View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5603-Insertion-4 (Length: 1068)

Name: NF5603-Insertion-4
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5603-Insertion-4
NF5603-Insertion-4
[»] chr2 (13 HSPs)
chr2 (8-1065)||(30946615-30947675)
chr2 (12-587)||(30952566-30953123)
chr2 (714-800)||(17363504-17363590)
chr2 (699-814)||(25867143-25867259)
chr2 (713-872)||(28645682-28645838)
chr2 (713-786)||(31067585-31067658)
chr2 (733-812)||(20378300-20378378)
chr2 (728-786)||(21713451-21713509)
chr2 (728-786)||(45550042-45550099)
chr2 (728-785)||(18765677-18765733)
chr2 (835-880)||(20378236-20378281)
chr2 (743-785)||(24317911-24317953)
chr2 (747-785)||(26860398-26860436)
[»] chr3 (11 HSPs)
chr3 (733-1056)||(8147357-8147693)
chr3 (714-879)||(20962068-20962233)
chr3 (715-879)||(20975996-20976160)
chr3 (728-815)||(10082344-10082431)
chr3 (728-815)||(10189269-10189356)
chr3 (733-879)||(15962279-15962419)
chr3 (767-871)||(42245063-42245164)
chr3 (742-785)||(8224854-8224897)
chr3 (742-785)||(18476945-18476987)
chr3 (755-785)||(15635974-15636004)
chr3 (728-785)||(9031482-9031538)
[»] chr7 (21 HSPs)
chr7 (728-1016)||(10259990-10260287)
chr7 (586-1015)||(15003192-15003635)
chr7 (734-879)||(9732742-9732887)
chr7 (724-872)||(9739631-9739779)
chr7 (728-785)||(23174981-23175038)
chr7 (734-815)||(21546872-21546953)
chr7 (728-786)||(5299148-5299206)
chr7 (728-785)||(30226086-30226143)
chr7 (728-878)||(2392785-2392935)
chr7 (728-785)||(3290785-3290841)
chr7 (724-785)||(13455213-13455273)
chr7 (734-785)||(48797719-48797769)
chr7 (735-785)||(15436057-15436106)
chr7 (728-785)||(2076507-2076563)
chr7 (728-785)||(2082926-2082982)
chr7 (728-785)||(14984673-14984729)
chr7 (728-785)||(15414284-15414340)
chr7 (728-785)||(15708173-15708229)
chr7 (756-785)||(23057235-23057264)
chr7 (728-785)||(24813926-24813983)
chr7 (728-785)||(26195558-26195614)
[»] chr1 (13 HSPs)
chr1 (721-879)||(50057515-50057673)
chr1 (715-878)||(19748599-19748761)
chr1 (721-878)||(951637-951794)
chr1 (724-851)||(23600449-23600576)
chr1 (728-800)||(49086677-49086749)
chr1 (763-871)||(13799962-13800067)
chr1 (755-879)||(51110383-51110502)
chr1 (182-238)||(19382064-19382120)
chr1 (756-815)||(24549304-24549362)
chr1 (733-785)||(45599430-45599481)
chr1 (713-786)||(4650312-4650384)
chr1 (181-242)||(25778014-25778075)
chr1 (728-785)||(33062387-33062443)
[»] scaffold0062 (2 HSPs)
scaffold0062 (711-879)||(2085-2253)
scaffold0062 (919-1009)||(1948-2040)
[»] scaffold0072 (1 HSPs)
scaffold0072 (711-871)||(18534-18693)
[»] chr8 (12 HSPs)
chr8 (728-877)||(24482319-24482468)
chr8 (728-878)||(32179308-32179458)
chr8 (763-871)||(14162659-14162764)
chr8 (730-785)||(23864568-23864623)
chr8 (742-785)||(37155627-37155669)
chr8 (735-785)||(8726853-8726902)
chr8 (755-785)||(12814693-12814723)
chr8 (751-785)||(24091981-24092015)
chr8 (735-785)||(39080974-39081023)
chr8 (735-800)||(16196138-16196203)
chr8 (728-785)||(17279890-17279946)
chr8 (728-785)||(33466261-33466317)
[»] chr4 (16 HSPs)
chr4 (711-872)||(13268830-13268991)
chr4 (724-877)||(13875971-13876119)
chr4 (715-871)||(17871522-17871674)
chr4 (728-877)||(11289347-11289495)
chr4 (768-867)||(15841673-15841772)
chr4 (712-815)||(19564820-19564923)
chr4 (713-786)||(11865214-11865287)
chr4 (738-815)||(13958997-13959072)
chr4 (724-785)||(24143132-24143192)
chr4 (728-785)||(25354737-25354793)
chr4 (742-779)||(10721998-10722035)
chr4 (742-779)||(10935767-10935804)
chr4 (724-785)||(19894905-19894965)
chr4 (728-785)||(21478109-21478165)
chr4 (728-785)||(23541245-23541301)
chr4 (713-786)||(24608692-24608765)
[»] chr6 (14 HSPs)
chr6 (711-877)||(28044939-28045105)
chr6 (728-879)||(32668655-32668801)
chr6 (733-878)||(3357004-3357149)
chr6 (728-879)||(26895601-26895748)
chr6 (728-871)||(12464168-12464308)
chr6 (733-872)||(13730404-13730540)
chr6 (728-867)||(13553352-13553488)
chr6 (742-779)||(28623543-28623580)
chr6 (742-785)||(34657253-34657296)
chr6 (728-785)||(15038349-15038405)
chr6 (694-786)||(16176560-16176653)
chr6 (728-779)||(20003138-20003188)
chr6 (733-779)||(22885243-22885289)
chr6 (728-785)||(16137683-16137739)
[»] chr5 (11 HSPs)
chr5 (777-879)||(17099646-17099748)
chr5 (715-879)||(15116780-15116939)
chr5 (728-785)||(17920885-17920941)
chr5 (715-800)||(19663576-19663661)
chr5 (742-779)||(22184705-22184742)
chr5 (835-879)||(19663715-19663759)
chr5 (728-785)||(11204723-11204779)
chr5 (733-786)||(24394638-24394691)
chr5 (728-785)||(26183336-26183392)
chr5 (751-785)||(22404863-22404897)
chr5 (728-785)||(7898016-7898072)
[»] scaffold0205 (1 HSPs)
scaffold0205 (721-800)||(9966-10045)
[»] scaffold0032 (1 HSPs)
scaffold0032 (734-785)||(103113-103163)
[»] scaffold0259 (1 HSPs)
scaffold0259 (721-815)||(20803-20896)
[»] scaffold0226 (1 HSPs)
scaffold0226 (751-785)||(7641-7675)
[»] scaffold0143 (1 HSPs)
scaffold0143 (728-785)||(36299-36355)


Alignment Details
Target: chr2 (Bit Score: 948; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 948; E-Value: 0
Query Start/End: Original strand, 8 - 1065
Target Start/End: Original strand, 30946615 - 30947675
Alignment:
Q  8 tatgtgcccatagatcatcatataattgaagagaccaatctttccttgaagggtttattactttttccaaaattcttttaatctctctatttgatagcac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946615 tatgtgcccatagatcatcatataattgaagagaccaatctttccttgaagggtttattactttttccaaaattcttttaatctctctatttgatagcac 30946714  T
Q  108 tctattcaacacagcttcgaacatttagctacaaaagtcagttcacccattactaatgatagttataggtgtgccaaaccttgtaaaaatattcttaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946715 tctattcaacacagcttcgaacatttagctacaaaagtcagttcacccattactaatgatagttataggtgtgccaaaccttgtaaaaatattcttaatt 30946814  T
Q  208 aagaacttggtcactacattagcgtcattagtgggatgtgccactacctatatccacttataaacataatcaacaactacaaggatataaatattgccaa 307  Q
    ||||||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946815 aagaacttggtcactaccttaatgtcattagtgggaagtgccactacctatatccacttataaacataatcaacaactacaaggatataaatattgccaa 30946914  T
Q  308 aggatggtggaaaaggacccgaaaagtctatacccaacacatcaaaaagtttcacatcaaggatgccatgttatggaatctcttgtttaattgatagatt 407  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30946915 aggatggtggaaaagaacccgaaaagtctatacccaacacatcaaaaagtttcacatcaaggatgccatgttgtggaatctcttgtttaattgatagatt 30947014  T
Q  408 tccaattccttggcatctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947015 tccaattccttggcatctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgt 30947114  T
Q  508 tctttccaccccaaaatgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcacgtaggtataacagatgttaa 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947115 tctttccaccccaaaatgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcacgtaggtataacagatgttaa 30947214  T
Q  608 acacaatgttatgacaaatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatattttaatgagataacaagaagtaaaag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947215 acacaatgttatgacaaatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatattttaatgagataacaagaagtaaaag 30947314  T
Q  708 acaaggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcat 807  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30947315 acaaggttatttgttgacctagtttggtgcaacttcacctacatctaggggctaccaagtcaggaaggaaattcactatggtaatatcaattcgaagcat 30947414  T
