||||||||||||||||| | || || |||| ||||||| ||| ||| |||||||||||||||||    
T  34924018 atggaatggaacagaattgaatggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttggaaagt 34924117  T
Q  272 tgatggaatgaaattagttataacttttttatt 304  Q
    | | |||| | ||  ||||||||||||||||||    
T  34924118 taacggaacggaacgagttataacttttttatt 34924150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 38680589 - 38680487
Alignment:
Q  199 aaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttt 298  Q
    ||||| |||||| ||||||||||||||| ||||| |||||  ||||||||||||||||||||| ||||||||| || |||| ||||   |||||||||||    
T  38680589 aaaaaattcatttcattgtttggatattttacgatggaattgaactaatttcccactccattgcttggaaagtggacggaacgaaaagtgttataacttt 38680490  T
Q  299 ttt 301  Q
    |||    
T  38680489 ttt 38680487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 29845070 - 29844963
Alignment:
Q  172 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 271  Q
    |||||| |||| ||||||||  |||| ||| || |||||||| ||||||||||||  | ||||||||| ||||||||||||| |||||||||||  ||||    
T  29845070 atggaacggaacggaatggaacggaataaagatatcattccactgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagt 29844971  T
Q  272 tgatggaa 279  Q
     |||||||    
T  29844970 cgatggaa 29844963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 22530288 - 22530338
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  22530288 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 22530338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 22534973 - 22535023
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  22534973 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 22535023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 25992897 - 25992947
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  25992897 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 25992947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 11355565 - 11355524
Alignment:
Q  184 ggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  11355565 ggaatggaatggaacaaagattccattccattgtttggatat 11355524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 324
Target Start/End: Complemental strand, 19626243 - 19626094
Alignment:
Q  175 gaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttga 274  Q
    ||||||||||||| | || |||| |||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||| ||||||||||||||  |    
T  19626243 gaatggaatggaacgtagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccactcaattgtttggaaagtgaa 19626144  T
Q  275 tggaatgaaattagttataacttttttatttcttatttatcctttactta 324  Q
    ||||| | ||| | |||||| ||||||||| | | |||| ||||||||||    
T  19626143 tggaacggaatgatttataatttttttattccatttttaccctttactta 19626094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 36656799 - 36656892
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgga 267  Q
    |||||| || |||||||| ||||||||||||| |||||||||| ||||||||| || ||||||||| |||||| || || ||||||||||||||    
T  36656799 ggaatgtaacggaatggaatggaacaaaaattacattccattgcttggatattttatgacggaatggaactaactttccgctccattgtttgga 36656892  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 19848565 - 19848438
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 273  Q
    |||| |||| |||||||| ||||| ||| ||| |||||||||||||||||| | || || |||| | ||||| ||| ||| ||||||||||||||||||     
T  19848565 ggaacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagtta 19848466  T
Q  274 atggaatgaaattagttataacttttttatttc 306  Q
    | |||| |     ||||||||||||||||||||    
T  19848465 acggaacg-----agttataacttttttatttc 19848438  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 126 - 304
Target Start/End: Complemental strand, 12634247 - 12634070
Alignment:
Q  126 tgtttggataatctaaaactaaaggagcggaacagaatgaagcagcatggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatat 225  Q
    |||||||||||  ||||||||| ||||||||| |||| |||  |  || ||| | ||||||| |||| |||| ||| ||| || |||| |||||||||||    
T  12634247 tgtttggataacttaaaactaacggagcggaatagaaagaatgaa-attgaacgaaatggaacggagcggaaaaaatattccactccactgtttggatat 12634149  T
Q  226 tatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 304  Q
    | || |||| |||| ||  |||||| || ||||||||||||||||| || |||| | ||| | ||||||| ||||||||    
T  12634148 tttatgacgaaatggaataaatttcacattccattgtttggaaagtcgacggaacggaatgaattataacatttttatt 12634070  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 3215179 - 3215274
Alignment:
Q  174 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 269  Q
    ||||||||  |||| ||| ||||| |||||| |||||||||||| |||||||| |  ||||||||| |||||| ||| ||||||||| ||| ||||    
T  3215179 ggaatggagcggaacggaatggaataaaaatgtcattccattgtgtggatattttctgacggaatggaactaacttctcactccattatttagaaa 3215274  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 28300772 - 28300826
Alignment:
Q  246 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttt 300  Q
    |||| ||| |||||||||||||||||||| |||||| ||| | ||||||||||||    
T  28300772 attttccattccattgtttggaaagttgacggaatggaataaattataacttttt 28300826  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 5350402 - 5350354
Alignment:
Q  258 attgtttggaaagttgatggaatgaaattagttataacttttttatttc 306  Q
    ||||||||||||||||| | |||| ||| |||||||||||||| |||||    
T  5350402 attgtttggaaagttgacgaaatggaataagttataactttttaatttc 5350354  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 306
Target Start/End: Original strand, 37864 - 37990
Alignment:
Q  179 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 278  Q
    |||||||||| || ||||| | | ||| |||||||| |||||||||||  |||| |||| | |  ||| || |||||||||||||||||||| ||| |||    
T  37864 ggaatggaatagattggaatagagattacattccatcgtttggatatttcacgatggaacggagttaactttccactccattgtttggaaagatgacgga 37963  T
Q  279 atgaaattagttataacttttttatttc 306  Q
    ||| |||   |||||| |||||||||||    
T  37964 atggaatgtattataa-ttttttatttc 37990  T

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Target: scaffold0097 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 20425 - 20475
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  20425 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 20475  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 515
Target Start/End: Complemental strand, 33092278 - 33092228
Alignment:
Q  466 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaatta 515  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  33092278 ctcgtaataaggtgcacaagtttacgaaagctttgggactcatacgaatta 33092228  T

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