View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5604-Insertion-2 (Length: 947)

Name: NF5604-Insertion-2
Description: NF5604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5604-Insertion-2
NF5604-Insertion-2
[»] chr3 (60 HSPs)
chr3 (7-947)||(23467152-23468096)
chr3 (7-431)||(23400943-23401380)
chr3 (650-827)||(23427143-23427320)
chr3 (7-215)||(23382521-23382729)
chr3 (635-850)||(23400736-23400951)
chr3 (9-215)||(23453035-23453241)
chr3 (7-215)||(23350956-23351164)
chr3 (7-215)||(23471394-23471602)
chr3 (7-214)||(23477560-23477767)
chr3 (9-215)||(23462284-23462490)
chr3 (9-204)||(23438869-23439064)
chr3 (9-212)||(23403668-23403871)
chr3 (9-289)||(23446172-23446465)
chr3 (7-295)||(23497915-23498216)
chr3 (473-582)||(40845940-40846049)
chr3 (473-582)||(5391453-5391562)
chr3 (474-582)||(21853194-21853302)
chr3 (473-582)||(44994991-44995101)
chr3 (474-582)||(13856096-13856204)
chr3 (473-581)||(32352843-32352951)
chr3 (473-574)||(8950535-8950636)
chr3 (667-850)||(23452689-23452872)
chr3 (474-582)||(20382514-20382624)
chr3 (474-582)||(19649395-19649506)
chr3 (473-582)||(10839403-10839514)
chr3 (635-850)||(23470907-23471122)
chr3 (474-582)||(1781757-1781867)
chr3 (474-571)||(43347370-43347468)
chr3 (635-850)||(23438407-23438622)
chr3 (474-582)||(36539627-36539737)
chr3 (478-571)||(54546904-54546998)
chr3 (474-582)||(3178699-3178808)
chr3 (641-850)||(23350472-23350681)
chr3 (641-850)||(23461797-23462003)
chr3 (483-569)||(22845398-22845484)
chr3 (646-850)||(23403193-23403394)
chr3 (641-827)||(23382057-23382240)
chr3 (475-571)||(8926762-8926860)
chr3 (881-947)||(23427053-23427118)
chr3 (497-569)||(46685819-46685891)
chr3 (311-425)||(23462007-23462121)
chr3 (473-569)||(33103738-33103835)
chr3 (484-574)||(47889731-47889823)
chr3 (473-566)||(48206848-48206943)
chr3 (311-425)||(23382244-23382358)
chr3 (473-571)||(6280393-6280492)
chr3 (310-408)||(36001223-36001321)
chr3 (311-396)||(23350714-23350799)
chr3 (311-427)||(23471118-23471234)
chr3 (499-571)||(51336231-51336303)
chr3 (311-366)||(23438640-23438695)
chr3 (312-408)||(23403420-23403516)
chr3 (310-362)||(23446045-23446097)
chr3 (305-408)||(23477305-23477408)
chr3 (310-364)||(23434171-23434225)
chr3 (219-295)||(23477466-23477542)
chr3 (474-569)||(791812-791906)
chr3 (105-184)||(36001511-36001590)
chr3 (474-538)||(36826021-36826087)
chr3 (478-574)||(19644358-19644458)
[»] scaffold0201 (3 HSPs)
scaffold0201 (5-215)||(10429-10639)
scaffold0201 (641-850)||(9969-10175)
scaffold0201 (311-408)||(10196-10293)
[»] chr8 (18 HSPs)
chr8 (473-582)||(35806790-35806899)
chr8 (474-582)||(22324593-22324701)
chr8 (473-582)||(21525354-21525463)
chr8 (473-582)||(26021391-26021501)
chr8 (473-574)||(33934400-33934501)
chr8 (477-582)||(42013872-42013977)
chr8 (473-582)||(42072424-42072533)
chr8 (495-581)||(24065291-24065377)
chr8 (473-573)||(19334778-19334879)
chr8 (495-571)||(21488084-21488160)
chr8 (477-582)||(16818996-16819105)
chr8 (474-569)||(10112042-10112139)
chr8 (529-582)||(16523158-16523211)
chr8 (495-571)||(43282885-43282962)
chr8 (473-571)||(2271196-2271289)
chr8 (495-563)||(34697431-34697500)
chr8 (531-582)||(16591398-16591449)
chr8 (602-635)||(42014019-42014052)
[»] chr7 (18 HSPs)
chr7 (473-582)||(44164766-44164875)
chr7 (474-582)||(34707113-34707221)
chr7 (473-582)||(10576669-10576778)
chr7 (473-570)||(24320474-24320571)
chr7 (473-574)||(29555970-29556071)
chr7 (473-574)||(32876561-32876662)
chr7 (485-582)||(34259526-34259623)
chr7 (473-582)||(29238166-29238275)
chr7 (492-582)||(29981136-29981226)
chr7 (474-582)||(33057680-33057789)
chr7 (474-574)||(19334591-19334693)
chr7 (474-574)||(17303145-17303248)
chr7 (474-571)||(10334173-10334272)
chr7 (500-571)||(9770682-9770753)
chr7 (474-580)||(26284404-26284510)
chr7 (521-571)||(15017817-15017867)
chr7 (592-634)||(24320400-24320442)
chr7 (474-569)||(41853128-41853226)
[»] chr6 (15 HSPs)
chr6 (474-582)||(9231877-9231985)
chr6 (441-582)||(14309821-14309962)
chr6 (473-582)||(24694674-24694783)
chr6 (473-582)||(13627536-13627645)
chr6 (503-582)||(1727956-1728035)