Q  808 acataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctctagtgtgagagatccccctccaagttcc 907  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30947415 acataaaagttttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaagactctctagtgtgagagatccccctccaagttcc 30947514  T
Q  908 tctt-atcacaaaccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaag-atcaactcgtgcttac-agcttagaagagatt 1004  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  30947515 tcttaatcacaaaccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttag-agagatt 30947613  T
Q  1005 cagagttttacacctcga-tac-aagtcc-actctgaatatcaaagtgatataaggagtggctc 1065  Q
    |||||||||||| ||||| ||| |||||| |||||| ||||||||||||||||| |||||||||    
T  30947614 cagagttttacaactcgattacaaagtccaactctg-atatcaaagtgatataa-gagtggctc 30947675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 587
Target Start/End: Original strand, 30952566 - 30953123
Alignment:
Q  12 tgcccatagatcatcatataattgaagagaccaatctttccttgaagggtttattactttttccaaaattcttttaatctctctatttgatagcactcta 111  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||    
T  30952566 tgcccatagagcatcatataattgaagagaccaatctttccctgaagggtttattactttttccaaaattgtttcaatctctctatttgatagctctcta 30952665  T
Q  112 ttcaacacagcttcgaacatttagctacaaaagtcagttcacccattactaatgatagttataggtgtgccaaaccttgtaaaaatattcttaattaaga 211  Q
    ||||||||| |||| ||||||| ||| ||||||| ||||| |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  30952666 ttcaacacaacttcaaacattttgctgcaaaagtgagttcccccattactaatcatggatataggtgtgccaaaccttgtaaaaatattcttaattaaga 30952765  T
Q  212 acttggtcactacattagcgtcattagtgggatgtgccactacctatatccacttataaacataatcaacaactacaaggatataaatattgccaaagga 311  Q
    ||||||||||||| ||| |||||||||||||| ||          || |||       |||||||||||||||||  ||||||||| |||||||||||||    
T  30952766 acttggtcactaccttaacgtcattagtgggaagt----------atttccc------aacataatcaacaactatgaggatataagtattgccaaagga 30952849  T
Q  312 tggtggaaaaggacccgaaaagtctatacccaacacatcaaaaagtttcacatcaaggatgccatgttatggaatctcttgtttaattgatagatttcca 411  Q
    ||||||||||| |||| |||||||||||||||||||||||| ||||| ||| |||||||| ||||||| ||| || |||||||| ||||||| |||||||    
T  30952850 tggtggaaaagcaccc-aaaagtctatacccaacacatcaagaagttccacttcaaggataccatgttttggcatttcttgtttgattgatacatttcca 30952948  T
Q  412 attccttggcatctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgttctt 511  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||  || |||||| |||||||||||||||||||||||||||     
T  30952949 attctttagcatctattgcaatttcttaccatagtataaacatccttaaagaaagtt-gaccaacaataacttgtttgaagaacttttgatgttgttctg 30953047  T
Q  512 tccaccccaaaatgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcac 587  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  30953048 tccatcccaaaatgtcttccataaggcgaagcatgaaaatgttgacatatttgaggaatcttttcatcataggcac 30953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 714 - 800
Target Start/End: Original strand, 17363504 - 17363590
Alignment:
Q  714 ttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 800  Q
    |||||| |||||| |||| |||||||| |||||||||||| |||| ||||||| |||||| ||||||||||||| || |||||||||    
T  17363504 ttatttgttgacccagttcggtgcaacctcacctacatctgggggttaccaagtcaggaatgaaattcactatgatagtatcaattc 17363590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 699 - 814
Target Start/End: Original strand, 25867143 - 25867259
Alignment:
Q  699 aagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaa 797  Q
    |||||||||||| | ||||||| || || |||||||||||||| |||||||||||| | |||||||| |||||||||||||| || |||| || ||| ||    
T  25867143 aagtaaaagacacaagttatttcttaacttagtttggtgcaacgtcacctacatctggaggctaccaggccaggaaggaaatccagtatgatagtattaa 25867242  T
Q  798 ttcgaagcatacataaa 814  Q
    || ||||| | ||||||    
T  25867243 tttgaagcctgcataaa 25867259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 713 - 872
Target Start/End: Complemental strand, 28645838 - 28645682
Alignment:
Q  713 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacata 812  Q
    |||||||||| ||| ||||  ||||||| |||||||||||  |||| ||||||| ||||||||||| |||||||  || ||| | || ||||||| ||||    
T  28645838 gttatttattaaccaagttctgtgcaacgtcacctacatccgggggataccaagtcaggaaggaaaatcactataatagtattagtttgaagcatgcata 28645739  T
Q  813 aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaa 872  Q
    ||| | ||   | | ||||||||||| ||  |||||||| ||||||||||||||| ||||    
T  28645738 aaaacatt---cggtctactaacttcgcagctaatcactacccgtgtaatttctatctaa 28645682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 713 - 786
Target Start/End: Complemental strand, 31067658 - 31067585
Alignment:
Q  713 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    ||||||| || ||||||||||||||||| |||||||| ||| |||||||||||  |||||||||||| ||||||    
T  31067658 gttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactat 31067585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 733 - 812
Target Start/End: Complemental strand, 20378378 - 20378300
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacata 812  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||| |||||  ||| ||||||||| |||| ||||||    
T  20378378 ggtgcaacttcacctacatctgggagctaccaagccaggaagaaaatgcacta-agtagtatcaattcaaagcgtacata 20378300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 728 - 786
Target Start/End: Complemental strand, 21713509 - 21713451
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    ||||||||||||| |||||||||| |||||||  |||| ||||||||||||| ||||||    
T  21713509 agtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactat 21713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 728 - 786
Target Start/End: Original strand, 45550042 - 45550099
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  45550042 agttcggtgcaacatcacctacatctaggggct-ccaagccaggaacgaaatccactat 45550099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 18765677 - 18765733
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  18765677 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 18765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 835 - 880
Target Start/End: Complemental strand, 20378281 - 20378236
Alignment:
Q  835 cttctcacttaatcactgcccgtgtaatttctacctaaaactctct 880  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  20378281 cttctcacttaatcactacccgtgcaatttctacctaagactctct 20378236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 743 - 785
Target Start/End: Complemental strand, 24317953 - 24317911
Alignment:
Q  743 cacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||||||| |||| |||||||||||||||||||| |||||    
T  24317953 cacctacatctgggggttaccaagccaggaaggaaatccacta 24317911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 747 - 785
Target Start/End: Complemental strand, 26860436 - 26860398
Alignment:
Q  747 tacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  26860436 tacatctgggggctaccaagccaggaaggaaatccacta 26860398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 2e-73; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 733 - 1056
Target Start/End: Complemental strand, 8147693 - 8147357
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatac-ataaaagctttcaccagcctac 831  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| | |||| || ||||||||||||    
T  8147693 ggtgcaacttcacctttatctaggggctaccaagccaggaaggaaattcactataataatatcaattcgaagcatacaaaaaaaactatcaccagcctac 8147594  T
