View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5603_high_3 (Length: 412)
Name: NF5603_high_3
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5603_high_3 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 224 - 412
Target Start/End: Original strand, 9611338 - 9611526
Alignment:
| Q |
224 |
tttttagtaaactgtacccaaagttttagtggaagaaaaagatgactcaccataacaaccaaaggagaagcatacattgctattgccacccccaatccta |
323 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9611338 |
tttttagtaaactgtacccaaaatttgagtggaagaaaaagatgactcaccataacaaccaaaggagaagcatacattgctattgacacccccaatccta |
9611437 |
T |
|
| Q |
324 |
cactaccaacaagttgctttctgtgactatgatcagggaatgcaaaagctgatgcaagagcaatggcacagaacactagaagaactggt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9611438 |
cactaccaacaagttgctttctgtgactatgatcagggaaggcaaaagctgatgcaagagcaatggcacagaacactagaagaattggt |
9611526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 9610625 - 9610817
Alignment:
| Q |
12 |
atccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataatggtagtggcaggaattccaaactctttgtttgtatc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
9610625 |
atccctaatgagaagtccataagtaagccacaatacactagccaagaatgaacacaatgataaaggtagtggcatgaattccacactctttgtttgtatc |
9610724 |
T |
|
| Q |
112 |
actttcttctgcaataaccaaattcaaaattatgtaagttgatgaatataatttacaaaatccatattaaaataaaatatgaagctaaactca |
204 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| || | |||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
9610725 |
acttttttctgcaataaccaaattcaaaattatgaaagttaataattataatttacaaaaaccatattaaaataaaatatgaagctatactca |
9610817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 33716427 - 33716533
Alignment:
| Q |
228 |
tagtaaactgtacccaaagttttagtggaagaaaaagatgactcaccataacaaccaaaggagaagcatacattgctattgccacccccaatcctacact |
327 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||| | |
|
|
| T |
33716427 |
tagtaaactgtacccaaaatttgagtggaagaaaaagatgactcaccataaaaactaaaggagaagcatacatttctattgacacccccaatcctacaat |
33716526 |
T |
|
| Q |
328 |
accaaca |
334 |
Q |
| |
|
||||||| |
|
|
| T |
33716527 |
accaaca |
33716533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 41307749 - 41307667
Alignment:
| Q |
43 |
aatacactagccaagaatgaacacaatgataatggtagtggcaggaattccaaactctttgtttgtatcactttcttctgcaa |
125 |
Q |
| |
|
||||||||||| | || | |||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41307749 |
aatacactagctgaaaaagcacacaaagataatggtagtggcatgaattccacactctttgtttgtatcactttcttctgcaa |
41307667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 41297834 - 41297763
Alignment:
| Q |
63 |
acacaatgataatggtagtggcaggaattccaaactctttgtttgtatcactttcttctgcaataaccaaat |
134 |
Q |
| |
|
|||||| |||||||||||||||| |||||| | ||||||||||| ||| |||||||||||||| || ||||| |
|
|
| T |
41297834 |
acacaaggataatggtagtggcatgaattcaacactctttgtttctataactttcttctgcaaaaatcaaat |
41297763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University