chr6 (473-582)||(27863694-27863804)
chr6 (495-571)||(34103703-34103779)
chr6 (474-571)||(28750684-28750783)
chr6 (479-571)||(13103152-13103246)
chr6 (473-526)||(11084606-11084659)
chr6 (495-571)||(11212689-11212765)
chr6 (474-571)||(11279536-11279634)
chr6 (533-571)||(24497608-24497646)
chr6 (529-569)||(8412717-8412757)
chr6 (477-538)||(24500767-24500830)
[»] chr5 (29 HSPs)
chr5 (473-582)||(23218481-23218590)
chr5 (473-582)||(37169056-37169165)
chr5 (474-582)||(38397595-38397703)
chr5 (473-582)||(6257433-6257542)
chr5 (431-574)||(39862518-39862660)
chr5 (474-582)||(16618593-16618701)
chr5 (477-581)||(15631613-15631718)
chr5 (474-582)||(10081140-10081250)
chr5 (474-582)||(8456986-8457096)
chr5 (473-571)||(36769108-36769207)
chr5 (495-580)||(9738008-9738094)
chr5 (474-582)||(11856290-11856400)
chr5 (474-582)||(25560350-25560460)
chr5 (477-571)||(614426-614522)
chr5 (495-571)||(6174762-6174840)
chr5 (474-571)||(42119617-42119716)
chr5 (498-571)||(33271304-33271377)
chr5 (473-571)||(27916133-27916234)
chr5 (497-582)||(29491437-29491521)
chr5 (495-573)||(29790251-29790328)
chr5 (503-568)||(10115185-10115251)
chr5 (495-563)||(3341162-3341230)
chr5 (521-569)||(19322058-19322106)
chr5 (602-634)||(23218632-23218664)
chr5 (496-544)||(33188403-33188451)
chr5 (500-582)||(10052523-10052606)
chr5 (602-636)||(16618517-16618551)
chr5 (474-547)||(22903252-22903329)
chr5 (602-635)||(37168981-37169014)
[»] chr4 (31 HSPs)
chr4 (473-582)||(1535767-1535876)
chr4 (473-582)||(49284353-49284462)
chr4 (473-574)||(25954746-25954847)
chr4 (477-574)||(34240993-34241090)
chr4 (473-582)||(52632514-52632623)
chr4 (473-582)||(37801287-37801396)
chr4 (477-582)||(46583564-46583669)
chr4 (473-582)||(36012208-36012317)
chr4 (473-574)||(35018932-35019033)
chr4 (474-574)||(17888581-17888683)
chr4 (474-540)||(16338309-16338375)
chr4 (474-582)||(31377385-31377495)
chr4 (474-570)||(322584-322682)
chr4 (500-574)||(16338244-16338318)
chr4 (474-582)||(54090176-54090285)
chr4 (495-582)||(20818584-20818672)
chr4 (473-582)||(12792254-12792365)
chr4 (479-571)||(9742567-9742661)
chr4 (504-582)||(10094416-10094495)
chr4 (474-582)||(11054448-11054561)
chr4 (473-569)||(50328790-50328888)
chr4 (474-581)||(35322728-35322837)
chr4 (473-571)||(46473988-46474088)
chr4 (521-582)||(47084056-47084117)
chr4 (48-184)||(12897866-12898002)
chr4 (310-361)||(12898192-12898243)
chr4 (592-635)||(34241118-34241161)
chr4 (495-571)||(19124772-19124849)
chr4 (521-569)||(5780790-5780838)
chr4 (592-631)||(25954875-25954914)
chr4 (602-635)||(16338161-16338194)
[»] chr2 (20 HSPs)
chr2 (473-582)||(14186461-14186570)
chr2 (473-582)||(14942067-14942176)
chr2 (473-582)||(42769781-42769890)
chr2 (474-582)||(29846439-29846547)
chr2 (473-574)||(19181544-19181645)
chr2 (473-582)||(40277311-40277420)
chr2 (473-581)||(1387312-1387421)
chr2 (473-569)||(3597903-3597999)
chr2 (474-582)||(6318481-6318592)
chr2 (474-582)||(3956567-3956677)
chr2 (473-582)||(41674729-41674841)
chr2 (498-569)||(43139766-43139839)
chr2 (473-571)||(14539738-14539838)
chr2 (473-581)||(33009666-33009777)
chr2 (474-571)||(40780050-40780150)
chr2 (474-571)||(28321737-28321836)
chr2 (474-569)||(23685406-23685503)
chr2 (495-582)||(2888058-2888146)
chr2 (498-569)||(25665244-25665316)
chr2 (474-556)||(32486239-32486323)
[»] chr1 (26 HSPs)
chr1 (473-582)||(3346782-3346891)
chr1 (473-582)||(7742802-7742911)
chr1 (473-582)||(49902464-49902573)
chr1 (473-582)||(29149571-29149680)
chr1 (473-582)||(48392429-48392538)
chr1 (477-582)||(5974988-5975093)
chr1 (473-582)||(42517317-42517430)
chr1 (473-574)||(10156047-10156148)
chr1 (473-582)||(47022698-47022807)
chr1 (474-574)||(23908282-23908382)
chr1 (477-574)||(38859849-38859948)
chr1 (474-571)||(10907682-10907781)
chr1 (502-570)||(5558334-5558402)
chr1 (473-573)||(26835332-26835434)
chr1 (495-582)||(30745361-30745449)
chr1 (495-582)||(30766812-30766900)
chr1 (474-574)||(42456566-42456669)
chr1 (495-563)||(30252787-30252856)
chr1 (534-582)||(37189697-37189745)
chr1 (473-563)||(44107430-44107522)