Q  832 taacttctcacttaatcactgcccgtgtaatttctacctaaaactct-ctag-------tgtgagagatccccctccaagttcctctt-atcacaaacca 922  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||||       | |||||||||||||||| | |||||||| |||||||  ||    
T  8147593 taacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcctagatatgagagatccccctcccacttcctcttaatcacaactca 8147494  T
Q  923 gtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaag-atcaactcgtgcttac-agcttagaagagattcagagttttacacctc 1020  Q
    |||| |||||||||| ||||| |||||||||||||| | ||||  |||||| |||||||||| ||||| ||||||| ||||||||||||||||||| |||    
T  8147493 gtgatcgtccttgaaatactaacaaatatggagacactctcctgaacaaagaatcaactcgttcttacaagcttag-agagattcagagttttacaactc 8147395  T
Q  1021 ga-tac-aagtcc-actctgaatatcaaagtgatataag 1056  Q
    || ||| |||||| ||||| |||||||||||||||||||    
T  8147394 gattacaaagtccaactct-aatatcaaagtgatataag 8147357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 714 - 879
Target Start/End: Complemental strand, 20962233 - 20962068
Alignment:
Q  714 ttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataa 813  Q
    |||||| |||||| | | |||||||||||||||||||||| |||| ||||||| |||||||||||  |||||| ||| ||||||||||||||||||||||    
T  20962233 ttatttgttgacccactctggtgcaacttcacctacatctgggggttaccaagtcaggaaggaaagccactatagtagtatcaattcgaagcatacataa 20962134  T
Q  814 aagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    ||| |||||||||||| ||||||||||||||||||||| ||||||  |||||||||||| ||||||    
T  20962133 aagttttcaccagcctgctaacttctcacttaatcactacccgtggtatttctacctaagactctc 20962068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 715 - 879
Target Start/End: Complemental strand, 20976160 - 20975996
Alignment:
Q  715 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 814  Q
    ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||   || ||||||||  |||||||||||||    
T  20976160 tatttgttgacatagttcggtgcaacttcacctacatctgggggctaccaaaccaggaaggaaatccactacaatagtatcaatttaaagcatacataaa 20976061  T
Q  815 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||| ||||||    
T  20976060 agctttcaccaacctactaacttctcacttaatcactacccgtggtatttctacctaagactctc 20975996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 728 - 815
Target Start/End: Complemental strand, 10082431 - 10082344
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 815  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||| |||| |||||||||||||||    
T  10082431 agttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaattcactgtgataatattaatttgaagcatacataaaa 10082344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 728 - 815
Target Start/End: Complemental strand, 10189356 - 10189269
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 815  Q
    |||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||    
T  10189356 agttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaagcatacataaaa 10189269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 733 - 879
Target Start/End: Original strand, 15962279 - 15962419
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 832  Q
    |||||||  ||||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||| |   |  | | |||||    
T  15962279 ggtgcaatgtcacctacatctaagg-ctaccaagctaggaaggaaattcactatagtagtatcaatttgaagcatacataaaaac---cctcggtctact 15962374  T
Q  833 aacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    |   ||||||||||||||| || ||||||||||||||||| ||||||    
T  15962375 a--ctctcacttaatcactacctgtgtaatttctacctaagactctc 15962419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 767 - 871
Target Start/End: Original strand, 42245063 - 42245164
Alignment:
Q  767 ccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttc 865  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||     | |||||| ||||||||||||||||| || ||||||||||    
T  42245063 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----ggtctactatcttctcacttaatcactaccagtgtaatttc 42245158  T
Q  866 taccta 871  Q
    ||||||    
T  42245159 taccta 42245164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 742 - 785
Target Start/End: Original strand, 8224854 - 8224897
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  8224854 tcacctacatctgggggctaccaagccaggaaggaaatccacta 8224897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 785
Target Start/End: Original strand, 18476945 - 18476987
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  18476945 tcacctacatct-ggggctaccaagccaggaaggaaatccacta 18476987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 755 - 785
Target Start/End: Complemental strand, 15636004 - 15635974
Alignment:
Q  755 ggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||||||||||||||||||||||||||    
T  15636004 ggggctaccaagccaggaaggaaattcacta 15635974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 9031538 - 9031482
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  9031538 agttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 9031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 1e-71; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 728 - 1016
Target Start/End: Complemental strand, 10260287 - 10259990
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||    
T  10260287 agttcggtgcaacttcaccttcatctgggggctaccaaaccaggaaggaaattcactctagtagtatcaatttgaagcatacataaaagctttcaccagc 10260188  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct-ctag-------tgtgagagatccccctccaagttcctctt-atcacaa 918  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||       | ||||||||||| |||| | |||||||| |||||||    
T  10260187 ctactaacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcatagatatgagagatccctctcccacttcctcttaatcacaa 10260088  T
Q  919 accagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaag-atcaactcgtgcttac-agcttagaagagattcagagttttaca 1016  Q
    |||||||| || ||||||| ||||| | |||||||||||| | |||| ||||||| |||| ||||||||||| ||||||| |||||||||||||||||||    
T  10260087 accagtgatcgcccttgaaatactaac-aatatggagacactctccttgacaaagaatcacctcgtgcttacaagcttag-agagattcagagttttaca 10259990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 586 - 1015
Target Start/End: Complemental strand, 15003635 - 15003192
Alignment:
Q  586 acgtaggtataacagatgttaaacacaatgttatgacaaatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatatttta 685  Q
    ||||||||||| |||||||| ||||| |||||||||||||||| ||||| | |  ||||| ||||||||||||||  |  || ||||||| | |||||||    
T  15003635 acgtaggtatagcagatgttgaacacgatgttatgacaaatcaaatgtcgcgtaagatgtcagaacatcaggacaacaacaacaacaaataactatttta 15003536  T
Q  686 atgagataacaagaagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcact 784  Q
    || | |  ||| ||||||||||||  | || |||||||| || |||| |||||||||| || ||||||| ||| |||| |||||||||| |||||| |||    
T  15003535 attaaaggacatgaagtaaaagactcaagtaatttattgtcccagttcggtgcaactttacgtacatctggggactactaagccaggaatgaaatttact 15003436  T
Q  785 atggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct--ctag 882  Q
    || ||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||| || |||||||||| |||||  ||||    
T  15003435 atagtagtatcaattcgaagcatacataaaagctatcaccagtctactaatttctcacttaatcactacccgtgcaacttctacctaagactctcactag 15003336  T
Q  883 -------tgtgagagatccccctccaagttcctctta-tcaca-aaccagtgaccgtccttgaagtactatc-aaatatggagacattatcctagacaaa 972  Q
           | ||||||||   ||||| | ||||||||| ||||| | ||||||||||| ||| |||||||| | ||||||||||||| | ||||||| ||     
