View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5603_low_8 (Length: 263)
Name: NF5603_low_8
Description: NF5603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5603_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 43175387 - 43175134
Alignment:
| Q |
1 |
ctctagttcctgctttattcttgaataagcacccagcttgctcagttatgtaaaactgggaagaaagcaaacaaagtcattatcaaaattgaagaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43175387 |
ctctagttcctgctttattcttgaataagcacccagcttgctcagttatgtaaaactgggaagaaagcaaacaaagtcattatcaaaattgaagaaaaaa |
43175288 |
T |
|
| Q |
101 |
tatcgtttattgttgcagtatttacgtacgagtctaattttgatacacgttgagtgtagtcaaccaatttaccgatcataaattgtcaaatcattaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43175287 |
tatcgtttattgttgcagtatttacgtacgagtctaattttgatacacgttgagtgtagtcaaccaatttaccgatcataaattgtcaaatcattaaaaa |
43175188 |
T |
|
| Q |
201 |
taatgttaactttgatcccgattatcttaaaaaccacacttaagatgatgatgt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43175187 |
taatgttaactttgatcccgattatcttaaaaaccacacttaagatgatgatgt |
43175134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43221545 - 43221610
Alignment:
| Q |
1 |
ctctagttcctgctttattcttgaataagcacccagcttgctca-gttatgtaaaactgggaagaa |
65 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
43221545 |
ctctagttcctgctttattcttgaattagcacccagcttgatcaccttatgggaaactgggaagaa |
43221610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 43166397 - 43166365
Alignment:
| Q |
5 |
agttcctgctttattcttgaataagcacccagc |
37 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
43166397 |
agttcctgctttattcttgaattagcacccagc |
43166365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University