View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5603_low_4 (Length: 364)
Name: NF5603_low_4
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5603_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 40567242 - 40566995
Alignment:
| Q |
20 |
tgttaatcgtctgattat--gaggaaagagattctgaaaattatttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttcct |
117 |
Q |
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| T |
40567242 |
tgttaatcgtctgattatacgaggaaagagattctgaaaattatttaactaaatcaaagaacatgttctctttatcatatttagaaagaacaatgttcct |
40567143 |
T |
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| Q |
118 |
tttcttatc-ttttctacaagctaagtgaaccctatttatnnnnnnntacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggtt |
216 |
Q |
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| T |
40567142 |
tttctcatctttttctacaagctaagtgaacccta------aagaaatacaacgatatgtgtcaataatatgatccaatgatatggccccattcaaggtt |
40567049 |
T |
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| Q |
217 |
catagcatataattttttctcatgggagacaattagagatgagaatcatacctt |
270 |
Q |
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| T |
40567048 |
catagcatagaattttttctcatgggagacaattagagatgagaatcatacctt |
40566995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 40567001 - 40566954
Alignment:
| Q |
308 |
atacctttgatgatcatttactcctttagttgattagcttagtataat |
355 |
Q |
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| T |
40567001 |
atacctttgatgatcatttactcctttagttgattagcttagtataat |
40566954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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