T  15003335 tcctagatatgagagattttcctcccacttcctcttagtcacagatccagtgaccgttcttcaagtactaacaaaatatggagacactctcctagaaaat 15003236  T
Q  973 g-atcaactcgtgctt-acagcttagaagagattcagagttttac 1015  Q
    | |||||||||||||| | ||||| | ||||||||||||||||||    
T  15003235 gaatcaactcgtgcttaaaagctttg-agagattcagagttttac 15003192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 734 - 879
Target Start/End: Complemental strand, 9732887 - 9732742
Alignment:
Q  734 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctacta 833  Q
    ||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||| | ||||| |||| ||||||| ||||||| || || ||||  |||||    
T  9732887 gtgcaacgtcacctagatctgggggctaccaagccatgaacgaaattcactatagcaatattaatttgaagcatgcataaaaactatctccagtgtacta 9732788  T
Q  834 acttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
     ||||||||||||||||| | |||| |||||||| |||| ||||||    
T  9732787 gcttctcacttaatcactactcgtgcaatttctatctaagactctc 9732742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 724 - 872
Target Start/End: Complemental strand, 9739779 - 9739631
Alignment:
Q  724 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 823  Q
    |||||||| |||||||| ||| ||||||||| |||||||||| ||| |||| ||||||| ||| | | ||| |||| ||||||| ||||||| || ||      
T  9739779 acctagttcggtgcaacgtcatctacatctaagggctaccaaaccaagaagaaaattcattatagcagtattaatttgaagcatgcataaaaactatcta 9739680  T
Q  824 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaa 872  Q
    ||  |||||| ||||||||||||||| | |||||| |||||||| ||||    
T  9739679 caatctactagcttctcacttaatcattacccgtgcaatttctatctaa 9739631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 23175038 - 23174981
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  23175038 agttcggtgcaacatcacctacatctaggggctaccaagccaggaaggaaatccacta 23174981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 734 - 815
Target Start/End: Complemental strand, 21546953 - 21546872
Alignment:
Q  734 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 815  Q
    |||||||||||||||||||| | ||||||||||  ||| |||||||||||||  ||| ||||||||| ||||| ||||||||    
T  21546953 gtgcaacttcacctacatctggaggctaccaagttagggaggaaattcactaaagtagtatcaattcaaagcaaacataaaa 21546872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 728 - 786
Target Start/End: Original strand, 5299148 - 5299206
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    |||||||| |||| || |||| |||||||||||||||||||||||||||||| ||||||    
T  5299148 agtttggtacaacatcgcctagatctaggggctaccaagccaggaaggaaatccactat 5299206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 30226086 - 30226143
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||||||| |||||||||||| |||||||||||| |||||    
T  30226086 agttcggtgcaacgtcacctacatctgggggctaccaagtcaggaaggaaatccacta 30226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 728 - 878
Target Start/End: Complemental strand, 2392935 - 2392785
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    |||| |||||||| |||||||| | |  |||||||||||| | ||| ||||||||||||  || ||| | || ||| |||||| |||| || || | ||     
T  2392935 agttcggtgcaacgtcacctacgtttgagggctaccaagctaagaatgaaattcactataatagtattagtttgaaacatacacaaaaactatctcaagt 2392836  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 878  Q
    |||||| |||| ||| |||||||| || |||||||||||| |||| |||||    
T  2392835 ctactagcttcacacctaatcactacctgtgtaatttctatctaacactct 2392785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 3290841 - 3290785
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||||||||| ||||| || ||| ||||||||||||||||||||||||| |||||    
T  3290841 agtttggtgcaacgtcaccaac-tctgggggctaccaagccaggaaggaaatccacta 3290785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 724 - 785
Target Start/End: Complemental strand, 13455273 - 13455213
Alignment:
Q  724 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||| |||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||    
T  13455273 acctagttcggtgcaacgtcacctac-tctgggggctaccaagcaaggaaggaaatccacta 13455213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 785
Target Start/End: Complemental strand, 48797769 - 48797719
Alignment:
Q  734 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  48797769 gtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 48797719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 735 - 785
Target Start/End: Original strand, 15436057 - 15436106
Alignment:
Q  735 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||| |||||||| |||||||||||||||||||| |||||||| |||||    
T  15436057 tgcaacgtcacctac-tctaggggctaccaagccagaaaggaaatccacta 15436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 2076507 - 2076563
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||    
T  2076507 agttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 2082926 - 2082982
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||    
T  2082926 agttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 14984673 - 14984729
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  14984673 agttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 14984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 15414284 - 15414340
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  15414284 agttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 15414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 15708173 - 15708229
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||||||||| ||||| ||||| ||| ||||||||| ||||||||||| |||||    
T  15708173 agtttggtgcaact-cacctgcatctggggtctaccaagctaggaaggaaatccacta 15708229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 756 - 785
Target Start/End: Original strand, 23057235 - 23057264
Alignment:
Q  756 gggctaccaagccaggaaggaaattcacta 785  Q
    ||||||||||||||||||||||||||||||    
T  23057235 gggctaccaagccaggaaggaaattcacta 23057264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 24813926 - 24813983
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| | ||||||||   ||||||||||||||||||||||||| |||||    
T  24813926 agttcggtgcaacatgacctacataggggggctaccaagccaggaaggaaatccacta 24813983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 26195614 - 26195558
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| ||||||||| ||||||||||| | ||||||||||||| |||| ||||||||||    
T  26195614 agttcggtgcaact-cacctacatctggaggctaccaagccaagaagaaaattcacta 26195558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 2e-55; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 721 - 879
Target Start/End: Original strand, 50057515 - 50057673
Alignment:
Q  721 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagcttt 820  Q
    |||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  50057515 ttgacccagttcagtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccactatagtaatatcaattcgaagcatacataaaagcttt 50057614  T
Q  821 caccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| ||||||    
T  50057615 caccaacctactaacttctcacttaatcactgtccgtggaatttttacctaagactctc 50057673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 715 - 878
Target Start/End: Complemental strand, 19748761 - 19748599
Alignment:
Q  715 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 814  Q
    ||||| ||||||||||| |||||||||||||||| || | | |||||||| || ||||| ||||||||||||  || |||||||||||||||||||||||    
