View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5603_low_1 (Length: 531)

Name: NF5603_low_1
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5603_low_1
NF5603_low_1
[»] chr8 (1 HSPs)
chr8 (6-513)||(38523971-38524478)
[»] chr3 (6 HSPs)
chr3 (339-415)||(43460651-43460727)
chr3 (169-245)||(21007763-21007839)
chr3 (199-244)||(218045-218090)
chr3 (146-210)||(51667074-51667139)
chr3 (169-241)||(40339076-40339148)
chr3 (142-189)||(41115456-41115504)
[»] chr2 (3 HSPs)
chr2 (59-184)||(4908737-4908863)
chr2 (197-229)||(14110589-14110621)
chr2 (167-243)||(42982443-42982519)
[»] chr7 (1 HSPs)
chr7 (68-224)||(45369070-45369227)
[»] chr6 (1 HSPs)
chr6 (64-241)||(29240468-29240646)
[»] chr5 (1 HSPs)
chr5 (199-241)||(35108130-35108172)
[»] chr4 (1 HSPs)
chr4 (168-241)||(47596416-47596490)
[»] scaffold0393 (1 HSPs)
scaffold0393 (142-182)||(12401-12442)
[»] chr1 (1 HSPs)
chr1 (50-210)||(41517203-41517364)


Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 6 - 513
Target Start/End: Original strand, 38523971 - 38524478
Alignment:
Q  6 agtgagatgaacgtaaagtggtttacatttgtatacaattatgaaaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaact 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38523971 agtgagatgaacgtaaagtggtttacatttgtatacaattatgaaaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaact 38524070  T
Q  106 tcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgagaactccaaacatgtcaaaatcagttctccttctttgaaatcaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38524071 tcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgagaactccaaacatgtcaaaatcagttctccttctttgaaataaa 38524170  T
Q  206 ttttgacttctccaaaagttaaaccaaagatacactaaaatcatgcaaataagttgttttaaatagtttatttaatacatatcagggaggggggaattga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38524171 ttttgacttctccaaaagttaaaccaaagatacactaaaatcatgcaaataagttgttttaaatagtttatttaatacatatcagggaggggggaattga 38524270  T
Q  306 aaagggtgatgaattatgactataccaaaagtgaaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaaca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38524271 aaagggtgatgaattatgactataccaaaagtgaaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaaca 38524370  T
Q  406 gccatgatgcaagatcaagtgcaatcttcctatcccccttggttgtagaatccatatcgaaacctaactttcttatctgcatagaaggagaaaaaacgtc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38524371 gccatgatgcaagatcaagtgcaatcttcctatcccccttggttgtagaatccatatcgaaacctaactttcttatctgcatagaaggagaaaaaacgtc 38524470  T
Q  506 gtcagaag 513  Q
    ||||||||    
T  38524471 gtcagaag 38524478  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 415
Target Start/End: Original strand, 43460651 - 43460727
Alignment:
Q  339 aaaccatatgtagccatcagggctttgttcacaaggattattcctacagatgtgactacattgaacagccatgatgc 415  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||| || || || || |||| |||||||||    
T  43460651 aaaccatatgtggccatcagggctttgttcacaaggattattcccacagacgtaacgacgttaaacaaccatgatgc 43460727  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 21007763 - 21007839
Alignment:
Q  169 aaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacactaaaa 245  Q
    |||||||||||||||| || |   ||||| |||||||||||| || |||||||||| |||||||| || ||||||||    
T  21007763 aaacatgtcaaaatcaattatatatctttaaaatcaattttggctcctccaaaagtgaaaccaaatatccactaaaa 21007839  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 218045 - 218090
Alignment:
Q  199 aaatcaattttgacttctccaaaagttaaaccaaagatacactaaa 244  Q
    |||||||||||| ||| ||||||||| |||||||| ||||||||||    
T  218045 aaatcaattttgccttatccaaaagtgaaaccaaacatacactaaa 218090  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 51667139 - 51667074
Alignment:
Q  146 aatcaattttacttgagaac-tccaaacatgtcaaaatcagttctccttctttgaaatcaattttg 210  Q
    |||||||| ||||||||| | || ||||||||||||||||||| | | ||||| ||||||||||||    
T  51667139 aatcaattatacttgagagcatcaaaacatgtcaaaatcagttgtacatctttaaaatcaattttg 51667074  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 40339148 - 40339076
Alignment:
Q  169 aaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacact 241  Q
    |||||||||||||||| || | || || | |||||||||||| |   |||||||||||||||||| |||||||    
T  40339148 aaacatgtcaaaatcaattatactcctctaaaatcaattttggcccttccaaaagttaaaccaaacatacact 40339076  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 41115456 - 41115504
Alignment:
Q  142 gcaaaatcaattttacttgagaac-tccaaacatgtcaaaatcagttct 189  Q
    |||||||||||| ||||| | ||| ||||||||||||||||||||||||    
T  41115456 gcaaaatcaattctactttaaaacatccaaacatgtcaaaatcagttct 41115504  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 4908863 - 4908737
Alignment:
Q  59 ttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttact 158  Q
    |||||||||||| | |||  | ||||| ||||||||| || ||| || |||||||||||||   |||| ||| | ||||||| |||||||||||| ||||    
T  4908863 ttgaacaataaagttaaggctgaaaatcaattgtagaagccaaatctacaaattttagctttaagttagaataaattcggaaggcaaaatcaattctact 4908764  T
Q  159 tgagaac-tccaaacatgtcaaaatca 184  Q
     || ||| | |||||||||||||||||    
T  4908763 cgaaaacatacaaacatgtcaaaatca 4908737  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 14110621 - 14110589
Alignment:
Q  197 tgaaatcaattttgacttctccaaaagttaaac 229  Q
    |||||||||||||||||||||||||||| ||||    
T  14110621 tgaaatcaattttgacttctccaaaagtgaaac 14110589  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 42982519 - 42982443
Alignment:
Q  167 ccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacactaa 243  Q
    ||||||||||||||||||||||| | | |||  ||| ||||| || | ||||||||||  ||||||| |||||||||    
T  42982519 ccaaacatgtcaaaatcagttctacatgtttagaattaatttggattcctccaaaagtggaaccaaacatacactaa 42982443  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 45369227 - 45369070
Alignment:
Q  68 aaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgagaac-t 166  Q
    ||||||||  ||| |||| |||| ||||||| ||| || | |||| |||||||  |||||||| | |||   | |||||||||||| ||||||||||| |    
T  45369227 aaattcaatgttacaaatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacat 45369128  T
Q  167 ccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagt 224  Q
    |||||||| |||||||||  ||| |  || |||||||||||||| || || |||||||    
T  45369127 ccaaacatctcaaaatcaaatctacacctctgaaatcaattttgtctccttcaaaagt 45369070  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 241
Target Start/End: Original strand, 29240468 - 29240646
Alignment:
Q  64 caataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatcaattttacttgaga 163  Q
    |||||||||| ||  ||||| | |||||||| ||| |||||||||||||||||||||  |||| ||| |  || | | | |||||||||| ||||||| |    
T  29240468 caataaattcgaggctaaaattcaattgtaggggcaaaaacttcaaattttagcttcaagttagaatcaactctggaggtaaaatcaattctacttgaaa 29240567  T
Q  164 a-ctccaaacatgtcaaaatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacact 241  Q
    |  ||| ||||||||||||||| || | |  || |  |||||||||||| | | ||||||||  ||||||| |||||||    
T  29240568 atatcctaacatgtcaaaatcaattttacacctctagaatcaattttgattcccccaaaagtggaaccaaacatacact 29240646  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 35108172 - 35108130
Alignment:
Q  199 aaatcaattttgacttctccaaaagttaaaccaaagatacact 241  Q
    |||||||||||||| |||| |||||| ||||||||||||||||    
T  35108172 aaatcaattttgacctctctaaaagtgaaaccaaagatacact 35108130  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 47596416 - 47596490
Alignment:
Q  168 caaacatgtcaa-aatcagttctccttctttgaaatcaattttgacttctccaaaagttaaaccaaagatacact 241  Q
    |||||||||||| ||||| ||||||  |||| ||||||||||||| | |||||||||| |||||| | |||||||    
T  47596416 caaacatgtcaacaatcaattctccacctttaaaatcaattttgattcctccaaaagtgaaaccatacatacact 47596490  T

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Target: scaffold0393 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 12401 - 12442
Alignment:
Q  142 gcaaaatcaattttacttgagaac-tccaaacatgtcaaaat 182  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  12401 gcaaaatcaattctacttgagaacatccaaacatgtcaaaat 12442  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 41517203 - 41517364
Alignment:
Q  50 aaaaatcggttgaacaataaattcaagattaaaaatgaattgtagaggcgaaaacttcaaattttagcttcctgttaaaatgagttcggaatgcaaaatc 149  Q
    |||||| | ||||||||||||||  |  ||||||||  ||||||||||| ||| |||  |||| |||||||   ||| ||| ||||| ||||||||||||    
T  41517203 aaaaatggtttgaacaataaatttgaagttaaaaattgattgtagaggcaaaagctttgaattctagcttcacattagaatcagttctgaatgcaaaatc 41517302  T
Q  150 aattttacttgagaac-tccaaacatgtcaaaatcagttctccttctttgaaatcaattttg 210  Q
    | || |||| |||||| ||  |  |||||||||||| |||| | |||||  |||||||||||    
T  41517303 agttctactagagaacatcagagaatgtcaaaatcaattctacatctttagaatcaattttg 41517364  T

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