View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5603-Insertion-3 (Length: 1125)

Name: NF5603-Insertion-3
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5603-Insertion-3
NF5603-Insertion-3
[»] chr6 (29 HSPs)
chr6 (405-1122)||(26828091-26828810)
chr6 (361-783)||(26640356-26640777)
chr6 (361-783)||(26746322-26746743)
chr6 (557-814)||(26627889-26628146)
chr6 (557-814)||(26733866-26734123)
chr6 (626-838)||(27702326-27702537)
chr6 (93-251)||(26746147-26746312)
chr6 (137-251)||(26640232-26640346)
chr6 (579-838)||(26853522-26853777)
chr6 (682-831)||(26966106-26966255)
chr6 (672-831)||(27714100-27714259)
chr6 (614-838)||(26890000-26890223)
chr6 (682-798)||(27422520-27422636)
chr6 (556-739)||(27652346-27652528)
chr6 (583-764)||(31291279-31291460)
chr6 (685-838)||(26651115-26651268)
chr6 (685-838)||(26757083-26757236)
chr6 (277-332)||(34150879-34150934)
chr6 (277-332)||(34163495-34163550)
chr6 (195-253)||(26828002-26828060)
chr6 (894-1000)||(26640877-26640985)
chr6 (894-1000)||(26746843-26746951)
chr6 (682-815)||(26631462-26631594)
chr6 (682-815)||(26737437-26737569)
chr6 (769-838)||(31289405-31289474)
chr6 (182-235)||(31290910-31290965)
chr6 (286-332)||(15526723-15526769)
chr6 (754-831)||(27652236-27652313)
chr6 (65-120)||(31290767-31290819)
[»] chr8 (2 HSPs)
chr8 (672-838)||(29269986-29270152)
chr8 (285-328)||(33630663-33630706)
[»] scaffold0349 (1 HSPs)
scaffold0349 (672-831)||(17685-17844)
[»] scaffold0003 (1 HSPs)
scaffold0003 (682-798)||(64727-64843)
[»] chr2 (1 HSPs)
chr2 (277-332)||(27474368-27474423)
[»] chr3 (2 HSPs)
chr3 (277-331)||(5746897-5746951)
chr3 (277-331)||(5783856-5783910)
[»] chr4 (11 HSPs)
chr4 (285-327)||(5550641-5550683)
chr4 (841-965)||(18692286-18692411)
chr4 (183-236)||(18719306-18719359)
chr4 (665-709)||(18692517-18692561)
chr4 (665-709)||(18719016-18719060)
chr4 (183-238)||(18674701-18674756)
chr4 (665-709)||(18674446-18674490)
chr4 (183-238)||(18692782-18692837)
chr4 (564-633)||(18719061-18719131)
chr4 (865-965)||(18650550-18650651)
chr4 (841-894)||(18674278-18674331)
[»] chr1 (1 HSPs)
chr1 (282-334)||(3973758-3973810)


Alignment Details
Target: chr6 (Bit Score: 558; Significance: 0; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 405 - 1122
Target Start/End: Original strand, 26828091 - 26828810
Alignment:
Q  405 tatgacttataatcttttaaatatgatgaaataaatttcatttcgttttctcattttgactgcatgtttccgttttagaacaaaaatatgttagaacttt 504  Q
    ||||||||||||||||||| || ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  26828091 tatgacttataatcttttacatctgatgtaataaatttcattacattttctcattttgactgcatgtttccgttttagaactaaaatatcttagaacttt 26828190  T
Q  505 tgttttcaagactggatcctctaatgttgaaataaagttataaacacgacgaaagtgaggtttctaacatctaccttcaatctccctatcctcattttta 604  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26828191 tgttttcaagactggatcttctaatgttgaaataaagttataaacatgacgaaagtgaggtttctaacatctaccttcaatctccctatccccattttta 26828290  T
Q  605 aaagcattctctctcataacattgaacatggagaatccattcccgttgatttcaagccagttgtcggtaatttacagaacttttctctatccaaaactaa 704  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26828291 aaaacattctctctcataacattgaacatggaaaatccattcccgttgatttcaagccagttgtcagtaatttacagaacttttctctatccaaaactaa 26828390  T
Q  705 gcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccac 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26828391 gcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccac 26828490  T
Q  805 aaaatccgtttgttgctcgaaagggcaatgagtagtctcagttgaagagctttcagaatctcaatcttagtatacaaattggattccacttgtccaagaa 904  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26828491 aaaatccgtttgttgctcgaaagggcaatgagtagtctcagttgaagagttttcagaatttcaatcttagtatacaaattggattccacttgtccaagaa 26828590  T