T  19748761 tatttgttgacctagttcggtgcaacttcacctatattt-gcggctaccatgctaggaatgaaattcactataatagtatcaattcgaagcatacataaa 19748663  T
Q  815 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 878  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  19748662 agctttcaccagcctactaacttctcacttaatcactagccgtgcaatttctacctaagactct 19748599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 721 - 878
Target Start/End: Complemental strand, 951794 - 951637
Alignment:
Q  721 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagcttt 820  Q
    ||||| |||||  |||||||||||||||||| | ||||||||||| |||| ||| |||| |||||| | | ||| |||||||||||||||||||||| ||    
T  951794 ttgacatagttctgtgcaacttcacctacatatgggggctaccaatccagaaagaaaatccactatagcagtataaattcgaagcatacataaaagcctt 951695  T
Q  821 caccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 878  Q
     |||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||    
T  951694 gaccagcctactaacttctcacttaatcactacccgtggtatttctacctaagactct 951637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 724 - 851
Target Start/End: Complemental strand, 23600576 - 23600449
Alignment:
Q  724 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 823  Q
    |||||||| ||||||||||||||||||||| | |||||||||| || |||| ||||||||||| ||| |||||||||||||||| |||||||||| || |    
T  23600576 acctagttcggtgcaacttcacctacatctggaggctaccaaggcaagaagaaaattcactatagtagtatcaattcgaagcatgcataaaagctatctc 23600477  T
Q  824 cagcctactaacttctcacttaatcact 851  Q
     || | |||| |||||||||||||||||    
T  23600476 tagtccactagcttctcacttaatcact 23600449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 728 - 800
Target Start/End: Complemental strand, 49086749 - 49086677
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 800  Q
    |||| |||||||| |||||||||| | ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  49086749 agttcggtgcaacgtcacctacatgtgggggctaccaagccaggaaagaaattcactatagtagtatcaattc 49086677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 763 - 871
Target Start/End: Original strand, 13799962 - 13800067
Alignment:
Q  763 caagccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaa 861  Q
    |||| ||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||    || |||||| |||||||||||||||||  | ||||||    
T  13799962 caagtcaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----agtctactatcttctcacttaatcactaacggtgtaa 13800057  T
Q  862 tttctaccta 871  Q
    ||||||||||    
T  13800058 tttctaccta 13800067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 755 - 879
Target Start/End: Original strand, 51110383 - 51110502
Alignment:
Q  755 ggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcc 854  Q
    ||||||||||||||| |||| |||||||||| | || ||||||||  |||||||||||||| |  ||    | |||| ||||||||||||||||||| ||    
T  51110383 ggggctaccaagccaagaagaaaattcactaag-tagtatcaatttaaagcatacataaaaaccctcg---gtctac-aacttctcacttaatcactacc 51110477  T
Q  855 cgtgtaatttctacctaaaactctc 879  Q
     ||| ||||||||||||||||||||    
T  51110478 tgtgcaatttctacctaaaactctc 51110502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 19382120 - 19382064
Alignment:
Q  182 caaaccttgtaaaaatattcttaattaagaacttggtcactacattagcgtcattag 238  Q
    |||||||||||| |||||| |||||||| |||||||||||||| ||||| |||||||    
T  19382120 caaaccttgtaagaatatttttaattaaaaacttggtcactaccttagcatcattag 19382064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 756 - 815
Target Start/End: Original strand, 24549304 - 24549362
Alignment:
Q  756 gggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 815  Q
    |||||||||| |||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  24549304 gggctaccaaaccaggaaggaaattcacta-agtagtatcaattcaaagcatacataaaa 24549362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 733 - 785
Target Start/End: Complemental strand, 45599481 - 45599430
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  45599481 ggtgcaacgtcacctac-tctcggggctaccaagccaggaaggaaatccacta 45599430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 713 - 786
Target Start/End: Complemental strand, 4650384 - 4650312
Alignment:
Q  713 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    ||||||| || | ||||||  ||||||| |||||||||| |||||||| ||||| |||||||||||| ||||||    
T  4650384 gttatttgttaatctagttatgtgcaacgtcacctacatttaggggct-ccaagtcaggaaggaaatccactat 4650312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 25778014 - 25778075
Alignment:
Q  181 ccaaaccttgtaaaaatattcttaattaagaacttggtcactacattagcgtcattagtggg 242  Q
    ||||||||| ||||||| ||||| |||||||| ||||||| ||| ||| | |||||||||||    
T  25778014 ccaaaccttataaaaattttcttcattaagaatttggtcaataccttaacatcattagtggg 25778075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 33062387 - 33062443
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| |||||||||||||||| |||||||| |||||    
T  33062387 agttcggtgcaacgtcacctac-tctgggggctaccaagccagaaaggaaatccacta 33062443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 105; Significance: 7e-52; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 711 - 879
Target Start/End: Complemental strand, 2253 - 2085
Alignment:
Q  711 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 810  Q
    ||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||| || |||  || |||||||||||||||||||    
T  2253 aggttatttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagccaggaaagaaatccattatactagtatcaattcgaagcataca 2154  T
Q  811 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||| ||||||    
T  2153 taaaagctttcaccagcctactaacttctcacttaatcactacctgtggtatttctacctaagactctc 2085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 919 - 1009
Target Start/End: Complemental strand, 2040 - 1948
Alignment:
Q  919 accagtgaccgtccttgaagtac-tatcaaatatggagacattatcctagacaaag-atcaactcgtg-cttacagcttagaagagattcagag 1009  Q
    ||||||||||||||||||| | | || |||||||||||||| | ||||||| |||| ||||||||||| || | ||||||| ||||||||||||    
T  2040 accagtgaccgtccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaactcgtgcctaaaagcttag-agagattcagag 1948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 711 - 871
Target Start/End: Original strand, 18534 - 18693
Alignment:
Q  711 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 810  Q
    ||||||||| |||||| |||| ||||||||||||||||| | | ||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||    
T  18534 aggttatttgttgacccagttcggtgcaacttcacctactttt-ggggctaccaagccatgaaggaaatccactatagtagtatcaattcgaagcataca 18632  T
Q  811 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctaccta 871  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||    
T  18633 taaaatctttcaccaacctactaacttctcacttaatcactacccgtggtatttctaccta 18693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 4e-38; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 728 - 877
Target Start/End: Original strand, 24482319 - 24482468
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    ||||||||||||| |||||||||||| ||||||| |||| || |||||||||||||||| ||| |||||||||| ||||||||||||| ||||| ||||     
T  24482319 agtttggtgcaacgtcacctacatctgggggctaacaagtcaagaaggaaattcactatagtagtatcaattcgcagcatacataaaaactttctccagt 24482418  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 877  Q
    |||||| ||||||||||||||||| | |||| |||||||| |||| ||||    
T  24482419 ctactagcttctcacttaatcactactcgtgcaatttctatctaagactc 24482468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 728 - 878
