View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5603_low_7 (Length: 273)
Name: NF5603_low_7
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5603_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 34824397 - 34824152
Alignment:
| Q |
20 |
ctctcacacttcaaatcctcgccggtccacgcaacggcgaaacccaccaatttgaacccggatccaccatcaaaatcggtcgggtaatccgcggcaacaa |
119 |
Q |
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|||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||| || |||||||||||||| |
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| T |
34824397 |
ctcttacactccaaatcctcgccggtccacgcaacggagaaacccaccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaacaa |
34824298 |
T |
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| Q |
120 |
cctccccatcaaagatccaggtatttccaccaaacacctcactatccatttcgattccggtaattggattctcacagatctcgattcctcaaacggtacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
34824297 |
cctccccatcaaagatccaggtatttccaccaaacacctcactatccatttcgattccggtaattggattctcacagatctcgattcctctaacggcacc |
34824198 |
T |
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| Q |
220 |
gttttagacaacatacccgttcctccaaataccccttttcatctca |
265 |
Q |
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||||| |||||| ||| |||||||||||||| ||||||||||||| |
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| T |
34824197 |
gttttggacaacgaacctgttcctccaaatactccttttcatctca |
34824152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 28947034 - 28946790
Alignment:
| Q |
20 |
ctctcacacttcaaatcctcgccggtccacgcaacggcgaaacccaccaatttgaacccggatccaccatcaaaatcggtcgggtaatccgcggcaacaa |
119 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||| || |||||||||||||| |
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| T |
28947034 |
ctctcacactccaaatcctcgccggtccacgcaacggagaaacccaccaattcgaacctggatccaccgtcaaaatcggtcgtgtcatccgcggcaacaa |
28946935 |
T |
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| Q |
120 |
cctccccatcaaagatccaggtatttccaccaaacacctcactatccatttcgattccggtaattggattctcacagatctcgattcctcaaacggtacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
28946934 |
cctccccatcaaagatccaggtatttccaccaaacacctcactatccatttcgattccggtaattggattctcacagatctcgattcctctaacggcacc |
28946835 |
T |
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| Q |
220 |
gttttagacaacatacccgttcctccaaataccccttttcatctc |
264 |
Q |
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||||| |||||| ||| |||||||| ||||| |||||||||||| |
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| T |
28946834 |
gttttggacaacgaacctgttcctccgaatactccttttcatctc |
28946790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 49 - 266
Target Start/End: Original strand, 42231756 - 42231976
Alignment:
| Q |
49 |
cgcaacggcgaaacccaccaatttgaacccggatccaccatcaaaatcggtcgggtaatccgcggcaacaacctccccatcaaagatccaggtatttcca |
148 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
42231756 |
cgcaacggcgaaacccaccaattcgaacctggatccaccatcaaaatcggtcgggtcatacgcggcaacaacctccccatcaaagatccaggtatttcca |
42231855 |
T |
|
| Q |
149 |
ccaaacacctcactatccatttcgat---tccggtaattggattctcacagatctcgattcctcaaacggtaccgttttagacaacatacccgttcctcc |
245 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
42231856 |
ccaaacacctcactatccatttcgattcgtcctgtaattggattctcacatatctcgattcctcaaacggcaccgttttagataacaaacccgttcctcc |
42231955 |
T |
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| Q |
246 |
aaataccccttttcatctcac |
266 |
Q |
| |
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||||||||||||||||||||| |
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| T |
42231956 |
aaataccccttttcatctcac |
42231976 |
T |
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