chr1 (495-571)||(45968685-45968761)
chr1 (474-571)||(14796871-14796970)
chr1 (474-571)||(14805745-14805844)
chr1 (495-569)||(13131914-13131988)
chr1 (499-571)||(26511667-26511739)
chr1 (496-538)||(8430508-8430551)
[»] scaffold0079 (3 HSPs)
scaffold0079 (474-540)||(54485-54551)
scaffold0079 (500-574)||(54542-54616)
scaffold0079 (602-635)||(54666-54699)
[»] scaffold0045 (1 HSPs)
scaffold0045 (495-582)||(34475-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (521-571)||(20865-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (524-569)||(85547-85592)


Alignment Details
Target: chr3 (Bit Score: 813; Significance: 0; HSPs: 60)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 7 - 947
Target Start/End: Complemental strand, 23468096 - 23467152
Alignment:
Q  7 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  23468096 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatcctcgatggtatatagtctttaaaacggctaaaattgaaagagtgttg 23467997  T
Q  107 caacttagatgttctccccgacaatatccaaaaccattcaatgctgg-aatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23467996 caacttagatgttctccccgacaatatccaaaaccattcaatgttgggaatggcttgatttagatgattgcaggaaaattgtgtctctaacagagcttcc 23467897  T
Q  206 accatccctgccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcat 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467896 accatccctgccgttaattgcagttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagactccattgcat 23467797  T
Q  306 gcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtggg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  23467796 gcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttccatcattctttctgaggg 23467697  T
Q  406 ctttaatgtttaccaccatgccgttc---ggcgaagccaggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataag 502  Q
    ||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  23467696 ctttaatgtttaccaccatgccgttcagtggcggagccaggaatattgtaaagcctgggcggaaaatttttttgcaacacatttatagggcgtacataag 23467597  T
Q  503 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacnnnnnnnnnttggcccggag 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         |||||||||||    
T  23467596 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaatttggcccggag 23467497  T
Q  603 cccgggatcgccgggccttagaaccgcccctgatgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttat 702  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467496 ccgggggtcgccgggccttagaaccgcccctgatgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttat 23467397  T
Q  703 cttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttc 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23467396 cttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtgaaatttatgatttttgcaacttatcatttcaatttc 23467297  T
Q  803 tacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataagtgtgttgtatctttaggaatttaattaatcaatgaaaacacatgttttaat 902  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  23467296 tacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataagtgtgttgtatctttaggaatgtaattaatcaatgaaaacatatgttttaat 23467197  T
Q  903 tttgtagctagtttcttttcatcttctccttcttagtcttagagc 947  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23467196 tttgtagctagtttcttttcatcttctccttcttagtcttagagc 23467152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 23401380 - 23400943
Alignment:
Q  7 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttg 106  Q
    ||||||||||||| | ||||||||||||| || ||||||  |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  23401380 aactagacctttctgagtgcacagaaatcaatacattaaaactgtggtccatccttgatggcatacagtctttaaaaggactaaaattgaaagagtgttg 23401281  T
Q  107 caacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttcca 206  Q
    ||||||| | |||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401280 caacttataagttctccctgacaacatccaaaaccattcaatgctagaatgacttgatttagatgattgcaggaaacttgtgtctctaacagagcttcca 23401181  T
Q  207 ccatccctg-------------ccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaag 293  Q