Target Start/End: Original strand, 32179308 - 32179458
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    |||| ||||||||||||||||| ||| | |||||| |||  |||||| ||||||||||| | | ||| |||| ||||||||||||||| || ||  |||     
T  32179308 agttcggtgcaacttcacctacgtctggaggctacaaagttaggaagaaaattcactatagcagtattaatttgaagcatacataaaaactatcttcagt 32179407  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 878  Q
    |||| | ||||||||||||||||  |||||| |||||||| |||| |||||    
T  32179408 ctaccagcttctcacttaatcaccacccgtgcaatttctatctaagactct 32179458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 763 - 871
Target Start/End: Original strand, 14162659 - 14162764
Alignment:
Q  763 caagccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaa 861  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||    || |||||| ||||||||||||||||| || ||||||    
T  14162659 caagccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----agtctactatcttctcacttaatcactaccggtgtaa 14162754  T
Q  862 tttctaccta 871  Q
    ||||||||||    
T  14162755 tttctaccta 14162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 785
Target Start/End: Complemental strand, 23864623 - 23864568
Alignment:
Q  730 tttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||||||| |||||||||||| |||| ||||||| ||||||| |||| |||||    
T  23864623 tttggtgcaacatcacctacatctgggggataccaagtcaggaagaaaatccacta 23864568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 785
Target Start/End: Complemental strand, 37155669 - 37155627
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  37155669 tcacctac-tctgggggctaccaagccaggaaggaaattcacta 37155627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 735 - 785
Target Start/End: Original strand, 8726853 - 8726902
Alignment:
Q  735 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  8726853 tgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 8726902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 755 - 785
Target Start/End: Complemental strand, 12814723 - 12814693
Alignment:
Q  755 ggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||||||||||||||||||||||||||    
T  12814723 ggggctaccaagccaggaaggaaattcacta 12814693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 751 - 785
Target Start/End: Original strand, 24091981 - 24092015
Alignment:
Q  751 tctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||||||||||||||||||||||||| |||||    
T  24091981 tctaggggctaccaagccaggaaggaaatccacta 24092015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 735 - 785
Target Start/End: Original strand, 39080974 - 39081023
Alignment:
Q  735 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  39080974 tgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 39081023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 735 - 800
Target Start/End: Complemental strand, 16196203 - 16196138
Alignment:
Q  735 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 800  Q
    |||||| | |||||||||| ||||| |||||| || ||| ||||||||||||| || |||||||||    
T  16196203 tgcaacctaacctacatctgggggccaccaaggcatgaatgaaattcactatgatagtatcaattc 16196138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 17279890 - 17279946
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| |||| |||||||||||||||||||| |||||    
T  17279890 agttcggtgcaacgtcacctac-tctgggggataccaagccaggaaggaaatccacta 17279946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 33466317 - 33466261
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||| |||| |||||    
T  33466317 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaagaaaatccacta 33466261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 4e-38; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 711 - 872
Target Start/End: Original strand, 13268830 - 13268991
Alignment:
Q  711 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 810  Q
    ||||| ||| || ||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||  ||| |||||||| ||||||||||    
T  13268830 aggttgtttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccactacagtagtatcaatttgaagcataca 13268929  T
Q  811 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaa 872  Q
    ||||||| ||||||  ||||||||||||||||||||||| | ||||||  ||||||| ||||    
T  13268930 taaaagccttcaccgacctactaacttctcacttaatcattacccgtggtatttctaactaa 13268991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 724 - 877
Target Start/End: Original strand, 13875971 - 13876119
Alignment:
Q  724 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 823  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||| | ||       
T  13875971 acctagtttggtgcaacttaacctacatat-ggggctaccaagccaggaaggaaattcactatagtagtatcaattcaaagaatacataaaaccatt--- 13876066  T
Q  824 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 877  Q
      | |||||| ||||||||||||||||| |   || ||||||||||||| ||||    
T  13876067 -ggtctactagcttctcacttaatcactacttatgcaatttctacctaagactc 13876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 715 - 871
Target Start/End: Complemental strand, 17871674 - 17871522
Alignment:
Q  715 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 814  Q
    ||||| |||||| |||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||  ||| ||||||||| ||| |||||||||    
T  17871674 tatttcttgacccagttcggtgcaacttcacctacatctgagggctaccaagtcaggaaggaaattcacta-agtagtatcaattcaaagtatacataaa 17871576  T
Q  815 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctaccta 871  Q
    |    ||  | | |||||| |||||||| |||||||| || ||| ||||||||||||    
T  17871575 a---atcctcggtctactagcttctcacctaatcactacctgtgcaatttctaccta 17871522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 728 - 877
Target Start/End: Complemental strand, 11289495 - 11289347
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    |||| |||||||| ||||| || ||| |||| || |||||||||||| ||||||||||  | | ||| |||| |||||  |||||||| || |  | ||     
T  11289495 agttcggtgcaacgtcaccaacgtct-ggggttaacaagccaggaagaaaattcactagagcagtattaatttgaagctaacataaaaactatgtctagt 11289397  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 877  Q
    |||||| ||||||||||||||||| ||| ||||||||||| |||| ||||    
T  11289396 ctactagcttctcacttaatcactacccatgtaatttctatctaagactc 11289347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 768 - 867
Target Start/End: Original strand, 15841673 - 15841772
Alignment:
Q  768 caggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttcta 867  Q
    |||||||||||||||||||  |||||| | || ||||||||||||||| || || | || |||||| |||| ||| |||||||| |||||  ||||||||    
T  15841673 caggaaggaaattcactataataatattagtttgaagcatacataaaaactatctctagtctactagcttcgcacctaatcactacccgttcaatttcta 15841772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 712 - 815
Target Start/End: Original strand, 19564820 - 19564923
Alignment:
Q  712 ggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacat 811  Q
    |||||||| || ||| ||||||||||||| ||| |||  ||||| || |||||||||| ||||||||| ||||||  || ||||| || ||||||| |||    
T  19564820 ggttatttgttaacccagtttggtgcaacgtcatctaagtctagaggttaccaagccaagaaggaaatccactataatagtatcagtttgaagcatgcat 19564919  T
Q  812 aaaa 815  Q
    ||||    
T  19564920 aaaa 19564923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 713 - 786
Target Start/End: Complemental strand, 11865287 - 11865214
Alignment:
Q  713 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    ||||||| || ||| |||| |||||||| ||  |||| ||| |||||||||||||||||||| |||||||||||    
T  11865287 gttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaagccaggaagaaaattcactat 11865214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 738 - 815
Target Start/End: Original strand, 13958997 - 13959072
Alignment:
Q  738 aacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 815  Q
    ||||||||||||  |||||| |||||||||||||||||||||||| ||  ||| |||||| || ||||||||||||||    
T  13958997 aacttcacctacgactaggg-ctaccaagccaggaaggaaattcatta-agtagtatcaaatcaaagcatacataaaa 13959072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 724 - 785
Target Start/End: Original strand, 24143132 - 24143192
Alignment:
Q  724 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||| |||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  24143132 acctagttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 24143192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 25354793 - 25354737
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  25354793 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 25354737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 742 - 779
Target Start/End: Original strand, 10721998 - 10722035
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaat 779  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  10721998 tcacctacatctaggggttaccaatccaggaaggaaat 10722035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 742 - 779
Target Start/End: Original strand, 10935767 - 10935804
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaat 779  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  10935767 tcacctacatctaggggttaccaatccaggaaggaaat 10935804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 724 - 785
Target Start/End: Complemental strand, 19894965 - 19894905
Alignment:
Q  724 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||| |||||||| |||| ||| |||||| |||||||||||||||| ||||| |||||    
T  19894965 acctagttcggtgcaacgtcacatac-tctaggagctaccaagccaggaacgaaatccacta 19894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 21478109 - 21478165
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  21478109 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatacacta 21478165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 23541245 - 23541301
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  23541245 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 23541301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 713 - 786
Target Start/End: Original strand, 24608692 - 24608765
Alignment:
Q  713 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    ||||||| || ||| |||| |||||||| |||||||| ||| ||| |||||||||  | |||||||||||||||    
T  24608692 gttatttgttaacccagttcggtgcaacgtcacctacgtctggggactaccaagcttgaaaggaaattcactat 24608765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 5e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 711 - 877
Target Start/End: Complemental strand, 28045105 - 28044939
Alignment:
Q  711 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 810  Q
    |||||||||  ||||| |||| ||||||| ||||||||||| | |||||||||||| ||| || ||||| |||||| ||| ||||||||||||||||| |    
T  28045105 aggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatata 28045006  T
Q  811 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 877  Q
    ||||||  ||||| |||  |||||||||||||||||||||| ||||||  |||||||||||| ||||    
T  28045005 taaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc 28044939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 728 - 879
Target Start/End: Original strand, 32668655 - 32668801
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    |||| |||||||  |||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||||||||||| |||||||||| |   || | |     
T  32668655 agttcggtgcaaagtcacctacatct-ggggctaccaaac-aggaaggaaatttactatggtagtatcaattcgaagaatacataaaaac---catcggt 32668749  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
T  32668750 ctactagcttctcacttaatcactacccgtgtaatttctacctaagactctc 32668801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 733 - 878
Target Start/End: Complemental strand, 3357149 - 3357004
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 832  Q
    |||||||  ||||||| |||||||||||||||||||| ||||||||||||||||  || ||| | || ||||| ||||||||| || || |||| |||||    
T  3357149 ggtgcaatgtcacctatatctaggggctaccaagccaagaaggaaattcactataatagtattagtttgaagcgtacataaaaactatctccagtctact 3357050  T
Q  833 aacttctcacttaatcactgcccgtgtaatttctacctaaaactct 878  Q
    | |||| ||| |||||||| ||||||||||||||| |||| |||||    
T  3357049 agcttcgcacctaatcactacccgtgtaatttctatctaagactct 3357004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 728 - 879
Target Start/End: Original strand, 26895601 - 26895748
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| || ||| ||||||||| |||||||||||| | |   |  | |     
T  26895601 agtttggtgcaacttcacctacatct-ggggttaccaagccagaaaggaaattcacaatagtagtatcaattcaaagcatacataataac---cctcggt 26895696  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    |||||| ||||||||||||||||| | |||| ||||||||||||| ||||||    
T  26895697 ctactatcttctcacttaatcactactcgtgaaatttctacctaagactctc 26895748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 728 - 871
Target Start/End: Original strand, 12464168 - 12464308
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacat-aaaagctttcaccag 826  Q
    |||| ||||||||||||||||||| | || |||||| || ||||||||||||||||||  ||| ||||||||| || ||||||| |||| ||||     |    
T  12464168 agttcggtgcaacttcacctacatgtgggagctaccgagtcaggaaggaaattcactaaagtagtatcaattcaaaacatacataaaaatcttt----gg 12464263  T
Q  827 cctactaacttctcacttaatcactgcccgtgtaatttctaccta 871  Q
     |||||| ||||||||||||||||| |||||| ||||||||||||    
T  12464264 tctactagcttctcacttaatcactacccgtgcaatttctaccta 12464308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 733 - 872
Target Start/End: Complemental strand, 13730540 - 13730404
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 832  Q
    |||| |||||||| ||  ||| |||||||||| || |||||||||||||||||| ||  |||||| ||||||||||||||||| |   | |||| ||| |    
T  13730540 ggtgaaacttcacttatgtctgggggctaccatgctaggaaggaaattcactatagtggtatcaactcgaagcatacataaaaac---cgccagtctaat 13730444  T
Q  833 aacttctcacttaatcactgcccgtgtaatttctacctaa 872  Q
    |  |||||||||||||| | ||||| ||||||||||||||    
T  13730443 agattctcacttaatcattacccgtctaatttctacctaa 13730404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 728 - 867
Target Start/End: Original strand, 13553352 - 13553488
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 827  Q
    |||| |||||||| |||||||| | | |||||||||| |||||||||||||||||||||  || ||| | || ||||||||||||||| |   || | |     
T  13553352 agttgggtgcaacatcacctacgtttgggggctaccatgccaggaaggaaattcactataatagtattattttgaagcatacataaaaac---catcggt 13553448  T
Q  828 ctactaacttctcacttaatcactgcccgtgtaatttcta 867  Q
    |||||||||||  || |||||||| || ||||||||||||    
T  13553449 ctactaacttcgtacctaatcactacctgtgtaatttcta 13553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 742 - 779
Target Start/End: Original strand, 28623543 - 28623580
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaat 779  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28623543 tcacctacatctaggggctaccaagccaggaaggaaat 28623580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 742 - 785