Q  905 gaaatgaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataaggatcagattttctgagacacaacttgtgtag-agc- 1002  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  26828591 gaaatgaagcatggaggaggacgaggttttcaccaatccatacggaaagagtaaatcagataaggatcagattttctgagacacaacttgtgtagaagca 26828690  T
Q  1003 ataacacttgtatggctcatgttacattatgattaaattg-ctttaggaatacaagtgttttgtacatacctgtgatattg--agatggttcctc-caaa 1098  Q
    ||||| | ||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||||||| ||||    
T  26828691 ataacgc-tgtatggctcatg-taca-tatgattaaattgcctttaggaatacaagtg-tttgtacata-ctgtgatattgaaagatagttcctcacaaa 26828785  T
Q  1099 tcacaa-ctatgttccatgacgtaa 1122  Q
    |||||| |||||||| |||||||||    
T  26828786 tcacaatctatgttcaatgacgtaa 26828810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 361 - 783
Target Start/End: Original strand, 26640356 - 26640777
Alignment:
Q  361 gatttctctttaatgtataacatgaattaatatttcctt-attcatatgacttataatcttttaaatatgatgaaataaatttcatttcgttttctcatt 459  Q
    |||||||||||| |||||  |||||||||| |||||||| |||| |||||| |||| || ||||||| ||||||||| ||||||||||| |||||||| |    
T  26640356 gatttctctttattgtatctcatgaattaacatttccttcattcgtatgacatatagtcgtttaaat-tgatgaaatgaatttcatttcattttctcact 26640454  T
Q  460 ttgactgcatgtttccgttttagaacaaaaatatgttagaacttttgttttcaagactggatcctctaatgttgaaataaagttataaacacgacgaaag 559  Q
    ||||||||| |||||| ||||| |||  ||| ||||||||||||||||| |||| |||||||| ||| || |||||||||||||||||||| ||| ||||    
T  26640455 ttgactgcacgtttcctttttaaaactgaaacatgttagaacttttgttatcaatactggatcttctcatattgaaataaagttataaacatgac-aaag 26640553  T
Q  560 tgaggtttctaacatctaccttcaatctccctatcctcatttttaaa-agcattctctctcataacattgaacatggagaatccattcccgttgatttca 658  Q
    ||| |||  |||||||| |||||||||||||||||| ||||||| || | | ||||| || |||||||||||||| ||||||||||||||||  ||||||    
T  26640554 tgatgttggtaacatcttccttcaatctccctatccccattttttaacaactttctcacttataacattgaacatagagaatccattcccgtcaatttca 26640653  T
Q  659 agccagttgtcggtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctg 758  Q
     ||  ||||||| |||||||| || ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||  |||||||||||||||||    
T  26640654 -gcttgttgtcgataatttacggagcttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctg 26640752  T
Q  759 gctattcgcattgtcatgcgggatg 783  Q
    |||||||||||||||||||||||||    
T  26640753 gctattcgcattgtcatgcgggatg 26640777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 361 - 783
Target Start/End: Original strand, 26746322 - 26746743
Alignment:
Q  361 gatttctctttaatgtataacatgaattaatatttcctt-attcatatgacttataatcttttaaatatgatgaaataaatttcatttcgttttctcatt 459  Q
    |||||||||||| |||||  |||||||||| |||||||| |||| |||||| |||| || ||||||| ||||||||| ||||||||||| |||||||| |    
T  26746322 gatttctctttattgtatctcatgaattaacatttccttcattcgtatgacatatagtcgtttaaat-tgatgaaatgaatttcatttcattttctcact 26746420  T
Q  460 ttgactgcatgtttccgttttagaacaaaaatatgttagaacttttgttttcaagactggatcctctaatgttgaaataaagttataaacacgacgaaag 559  Q
    ||||||||| |||||| ||||| |||  ||| ||||||||||||||||| |||| |||||||| ||| || |||||||||||||||||||| ||| ||||    
T  26746421 ttgactgcacgtttcctttttaaaactgaaacatgttagaacttttgttatcaatactggatcttctcatattgaaataaagttataaacatgac-aaag 26746519  T
Q  560 tgaggtttctaacatctaccttcaatctccctatcctcatttttaaa-agcattctctctcataacattgaacatggagaatccattcccgttgatttca 658  Q
    ||| |||  |||||||| |||||||||||||||||| ||||||| || | | ||||| || |||||||||||||| ||||||||||||||||  ||||||    
T  26746520 tgatgttggtaacatcttccttcaatctccctatccccattttttaacaactttctcacttataacattgaacatagagaatccattcccgtcaatttca 26746619  T
Q  659 agccagttgtcggtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctg 758  Q
     ||  ||||||| |||||||| || ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||  |||||||||||||||||    
T  26746620 -gcttgttgtcgataatttacggagcttttctctatccaaaactaagcatttactagttctttgactgtacattgtcaggaaaccatctgtagtgatctg 26746718  T
Q  759 gctattcgcattgtcatgcgggatg 783  Q
    |||||||||||||||||||||||||    