    |||||||||             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401180 ccatccctgttatatttgagagccgttaattgcacttatatggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaag 23401081  T
Q  294 actccattgcatgcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcat 393  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23401080 actccattgcatgcatctttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgattggtgcagttttatattttgcatcat 23400981  T
Q  394 tctttctgtgggctttaatgtttaccaccatgccgttc 431  Q
    |||||||| |||||||||||||||||||||||||||||    
T  23400980 tctttctgagggctttaatgtttaccaccatgccgttc 23400943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 650 - 827
Target Start/End: Complemental strand, 23427320 - 23427143
Alignment:
Q  650 ttatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttca 749  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23427320 ttatttttgaaaacggaaaagaagccgacagacgttgtagtagtgacagttatcttgggacattcatttctgatcatgtactggtatgctggcatgttca 23427221  T
Q  750 caacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 827  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23427220 caacagacaatatagtgaaagttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 23427143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 23382729 - 23382521
Alignment:
Q  7 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttg 106  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||      
T  23382729 aactagacctttcagggtgcacagaaatcaatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaatgagtgtgt 23382630  T
Q  107 caacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttcca 206  Q
    |||||||||   |||||| || || || | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||     
T  23382629 caacttagaatgtctcccagagaacatgcgaaaccattcaatgctagaatggcttgaattggatgattgcaggaaacttgtgtctctgacagagcttccg 23382530  T
Q  207 ccatccctg 215  Q
    |||||||||    
T  23382529 ccatccctg 23382521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 635 - 850
Target Start/End: Complemental strand, 23400951 - 23400736
Alignment:
Q  635 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 734  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||| |||| |||||||||||||||||||||||| ||||||| ||||| ||||| ||||    
T  23400951 atgccgttcactgtattatctttgaaaatggctaagaagctgacagacgtcgtattagtgacagttatcttgggatattcattactgatcatgtattggt 23400852  T
Q  735 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 834  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||     
T  23400851 atgctagcatgttcacaacagacaagatagtggaagttatgatttttgcaacttatcatttcagtttctacttcaaggtcacaagaaactattgcggtgg 23400752  T
Q  835 tcaacagaggggataa 850  Q
    ||||| ||||||||||    
T  23400751 tcaacggaggggataa 23400736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 23453241 - 23453035
Alignment:
Q  9 ctagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgca 108  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||| |||||| ||||| ||||    
T  23453241 ctagacctttcagggtgcacagaaatcaatgcattaagtctttggtccatccttgatggcatacaatctttaaaacagctaatattgaatgagtgctgca 23453142  T
Q  109 acttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccacc 208  Q
    |||||||   ||||||||| |||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  23453141 acttagaaagtctccccgagaatatccaaaaccattcaatcctaaaatggcttgatttagatgattgcaggaaacttgtgtctctagcagagcttccagc 23453042  T
Q  209 atccctg 215  Q
    |||||||    
T  23453041 atccctg 23453035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 23351164 - 23350956
Alignment:
Q  7 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttg 106  Q
    |||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  23351164 aactagacctctctgggtgcacagaaatcaatgcactaagtctgtggtccatccttgatggcatacagtctttaaaacgactaaaattgaaagagtgttg 23351065  T
Q  107 caacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttcca 206  Q
    |||||||||   |||||| || ||||||| |||||||||||||||  || |||||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  23351064 caacttagaatgtctccctgagaatatccgaaaccattcaatgctaaaacggcttgatttagatgattgcaggaaactagtgtccctagcagagcttcca 23350965  T
Q  207 ccatccctg 215  Q