Target Start/End: Complemental strand, 34657296 - 34657253
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  34657296 tcacctacatctaggggctaccaagccaagaaggaaatccacta 34657253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 15038349 - 15038405
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  15038349 agtttggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 15038405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 694 - 786
Target Start/End: Original strand, 16176560 - 16176653
Alignment:
Q  694 acaagaagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    ||||||||||||||||| | | | ||| || ||| ||||| |||| ||||||||||| |||   ||||||||||||||||||||| ||||||||    
T  16176560 acaagaagtaaaagacacaaggtgtttgttaacccagtttagtgcgacttcacctacgtctgcaggctaccaagccaggaaggaatttcactat 16176653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 779
Target Start/End: Original strand, 20003138 - 20003188
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaat 779  Q
    |||| |||||||| |||||||| | |||||||||||||||||||||||||||    
T  20003138 agttcggtgcaacgtcacctactt-taggggctaccaagccaggaaggaaat 20003188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 733 - 779
Target Start/End: Complemental strand, 22885289 - 22885243
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaat 779  Q
    |||||||| |||||||||||| |||||  ||||||||||||||||||    
T  22885289 ggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaat 22885243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 16137739 - 16137683
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||| |||||| |||||||| |||  |||||||||||||||||||||||| |||||    
T  16137739 agtttgatgcaacgtcacctac-tctgagggctaccaagccaggaaggaaatccacta 16137683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 8e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 777 - 879
Target Start/End: Complemental strand, 17099748 - 17099646
Alignment:
Q  777 aattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaact 876  Q
    |||||||| | ||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||  |||||| ||||||||||||| |||    
T  17099748 aattcactgtagtagtatcaattcgaagtatacataaaagctatcaccagcctacgaacttctcacttaatcaccacccgtgcaatttctacctaagact 17099649  T
Q  877 ctc 879  Q
    |||    
T  17099648 ctc 17099646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 715 - 879
Target Start/End: Original strand, 15116780 - 15116939
Alignment:
Q  715 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 814  Q
    ||||| |||||| ||||  ||||||| |||||||| ||| |||||||||||| ||||||||||||||||||  ||| ||||||||| || ||||||||||    
T  15116780 tatttgttgacccagttcagtgcaacctcacctacgtctgggggctaccaagtcaggaaggaaattcacta-agtattatcaattcaaatcatacataaa 15116878  T
Q  815 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    | |   |  | | |||| ||||||||||||||||||  |||||| ||||||||||||| ||||||    
T  15116879 aac---cctcggtctac-aacttctcacttaatcaccacccgtgcaatttctacctaagactctc 15116939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 17920941 - 17920885
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  17920941 agttcggtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaatccacta 17920885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 715 - 800
Target Start/End: Original strand, 19663576 - 19663661
Alignment:
Q  715 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 800  Q
    ||||| |||||| |||| |||||||| |||||||||| |  ||||||| |||||| ||| ||||||||||||| || |||||||||    
T  19663576 tatttgttgacccagttcggtgcaacctcacctacatatgcgggctacaaagccatgaatgaaattcactatgatagtatcaattc 19663661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 742 - 779
Target Start/End: Complemental strand, 22184742 - 22184705
Alignment:
Q  742 tcacctacatctaggggctaccaagccaggaaggaaat 779  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22184742 tcacctacatctaggggctaccaagccaggaaggaaat 22184705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 835 - 879
Target Start/End: Original strand, 19663715 - 19663759
Alignment:
Q  835 cttctcacttaatcactgcccgtgtaatttctacctaaaactctc 879  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  19663715 cttctcacttaatcactacccgtgtaatttctacctaagactctc 19663759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 11204723 - 11204779
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  11204723 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 11204779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 733 - 786
Target Start/End: Original strand, 24394638 - 24394691
Alignment:
Q  733 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 786  Q
    |||||||| |||||||||||| |||||  |||||||||||||||||| ||||||    
T  24394638 ggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatccactat 24394691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 26183392 - 26183336
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  26183392 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatacacta 26183336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 751 - 785
Target Start/End: Complemental strand, 22404897 - 22404863
Alignment:
Q  751 tctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||||||||||||||||||||||||| |||||    
T  22404897 tctaggggctaccaagccaggaaggaaatccacta 22404863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 7898072 - 7898016
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  7898072 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 7898016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 721 - 800
Target Start/End: Original strand, 9966 - 10045
Alignment:
Q  721 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 800  Q
    |||||| |||| |||||||| | |||||||||| |||||||| |||||||||||||||||||||||  || |||||||||    
T  9966 ttgacccagttcggtgcaacctaacctacatctgggggctacaaagccaggaaggaaattcactataatagtatcaattc 10045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 734 - 785
Target Start/End: Original strand, 103113 - 103163
Alignment:
Q  734 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  103113 gtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaatccacta 103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 721 - 815
Target Start/End: Complemental strand, 20896 - 20803
Alignment:
Q  721 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 815  Q
    ||||||||||| ||||||||||||||||  | | || | ||||||| |||||||||||||||| |  ||| ||||||||| ||||| ||||||||    
T  20896 ttgacctagttcggtgcaacttcacctatgtgtgggagttaccaagtcaggaaggaaattcacca-agtagtatcaattcaaagcaaacataaaa 20803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 751 - 785
Target Start/End: Complemental strand, 7675 - 7641
Alignment:
Q  751 tctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||||||||||||||||||||||||||||||||||    
T  7675 tctaggggctaccaagccaggaaggaaattcacta 7641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 785
Target Start/End: Original strand, 36299 - 36355
Alignment:
Q  728 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 785  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||| |||| |||||    
T  36299 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaagaaaatccacta 36355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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