T  26746719 gctattcgcattgtcatgcgggatg 26746743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 557 - 814
Target Start/End: Original strand, 26627889 - 26628146
Alignment:
Q  557 aagtgaggtttctaacatctaccttcaatctccctatcctcatttttaaa-agcattctctctcataacattgaacatggagaatccattcccgttgatt 655  Q
    |||||| |||| |||||||| |||||||||||||||||| | |||||||| | |||||||||||  |   ||||||||| |||||||||||||| |||||    
T  26627889 aagtgatgtttttaacatcttccttcaatctccctatccccttttttaaataacattctctctcgcagagttgaacatgaagaatccattcccgatgatt 26627988  T
Q  656 tcaagccagttgtcggtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgat 755  Q
    ||| ||| || |||||||||||||  |||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||  |||  | |||| ||    
T  26627989 tca-gcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcat 26628087  T
Q  756 ctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgtt 814  Q
    |||||| |  ||||||||||||  ||||||||| ||||||| | || ||||||||||||    
T  26628088 ctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26628146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 557 - 814
Target Start/End: Original strand, 26733866 - 26734123
Alignment:
Q  557 aagtgaggtttctaacatctaccttcaatctccctatcctcatttttaaa-agcattctctctcataacattgaacatggagaatccattcccgttgatt 655  Q
    |||||| |||| |||||||| |||||||||||||||||| | |||||||| | |||||||||||  |   ||||||||| |||||||||||||| |||||    
T  26733866 aagtgatgtttttaacatcttccttcaatctccctatccccttttttaaataacattctctctcgcagagttgaacatgaagaatccattcccgatgatt 26733965  T
Q  656 tcaagccagttgtcggtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgat 755  Q
    ||| ||| || |||||||||||||  |||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||  |||  | |||| ||    
T  26733966 tca-gcctgtcgtcggtaatttacgcaacttttctctaaccaaaactaagtatttttttgttctttgactgtacattgtcaggaaaccacatttagtcat 26734064  T
Q  756 ctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgtt 814  Q
    |||||| |  ||||||||||||  ||||||||| ||||||| | || ||||||||||||    
T  26734065 ctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26734123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 626 - 838
Target Start/End: Complemental strand, 27702537 - 27702326
Alignment:
Q  626 ttgaacatggagaatccattcccgttgatttcaagccagttgtcggtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgact 725  Q
    |||||||||||||||||||||||| |||||||| ||| |||||| |||||||||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  27702537 ttgaacatggagaatccattcccgatgatttca-gcctgttgtctgtaatttacgcaacttttctctaaccaaaactaagtattttcttgttttttgact 27702439  T
Q  726 gtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaa 825  Q
    ||||||||||||||  | |  |||||| ||||||||||| |||||||||||||  | |||||| |||||||   | |||| |||||||| |||| |||||    
T  27702438 gtacattgtcaggaaacgacatgtagtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgttggttgttcgaa 27702339  T
Q  826 agggcaatgagta 838  Q
    ||| || ||||||    
T  27702338 aggacagtgagta 27702326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 93 - 251
Target Start/End: Original strand, 26746147 - 26746312
Alignment:
Q  93 atagttccaaagattaaaaattgcaaaatataaaaatgaaag-------tttgctgtgaaaacatttatatgtacgaacttgatggtatgatctgacaaa 185  Q
    |||||||||||||||||||||||||||| | |||||  |||        | ||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  26746147 atagttccaaagattaaaaattgcaaaaaaaaaaaaaaaaaaaaaaaattctgctgtgaaaacaattatatgtatgaacttgatggtatgatctggcaaa 26746246  T
Q  186 tggaaatggtgaatttcgtttcattactcagttttggttttgtacttccaagcctgaagttacaaa 251  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  26746247 tggaaatggagaatttcgtttcataactcagttttggttttgtacttccaagcatgaatttacaaa 26746312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 26640232 - 26640346
Alignment:
Q  137 tgctgtgaaaacatttatatgtacgaacttgatggtatgatctgacaaatggaaatggtgaatttcgtttcattactcagttttggttttgtacttccaa 236  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  26640232 tgctgtgaaaacaattatatgtatgaacttgatggtatgatctggcaaatggaaatggagaatttcgtttcataactcagttttggttttgtacttccaa 26640331  T
Q  237 gcctgaagttacaaa 251  Q
    || |||| |||||||    
T  26640332 gcatgaatttacaaa 26640346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 579 - 838
Target Start/End: Original strand, 26853522 - 26853777
Alignment:
Q  579 cttcaatctccctatcctcatttttaaaagcattctctctcataacattgaacatggagaatccattcccgttgatttcaagccagttgtcggtaattta 678  Q
    ||||||||||||||||| | |||||||||  ||||||||||||||  ||||| |||||||||||||||||   ||||||| ||| |||| ||||| ||||    
T  26853522 cttcaatctccctatcccc-tttttaaaaaaattctctctcataaagttgaaaatggagaatccattcccaacgatttca-gcctgttgacggtagttta 26853619  T
Q  679 cagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcg 778  Q
    || |||||||||||| ||||||||||| |||  |||||| |||||| || ||||||||| | ||||||||| || ||||||||||| |||||||||| |     
T  26853620 cataacttttctctaaccaaaactaagaatta-cttgttctttgaccgtgcattgtcagta-tccatctgtggtcatctggctatttgcattgtcattca 26853717  T
Q  779 ggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 838  Q
     ||| ||||| |||||| |  ||||||||||| ||| | || ||||||||||| ||||||    
T  26853718 agatatctaggggttgcgcacaccacaaaatctgttggctgttcgaaagggcagtgagta 26853777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 682 - 831
Target Start/End: Original strand, 26966106 - 26966255
Alignment:
Q  682 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 781  Q
    |||||||||| | |||||||||||| ||| |||||| |||||||||||||||||||||  ||||||||||| ||||||||||| ||| |||||||||  |    
T  26966106 aacttttctcaaaccaaaactaagcttttacttgttctttgactgtacattgtcaggacaccatctgtagtcatctggctatttgcactgtcatgcgaca 26966205  T
Q  782 tgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggca 831  Q
    ||||||| | ||||| | |||||| |||||||| |||| |||||||||||    
T  26966206 tgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggca 26966255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 672 - 831
Target Start/End: Complemental strand, 27714259 - 27714100
Alignment:
Q  672 taatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattg 771  Q
    ||||||||  |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||  |||  |||||| ||||||||||| ||||||    
T  27714259 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 27714160  T
Q  772 tcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggca 831  Q
    |||||||  | |||||| |||||||   | | || |||||||| |||| |||||||||||    
T  27714159 tcatgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggca 27714100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 614 - 838
Target Start/End: Original strand, 26890000 - 26890223
Alignment:
Q  614 tctctcataacattgaacatggagaatccattcccgttgatttcaagccagttgtcggtaatttacagaacttttctctatccaaaactaagcattttct 713  Q
    |||||||||| ||| |||||| |||||| | | ||| ||| |||| ||| ||||| ||| |||| || |||||||||||| |||||||||| |||||  |    
T  26890000 tctctcataaaattaaacatgaagaatcaagtgccgatgaattca-gcctgttgttggttatttgcacaacttttctctaaccaaaactaaacatttatt 26890098  T
Q  714 tgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgt 813  Q
    | || |||||||||||||||||||||  | ||||||||| |||||||||||   | ||||||| | ||||||||| ||||| ||| |||||| |||||||    
T  26890099 ttttatttgactgtacattgtcaggaaactatctgtagtcatctggctatttttactgtcatgggagatgtctagaggttgttcgcaccacagaatccgt 26890198  T
Q  814 ttgttgctcgaaagggcaatgagta 838  Q
      |||| || |||||||| ||||||    
T  26890199 cggttgttctaaagggcagtgagta 26890223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 682 - 798
Target Start/End: Complemental strand, 27422636 - 27422520
Alignment:
Q  682 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 781  Q
    |||||||||||| | |||||||||||||| |||||| |||| ||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||  |    