    |||||||||    
T  23350964 ccatccctg 23350956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 23471602 - 23471394
Alignment:
Q  7 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttg 106  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  23471602 aactagacctttcagggtgcacagaaattaatgcattaagtttgtggtccatccttgatggcatacaatctttaaaacagctaaaattgaaagagtgttg 23471503  T
Q  107 caacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttcca 206  Q
    |||||||||   |||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||| |||| | |||||||||     
T  23471502 caacttagaaagtctcccagagaatatccaaaaccattcaatgctagaatggcttgaattagatgattgcaggaacctcgtgactctgatagagcttccg 23471403  T
Q  207 ccatccctg 215  Q
    |||||||||    
T  23471402 ccatccctg 23471394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 23477767 - 23477560
Alignment:
Q  7 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttg 106  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||  ||||||||||    
T  23477767 aactagacctttcagggtgcacagaaatgaatgcattaagtctgtggtccatccttgatggcatacaatctttaaaagggctaacattacaagagtgttg 23477668  T
Q  107 caacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttcca 206  Q
    |||||| ||   |||||| || ||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| |||||     
T  23477667 caacttggaatgtctccctgagaatatccgaaaccattcaatgctaaaatggcttgatttagatggttgcaggaaacttgtgtctctaacagaacttccg 23477568  T
Q  207 ccatccct 214  Q
     |||||||    
T  23477567 tcatccct 23477560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 23462490 - 23462284
Alignment:
Q  9 ctagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgca 108  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  23462490 ctagacctttctgggtgcacagaaatcaatgcaataagtctgtcgtccatccttgatggcatacaatctttaaaacggctaaaattgaatgagtgttgca 23462391  T
Q  109 acttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccacc 208  Q
    |||||||   ||||||  | || || ||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||||| |||| ||    
T  23462390 acttagaatgtctccctaagaacatacaaaaccattcaatgctagaatggcttgaattagacaattgcaggaaacttgtgtctctaacagagattccgcc 23462291  T
Q  209 atccctg 215  Q
    |||||||    
T  23462290 atccctg 23462284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 23439064 - 23438869
Alignment:
Q  9 ctagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgca 108  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  23439064 ctagacctttcagggtgcacagaaatcaatgcattaagtctatggtccatacttgatggtatacgatctttaaaacggctaaaattgaatgagtgttgca 23438965  T
Q  109 acttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttc 204  Q
    |||||||   |||||| || || || |||||||||  |||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  23438964 acttagaatgtctccctgagaacatacaaaaccatataatgctagaatggcttgaattagacgattgcaggaaacttgtgtctctgacagagcttc 23438869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 23403871 - 23403668
Alignment:
Q  9 ctagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgca 108  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||  ||    
T  23403871 ctagacctttcagggtgcacagaaatcaatgcatcaagtctgtggtccatacttgatggtatacagtctttaaaacggctaaaattgaatgagtgtgtca 23403772  T
Q  109 acttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccacc 208  Q
    |||||||   |||||| || || ||   ||| |||||| |||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||    
T  23403771 acttagagtgtctcccagagaacatgggaaagcattcattgcttgaatggcttgaattggatgattgcaggaaacttgtgtctctgacagagcttccgcc 23403672  T
Q  209 atcc 212  Q
    ||||    
T  23403671 atcc 23403668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 23446465 - 23446172
Alignment:
Q  9 ctagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgca 108  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||   |||| | ||||||||||    
T  23446465 ctagaccttttagggtgcacagaaatcaatgcattaagtctgtggtctatccttgatggcatacagtctttaaaatggctctcattgcatgagtgttgca 23446366  T
Q  109 acttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttccacc 208  Q
    || | ||   ||||||||| || || |||||||||||||||||  || | || | |||||||||||||||||||||||||||| ||||||||||||| ||    
