View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5603_high_10 (Length: 228)
Name: NF5603_high_10
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5603_high_10 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 48456095 - 48455865
Alignment:
| Q |
1 |
tcatcaactacacgtgtgaaaggcatatactggatagaaaacccacttttccctccagcttccatagatacatcacttttcactcacattttctacgctt |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48456095 |
tcatcaaccacacgtgtgaaaggcatatactggatagaaaacccacttttccctccatcttccatagatacatcacttttcactcacattttctacgctt |
48455996 |
T |
|
| Q |
101 |
ttgtttcacccaacaaattcacttataagctagaagaagaag---aagattcaacaactgtagccacctccctcactactttcaccaacactttcaaaac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48455995 |
ttgtttcacccaacaaattcacttataagctagaagaagaagaagaagattcaacaactgtagccacctccctcactactttcaccaacactttcaaaac |
48455896 |
T |
|
| Q |
198 |
taaaacccctcccattcctaccctcctttcc |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48455895 |
taaaacccctcccattcctaccctcctttcc |
48455865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 48461539 - 48461444
Alignment:
| Q |
1 |
tcatcaactacacgtgtgaaaggcatatactggatagaaaacccacttttccctccagcttccatagatacatcacttttcactcacattttctac |
96 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||||||| ||| ||||||||||| || | |||| |||||||| || |||||||| |||||| |
|
|
| T |
48461539 |
tcatcaatcacacgtgtgaaaggtatttactggttagaaaatccatttttccctccaactacagtagacacatcactctttactcacatcttctac |
48461444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University