T  27422636 aacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcgaca 27422537  T
Q  782 tgtctagtggttgctcg 798  Q
    ||||||| | |||||||    
T  27422536 tgtctagagattgctcg 27422520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 556 - 739
Target Start/End: Complemental strand, 27652528 - 27652346
Alignment:
Q  556 aaagtgaggtttctaacatctaccttcaatctccctatcctcatttttaaa-agcattctctctcataacattgaacatggagaatccattcccgttgat 654  Q
    ||||||| |||||||| ||||||| | ||||||||||||| ||| |||||| | |||| |||||||| | ||||||||| |||||||| |||||   |||    
T  27652528 aaagtgatgtttctaatatctacccttaatctccctatccccatgtttaaacaacattttctctcatta-attgaacatagagaatcctttcccaacgat 27652430  T
Q  655 ttcaagccagttgtcggtaatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcagga 739  Q
    |||| ||| |||| ||||||| |||  |||||||||||| |||||||||||||||| ||||||  |||||| |||||||||||||    
T  27652429 ttca-gcctgttgccggtaatatacgcaacttttctctaaccaaaactaagcatttacttgttcattgactttacattgtcagga 27652346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 583 - 764
Target Start/End: Original strand, 31291279 - 31291460
Alignment:
Q  583 aatctccctatcctcatttttaaa-agcattctctctcataacattgaacatggagaatccattcccgttgatttcaagccagttgtcggtaatttacag 681  Q
    ||||||||||||| |||| ||||| | ||||||||| ||||| |||||||||| ||||| |||||  | ||| |||| ||| || |||||||||||||      
T  31291279 aatctccctatccacattcttaaacaacattctctcccataaaattgaacatgaagaatgcattcttgatgaattca-gcctgtagtcggtaatttacgc 31291377  T
Q  682 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctatt 764  Q
    |||||||||||| | ||||||||| ||||||||||| || || |||  |||| |||||  ||||||||| | |||||||||||    
T  31291378 aacttttctctaacaaaaactaagtattttcttgttcttcgattgtgaattgccaggaaaccatctgtaatcatctggctatt 31291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 685 - 838
Target Start/End: Original strand, 26651115 - 26651268
Alignment:
Q  685 ttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgt 784  Q
    |||||| || ||||||||| | |||  |||||| |||| ||||||||||||||||  ||||||||||| | ||| ||||  |||||||||||||  ||||    
T  26651115 ttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcgatatgt 26651214  T
Q  785 ctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 838  Q
    |||| | || |||| |||||| |||| ||| |||| ||||||||||| ||||||    
T  26651215 ctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagta 26651268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 685 - 838
Target Start/End: Original strand, 26757083 - 26757236
Alignment:
Q  685 ttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcgggatgt 784  Q
    |||||| || ||||||||| | |||  |||||| |||| ||||||||||||||||  ||||||||||| | ||| ||||  |||||||||||||  ||||    
T  26757083 ttttctttaaccaaaactacgaattaacttgttctttgtctgtacattgtcaggaaaccatctgtagtcacctgtctatgtgcattgtcatgcgatatgt 26757182  T
Q  785 ctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 838  Q
    |||| | || |||| |||||| |||| ||| |||| ||||||||||| ||||||    
T  26757183 ctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagta 26757236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 34150879 - 34150934
Alignment:
Q  277 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacattt 332  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  34150879 caatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacattt 34150934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 34163495 - 34163550
Alignment:
Q  277 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacattt 332  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  34163495 caatgagataacttggcgcgcaagttaactaattagaagtatttgcatttacattt 34163550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 26828002 - 26828060
Alignment:
Q  195 tgaatttcgtttcattactcagttttggttttgtacttccaagcctgaagttacaaact 253  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26828002 tgaatttcgtttcatagttcagttttggttttgtacttccaagcctgaagttacaaact 26828060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 894 - 1000
Target Start/End: Original strand, 26640877 - 26640985
Alignment:
Q  894 ttgtccaagaagaaatgaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataagg--atcagattttctgagacacaac 991  Q
    |||| |||||||||| |||| |||||||| || | | |||||| |||||| ||| || ||||||||||||||||||  |||||| ||||||||||| |||    
T  26640877 ttgttcaagaagaaaagaagaatggaggatgatgtgattttcatcaatccttacagagagagtaaatcagataaggatatcagagtttctgagacagaac 26640976  T
Q  992 ttgtgtaga 1000  Q
    |||||||||    
T  26640977 ttgtgtaga 26640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 894 - 1000
Target Start/End: Original strand, 26746843 - 26746951
Alignment:
Q  894 ttgtccaagaagaaatgaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataagg--atcagattttctgagacacaac 991  Q
    |||| |||||||||| |||| |||||||| || | | |||||| |||||| ||| || ||||||||||||||||||  |||||| ||||||||||| |||    
T  26746843 ttgttcaagaagaaaagaagaatggaggatgatgtgattttcatcaatccttacagagagagtaaatcagataaggatatcagagtttctgagacagaac 26746942  T
Q  992 ttgtgtaga 1000  Q
    |||||||||    
T  26746943 ttgtgtaga 26746951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 682 - 815
Target Start/End: Original strand, 26631462 - 26631594
Alignment:
Q  682 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 781  Q
    |||||||||||| ||||||| |||||||| |||| | || || |||||||| ||||||  ||||||||||| ||||||| | | |||||||| | |   |    
T  26631462 aacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caaca 26631560  T
Q  782 tgtctagtggttgctcgtaccacaaaatccgttt 815  Q
    ||||||| ||||||||| | |||| |||||||||    
T  26631561 tgtctagaggttgctcgcagcacagaatccgttt 26631594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 682 - 815
Target Start/End: Original strand, 26737437 - 26737569
Alignment:
Q  682 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 781  Q
    |||||||||||| ||||||| |||||||| |||| | || || |||||||| ||||||  ||||||||||| ||||||| | | |||||||| | |   |    
T  26737437 aacttttctctaaccaaaacaaagcatttacttgctcttggaatgtacattttcaggaagccatctgtagtcatctggccacttgcattgtcct-caaca 26737535  T
Q  782 tgtctagtggttgctcgtaccacaaaatccgttt 815  Q
    ||||||| ||||||||| | |||| |||||||||    
T  26737536 tgtctagaggttgctcgcagcacagaatccgttt 26737569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 769 - 838
Target Start/End: Original strand, 31289405 - 31289474
Alignment:
Q  769 ttgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 838  Q
    ||||||||||  |||||||||||||||||| | |||| |||||||| |||| ||||||||||| ||||||    
T  31289405 ttgtcatgcgacatgtctagtggttgctcgcagcacagaatccgttggttgttcgaaagggcagtgagta 31289474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 31290910 - 31290965
Alignment:
Q  182 caaatggaaatggtgaatttcgtttcattactc--agttttggttttgtacttcca 235  Q
    ||||||||| ||| |||||||||||||| ||||  |||||||||||||||||||||    
T  31290910 caaatggaagtggagaatttcgtttcataactcaaagttttggttttgtacttcca 31290965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 15526769 - 15526723
Alignment:
Q  286 agcttggcgcgcaagttaactaattagaagcatttgcatttacattt 332  Q
    |||||||||| ||||||||||| ||||| | ||||||||||||||||    
T  15526769 agcttggcgcacaagttaactagttagatgtatttgcatttacattt 15526723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 754 - 831
Target Start/End: Complemental strand, 27652313 - 27652236
Alignment:
Q  754 atctggctattcgcattgtcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggca 831  Q
    ||||||||||| ||||||||||| |  ||||||||   ||||||| |||||||||||| || |||| || ||||||||    
T  27652313 atctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatccattggttgttccaaagggca 27652236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 31290767 - 31290819
Alignment:
Q  65 aaacttcatcttatatcatagatcatatatagttccaaagattaaaaattgcaaaa 120  Q