T  23446365 acatggaatgtctccccgagaacatacaaaaccattcaatgctaaaaagtctagctttagatgattgcaggaaacttgtgtctgtaacagagcttccgcc 23446266  T
Q  209 atccc-------------tgccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctct 289  Q
    |||||             |||| ||||||||||||||||||||||| |||||| ||||| ||||||| || | |||||| |||||| |||||||    
T  23446265 atccctattatctttgagtgccattaattgcacttatctggacacagactccactcaacggtcatttcttgagaacatggtacaaatcttctct 23446172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 23498216 - 23497915
Alignment:
Q  7 aactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttg 106  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||   |||| |||| |||||    
T  23498216 aactaaacctttcacggtgcacagaaatcaatgcattaagtctgtggtccatccttgatggcatacaatctttgaaacggctctcattgcaagattgttg 23498117  T
Q  107 caacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttcca 206  Q
    |||||| ||   | |||| || || || | |||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  23498116 caacttggaatgtgtccctgagaacatacgaaaccattcaatgctaaaatggctagttttagatgattgcaggaaacttgtgtctctaacagagcttccg 23498017  T
Q  207 ccatccc-------------tgccgttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaag 293  Q
    |||||||             |||| ||||||||||||||||||||||| |||||| ||||| ||||||| || | |||||  |||||| ||||||| |||    
T  23498016 ccatccctattatgtttgagtgccattaattgcacttatctggacacagactccactcaacggtcatttcttgagaacatagtacaaatcttctctaaag 23497917  T
Q  294 ac 295  Q
    ||    
T  23497916 ac 23497915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 40846049 - 40845940
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846049 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 40845950  T
Q  573 agagatttac 582  Q
    || |||||||    
T  40845949 agggatttac 40845940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 5391453 - 5391562
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5391453 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 5391552  T
Q  573 agagatttac 582  Q
    || |||||||    
T  5391553 agggatttac 5391562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 21853194 - 21853302
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcata 21853293  T
Q  574 gagatttac 582  Q
    | |||||||    
T  21853294 gggatttac 21853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 44995101 - 44994991
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttat-aggggtttatataagaaattca 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44995101 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattca 44995002  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  44995001 tagggatttac 44994991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 13856096 - 13856204
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  13856096 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcata 13856195  T
Q  574 gagatttac 582  Q
    | |||||||    
T  13856196 gggatttac 13856204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 473 - 581
Target Start/End: Original strand, 32352843 - 32352951
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32352843 tttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcat 32352942  T
Q  573 agagattta 581  Q
    || ||||||    
T  32352943 agggattta 32352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 473 - 574
Target Start/End: Complemental strand, 8950636 - 8950535
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8950636 tttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 8950537  T
Q  573 ag 574  Q
    ||    
T  8950536 ag 8950535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 667 - 850
Target Start/End: Complemental strand, 23452872 - 23452689
Alignment:
Q  667 aaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatgttcacaacagacaagatagtg 766  Q
    ||||||| ||||| | || ||||||||  ||  |||||||||||||| ||||| ||| ||||| || |||||||| ||| | |||||| |||||| | ||    
T  23452872 aaagaagtcgacagatgtcgtattagttgcaaatatcttgggacattaatttcagatcatgtattgatatgctggaatggttacaacaaacaagaaactg 23452773  T
