View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5603-Insertion-5 (Length: 655)
Name: NF5603-Insertion-5
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5603-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 29965455 - 29965886
Alignment:
| Q |
8 |
aagggctcaacacttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaataggtccataaaggacattattatgcttgtattcaacaa |
107 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29965455 |
aagggctcaacatttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaataggtccataaaggacattattatgcttgtattcaacaa |
29965554 |
T |
|
| Q |
108 |
gtttattactggtaaagatgttataagttggtctaatggtgcttgaatagattaagttaatgagtattgctagtttttattatatgttaatagccaacat |
207 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29965555 |
gtttattactagtaaagatgttataagttggtctaatggtgcttgaatagaataagttaatgagtattgctagtttttattatatgttaatagccaacat |
29965654 |
T |
|
| Q |
208 |
atgaataaattaggagtga---------agaaattatcagttaattgcttattgaataagtgtttatcatacaagtgtttatgtatatgatcagttattc |
298 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29965655 |
atgaataaattaggagtgaagaaattagagaaattatcagttaattgcttattgaataagtgtttatcatacaagtgtttatgtatatgatcagttattc |
29965754 |
T |
|
| Q |
299 |
caataattaaagtgataatccggtccactattttcaaataacttgtaactgannnnnnnaaagttgtcatagagtgctaattcaacctatgacatcaggt |
398 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29965755 |
caataattaaagtgataatccggtccactattttcaactaacttgtaactgattttcttaaatttgtcatagagtgctaattcaacctatgacatcaggt |
29965854 |
T |
|
| Q |
399 |
tgaccatggtatgaagaattagttcactggtt |
430 |
Q |
| |
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| || ||||||||||||||||||||||||||| |
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| T |
29965855 |
tcacaatggtatgaagaattagttcactggtt |
29965886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 30009343 - 30008912
Alignment:
| Q |
8 |
aagggctcaacacttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaataggtccataaaggacattattatgcttgtattcaacaa |
107 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30009343 |
aagggctcaacatttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaataggtccataaaggacattattatgcttgtattcaacaa |
30009244 |
T |
|
| Q |
108 |
gtttattactggtaaagatgttataagttggtctaatggtgcttgaatagattaagttaatgagtattgctagtttttattatatgttaatagccaacat |
207 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009243 |
gtttattactagtaaagatgttataagttggtctaatggtgcttgaatagaataagttaatgagtattgctagtttttattatatgttaatagccaacat |
30009144 |
T |
|
| Q |
208 |
atgaataaattaggagtgaagaa---------attatcagttaattgcttattgaataagtgtttatcatacaagtgtttatgtatatgatcagttattc |
298 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009143 |
atgaataaattaggagtgaagaaattagagaaattatcagttaattgcttattgaataagtgtttatcatacaagtgtttatgtatatgatcagttattc |
30009044 |
T |
|
| Q |
299 |
caataattaaagtgataatccggtccactattttcaaataacttgtaactgannnnnnnaaagttgtcatagagtgctaattcaacctatgacatcaggt |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30009043 |
caataattaaagtgataatccggtccactattttcaactaacttgtaactgattttcttaaatttgtcatagagtgctaattcaacctatgacatcaggt |
30008944 |
T |
|
| Q |
399 |
tgaccatggtatgaagaattagttcactggtt |
430 |
Q |
| |
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| || ||||||||||||||||||||||||||| |
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| T |
30008943 |
tcacaatggtatgaagaattagttcactggtt |
30008912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 441 - 655
Target Start/End: Original strand, 29966203 - 29966418
Alignment:
| Q |
441 |
tcaaaacaacttttaggttgtgaaagtataaatacagattttcatgcaattataacataagcgatgcctaaaattctagaaattagaggaacaaataaat |
540 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29966203 |
tcaagacaacttttaggttgtgaaagtataaatacagattttcatgcaattataacataagggatgcctaaaattctagaaattagaggaacaaataaat |
29966302 |
T |
|
| Q |
541 |
aatttgattagaggaaatattggaagtggtgttttcatagtactgaatagtttgattcacc-taaaaaactccatcaattttaaaaatttatcattagct |
639 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29966303 |
aatttgattagaggaaatattggaagtagtgttttcatagtactgaatagtttgattcaccataaaaaactccatcaattttaaaaatttatcattagct |
29966402 |
T |
|
| Q |
640 |
gagcaaaggtttgtat |
655 |
Q |
| |
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||| ||||||||||| |
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| T |
29966403 |
gagttaaggtttgtat |
29966418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 441 - 655
Target Start/End: Complemental strand, 30008595 - 30008380
Alignment:
| Q |
441 |
tcaaaacaacttttaggttgtgaaagtataaatacagattttcatgcaattataacataagcgatgcctaaaattctagaaattagaggaacaaataaat |
540 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
30008595 |
tcaagacaacttttaggttgtgaaagtataaatacagattttcatgcaattataacataagggatgcctaaaattctagaaattagaggaacaaataaat |
30008496 |
T |
|
| Q |
541 |
aatttgattagaggaaatattggaagtggtgttttcatagtactgaatagtttgattcacc-taaaaaactccatcaattttaaaaatttatcattagct |
639 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30008495 |
aatttgattagaggaaatattggaagtagtgttttcatagtactgaatagtttgattcaccataaaaaactccatcaattttaaaaatttatcattagct |
30008396 |
T |
|
| Q |
640 |
gagcaaaggtttgtat |
655 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
30008395 |
gagttaaggtttgtat |
30008380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 29954191 - 29954296
Alignment:
| Q |
12 |
gctcaacacttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaataggtccataaaggacattattatgcttgtattcaacaagttt |
111 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||| ||||||||| | | |||||||||| || ||||||| |||||||||||||| ||| |||||| |
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|
| T |
29954191 |
gctcaacacttgcatgtaataccgacttatcgtttggcatgtgatgacagggttgaataggttcaagaaggacaatattatgcttgtatgcaataagttt |
29954290 |
T |
|
| Q |
112 |
attact |
117 |
Q |
| |
|
|||||| |
|
|
| T |
29954291 |
attact |
29954296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 29945258 - 29945376
Alignment:
| Q |
12 |
gctcaacacttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaa---taggtccataaaggacattattatgcttgtattcaacaag |
108 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||| | |||||| ||||||||| ||| |||| | ||||| ||||||| ||| |||||||||| |
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| T |
29945258 |
gctcaacacttacacgcaataccaagttatcgtttggcaggtgatggcaagcttgaatagtagttccaagagggacaatattatgtttgcattcaacaag |
29945357 |
T |
|
| Q |
109 |
tttattactggtaaagatg |
127 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
29945358 |
gttattactagtaaagatg |
29945376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 29947227 - 29947261
Alignment:
| Q |
8 |
aagggctcaacacttgcacgcaataccgagttatc |
42 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
29947227 |
aagggctcaacacttgcacgcaataccgagttatc |
29947261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 3423923 - 3423891
Alignment:
| Q |
253 |
aataagtgtttatcatacaagtgtttatgtata |
285 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
3423923 |
aataagtgcttatcatacaagtgtttatgtata |
3423891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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