    ||||||||| ||||||||||| |||   |||||| |||||||||||||||||||||    
T  31290767 aaacttcattttatatcatagttca---atagtttcaaagattaaaaattgcaaaa 31290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 672 - 838
Target Start/End: Complemental strand, 29270152 - 29269986
Alignment:
Q  672 taatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattg 771  Q
    ||||||||  |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||  |||  |||||| ||||||||||| ||||||    
T  29270152 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 29270053  T
Q  772 tcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggcaatgagta 838  Q
    |||||||  | |||||| ||||||||  | |||| ||||||||||||| ||||||||||| ||||||    
T  29270052 tcatgcgacaagtctagaggttgctcacagcacataatccgtttgttgttcgaaagggcagtgagta 29269986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 33630706 - 33630663
Alignment:
Q  285 tagcttggcgcgcaagttaactaattagaagcatttgcatttac 328  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  33630706 tagcttggcgtgcaagttaactaattagatgcatttgcatttac 33630663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 68; Significance: 9e-30; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 672 - 831
Target Start/End: Original strand, 17685 - 17844
Alignment:
Q  672 taatttacagaacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattg 771  Q
    ||||||||  |||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||  |||  |||||| ||||||||||| ||||||    
T  17685 taatttacgcaacttttctctaaccaaaactaagtattttcttgttctttgactgtacattgtcaggaaaccacatgtagtcatctggctatttgcattg 17784  T
Q  772 tcatgcgggatgtctagtggttgctcgtaccacaaaatccgtttgttgctcgaaagggca 831  Q
    |||||||  | |||||| |||||||   | | || |||||||| |||| |||||||||||    
T  17785 tcatgcgacaagtctagaggttgcttacagcgcagaatccgttggttgttcgaaagggca 17844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 682 - 798
Target Start/End: Original strand, 64727 - 64843
Alignment:
Q  682 aacttttctctatccaaaactaagcattttcttgttttttgactgtacattgtcaggagtccatctgtagtgatctggctattcgcattgtcatgcggga 781  Q
    |||||||||||| | |||||||||||||| |||||| |||| ||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||  |    
T  64727 aacttttctctaacgaaaactaagcatttacttgttctttgtctgtacattgtcaggaaaccatctgtagtcatctggctatttgcattgtcatgcgaca 64826  T
Q  782 tgtctagtggttgctcg 798  Q
    ||||||| | |||||||    
T  64827 tgtctagagattgctcg 64843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 27474368 - 27474423
Alignment:
Q  277 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacattt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27474368 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacattt 27474423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 5746951 - 5746897
Alignment:
Q  277 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacatt 331  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5746951 caatgagataacttggcgcacaagttaactaattagaagcatttgcatttacatt 5746897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 5783910 - 5783856
Alignment:
Q  277 caatgagatagcttggcgcgcaagttaactaattagaagcatttgcatttacatt 331  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5783910 caatgagataacttggcgcacaagttaactaattagaagcatttgcatttacatt 5783856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 327
Target Start/End: Original strand, 5550641 - 5550683
Alignment:
Q  285 tagcttggcgcgcaagttaactaattagaagcatttgcattta 327  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  5550641 tagcttggcgcgcaagttaactaattagatgcatttgcattta 5550683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 841 - 965
Target Start/End: Complemental strand, 18692411 - 18692286
Alignment:
Q  841 ctcagttgaagagctttcagaatctcaatcttagtatacaaattggattccact-tgtccaagaagaaatgaagcatggaggaggacgaggttttcacca 939  Q
    |||||||| |||| ||| ||||| |||||||||||| ||||||| || |||||| ||| ||||||||||  |||||||||| |||| | | | |||| ||    