Q  767 aaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggggataa 850  Q
     || | |||| ||||||||| |||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  23452772 gaagtcatgacttttgcaacctatcatttcagttcctacttcaaggtcaaaaggaacaattgtggtggtcaacagaggggataa 23452689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 20382514 - 20382624
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattca 20382613  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  20382614 tagggatttac 20382624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 19649506 - 19649395
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattc 19649407  T
Q  571 atagagatttac 582  Q
    |||| |||||||    
T  19649406 atagcgatttac 19649395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 10839514 - 10839403
Alignment:
Q  473 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    |||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  10839514 tttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattc 10839415  T
Q  571 atagagatttac 582  Q
    | ||| ||||||    
T  10839414 agagaaatttac 10839403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 635 - 850
Target Start/End: Complemental strand, 23471122 - 23470907
Alignment:
Q  635 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 734  Q
    ||||| |||| |||||||| ||||||  ||||||||||| | ||| |||| | |||||| ||| |||| |||||||||| ||||| ||| ||| | || |    
T  23471122 atgcccttcattgtattatttttgaacgcggaaaagaagtcaacagacgtcgcattagtcacaattattttgggacattaatttcagatcatgcattgat 23471023  T
Q  735 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 834  Q
    ||| ||||||| | ||||||||||||| | || || ||||||| ||||||||||||||||||||||  |||||||||||| ||| ||| ||||  ||||     
T  23471022 atgttggcatggttacaacagacaagaaaatggaagttatgatatttgcaacttatcatttcaattcatacttcaaggtcccaatgaagaattacggtgg 23470923  T
Q  835 tcaacagaggggataa 850  Q
    ||||  ||||||||||    
T  23470922 tcaaaggaggggataa 23470907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 1781757 - 1781867
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattca 1781856  T
Q  572 tagagatttac 582  Q
     || |||||||    
T  1781857 gagggatttac 1781867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 474 - 571
Target Start/End: Complemental strand, 43347468 - 43347370
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattca 43347370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 635 - 850
Target Start/End: Complemental strand, 23438622 - 23438407
Alignment:
Q  635 atgccgttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggt 734  Q
    ||||| |||| ||||| ||||| |||  ||||||||||| ||||| |  | |||||||| ||| |||||| |||||||| ||||| ||| ||||| || |    
T  23438622 atgcccttcattgtatcatcttggaatgcggaaaagaagtcgacagatctcgtattagtcacaattatctcgggacattaatttcagatcatgtattgat 23438523  T
Q  735 atgctggcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgt 834  Q
    ||||||||||| | ||||||||||||| | || || | ||||| ||| ||||||||||||||||||  ||| ||||| || ||| ||| ||||||||||     
T  23438522 atgctggcatggttacaacagacaagaaaatggaagtaatgatatttacaacttatcatttcaattcatacatcaagatcccaatgaagaattgtggtgg 23438423  T
Q  835 tcaacagaggggataa 850  Q
    ||||  ||||||||||    
T  23438422 tcaaaggaggggataa 23438407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 36539627 - 36539737
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |    
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattta 36539726  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  36539727 tagggatttac 36539737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 478 - 571
Target Start/End: Original strand, 54546904 - 54546998
Alignment:
Q  478 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattca 54546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 3178699 - 3178808
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||| | ||||||||||||||||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcat 3178798  T
Q  573 agagatttac 582  Q
    || |||||||    
T  3178799 agggatttac 3178808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 641 - 850