T  18692411 ctcagttggagagttttgagaatttcaatcttagtagacaaattagaatccactgtgttcaagaagaaaaaaagcatggagcaggatgtgatattcatca 18692312  T
Q  940 atccgtacggaaagagtaaatcagat 965  Q
    |||| ||  ||||||| |||||||||    
T  18692311 atccttatagaaagagaaaatcagat 18692286  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 18719359 - 18719306
Alignment:
Q  183 aaatggaaatggtgaatttcgtttcattactcagttttggttttgtacttccaa 236  Q
    |||||||| ||| |||||||||||||| | ||||||||||||||||||||||||    
T  18719359 aaatggaagtggagaatttcgtttcataagtcagttttggttttgtacttccaa 18719306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 665 - 709
Target Start/End: Complemental strand, 18692561 - 18692517
Alignment:
Q  665 ttgtcggtaatttacagaacttttctctatccaaaactaagcatt 709  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  18692561 ttgtcggtaatttacacaacttttctctaaccaaaactaagcatt 18692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 665 - 709
Target Start/End: Complemental strand, 18719060 - 18719016
Alignment:
Q  665 ttgtcggtaatttacagaacttttctctatccaaaactaagcatt 709  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  18719060 ttgtcggtaatttacacaacttttctctaaccaaaactaagcatt 18719016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 18674756 - 18674701
Alignment:
Q  183 aaatggaaatggtgaatttcgtttcattactcagttttggttttgtacttccaagc 238  Q
    |||||||| ||| ||||||| |||||| | ||||||||||||||||||||||||||    
T  18674756 aaatggaagtggagaatttcatttcataaatcagttttggttttgtacttccaagc 18674701  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 665 - 709
Target Start/End: Complemental strand, 18674490 - 18674446
Alignment:
Q  665 ttgtcggtaatttacagaacttttctctatccaaaactaagcatt 709  Q
    |||| ||||||||||| |||||||||||| |||||||||||||||    
T  18674490 ttgttggtaatttacacaacttttctctaaccaaaactaagcatt 18674446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 18692837 - 18692782
Alignment:
Q  183 aaatggaaatggtgaatttcgtttcattactcagttttggttttgtacttccaagc 238  Q
    |||||||| ||| ||||||| |||||| | ||||||||||||||||||||| ||||    
T  18692837 aaatggaagtggagaatttcatttcataaatcagttttggttttgtacttctaagc 18692782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 564 - 633
Target Start/End: Complemental strand, 18719131 - 18719061
Alignment:
Q  564 gtttctaacatctaccttcaatctccctatcctca-tttttaaaagcattctctctcataacattgaacat 633  Q
    |||||||| |||||||||  |||||||||||| || ||||||| | || |||||||||||| |||||||||    
T  18719131 gtttctaatatctaccttatatctccctatccccactttttaacaacaatctctctcataaaattgaacat 18719061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 965
Target Start/End: Complemental strand, 18650651 - 18650550
Alignment:
Q  865 tcaatcttagtatacaaattggattccac-ttgtccaagaagaaatgaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcag 963  Q
    |||||||||||| |||||||||| ||||| |||| |||||||||| | ||||| ||| |||| | | | ||||||||||| ||  |||| || |||||||    
T  18650651 tcaatcttagtagacaaattggaatccactttgttcaagaagaaaagcagcatagagcaggatgtgatattcaccaatccttatagaaacagaaaatcag 18650552  T
Q  964 at 965  Q
    ||    
T  18650551 at 18650550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 841 - 894
Target Start/End: Complemental strand, 18674331 - 18674278
Alignment:
Q  841 ctcagttgaagagctttcagaatctcaatcttagtatacaaattggattccact 894  Q
    |||||||| |||| ||| ||||| |||||||||||| |||||||||| ||||||    
T  18674331 ctcagttggagagttttgagaatttcaatcttagtagacaaattggaatccact 18674278  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 3973758 - 3973810
Alignment:
Q  282 agatagcttggcgcgcaagttaactaattagaagcatttgcatttacattttc 334  Q
    ||||| |||||| ||||||||||||||||||| ||||||| ||||||| ||||    
T  3973758 agataacttggcacgcaagttaactaattagatgcatttgtatttacaatttc 3973810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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