Target Start/End: Complemental strand, 23350681 - 23350472
Alignment:
Q  641 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 740  Q
    |||| ||| ||||||||||| | || ||||||| ||||| | || ||||||||  || |||||||||| |||| ||||  ||| | ||| || |||| ||    
T  23350681 ttcattgtgttatctttgaacatggcaaagaagtcgacagatgtcgtattagttgcaattatcttggggcattaattttagatcacgtattgatatgttg 23350582  T
Q  741 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 840  Q
    ||||  | ||| ||  ||||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| || ||     
T  23350581 gcatcgttacagcattcaagaaagtggaagttatgacttttgcaacctatcatttcaatttatacttcaaggtcacaaggaaaaattgtggtggtcgact 23350482  T
Q  841 gaggggataa 850  Q
    ||||||||||    
T  23350481 gaggggataa 23350472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 641 - 850
Target Start/End: Complemental strand, 23462003 - 23461797
Alignment:
Q  641 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 740  Q
    |||| |||||||||||||||  ||||||||||| ||||| |||| | |||||   || |||||| |||||||| ||||| ||| ||||| || |  | ||    
T  23462003 ttcattgtattatctttgaatgcggaaaagaagtcgacagacgtcgcattagattcaattatctcgggacattaatttcagatcatgtattgatgcgttg 23461904  T
Q  741 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 840  Q
    ||||| | |||||| |||||| |||| || |||||||| |   |||||||||||| ||||  |||||||||||| ||| ||| |||||||||| ||||||    
T  23461903 gcatggttacaacatacaagaaagtggaagttatgattgt---aacttatcatttaaattcatacttcaaggtcccaatgaagaattgtggtggtcaaca 23461807  T
Q  841 gaggggataa 850  Q
    ||||||||||    
T  23461806 gaggggataa 23461797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 483 - 569
Target Start/End: Complemental strand, 22845484 - 22845398
Alignment:
Q  483 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatt 22845398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 646 - 850
Target Start/End: Complemental strand, 23403394 - 23403193
Alignment:
Q  646 tgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctggcatg 745  Q
    ||||| |||||||||   |||||||||| ||||| |||| | ||||||  || |||||| |||||||| ||||| ||| ||||| || | || |||||||    
T  23403394 tgtatcatctttgaatgtggaaaagaagtcgacagacgtcgcattagtctcaattatctcgggacattaatttcagatcatgtattgatgtgttggcatg 23403295  T
Q  746 ttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaacagaggg 845  Q
     | |||||| |||||| |||| || |||||||| |   |||||||||||||||||  |||||||||||| ||| ||| || ||||||| |||||||||||    
T  23403294 gttacaacatacaagaaagtggaagttatgattgt---aacttatcatttcaattcatacttcaaggtcccaatgaagaactgtggtggtcaacagaggg 23403198  T
Q  846 gataa 850  Q
    |||||    
T  23403197 gataa 23403193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 641 - 827
Target Start/End: Complemental strand, 23382240 - 23382057
Alignment:
Q  641 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 740  Q
    |||| |||||||||||||||  ||||||||||| ||||| |||| | ||||||  || |||||| |||||||| ||||| ||| ||||| || |||| ||    
T  23382240 ttcattgtattatctttgaatgcggaaaagaagtcgacagacgtcgcattagtctcaattatctcgggacattaatttcagatcatgtattgatatggtg 23382141  T
Q  741 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaatt 827  Q
    ||||| | |||||| |||||| |||| || ||||||   ||| |||||||||||||||||  |||||||||||| ||| ||| ||||    
T  23382140 gcatggttacaacatacaagaaagtggaagttatga---ttgtaacttatcatttcaattcatacttcaaggtcccaatgaagaatt 23382057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 475 - 571
Target Start/End: Original strand, 8926762 - 8926860
Alignment:
Q  475 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||||| |||||||||    
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattca 8926860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 881 - 947
Target Start/End: Complemental strand, 23427118 - 23427053
Alignment:
Q  881 caatgaaaacacatgttttaattttgtagctagtttcttttcatcttctccttcttagtcttagagc 947  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  23427118 caatgaaaacacatgttttaattttgtagctag-ttcctttcatcttctccttcttagtcttagagc 23427053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 497 - 569
Target Start/End: Complemental strand, 46685891 - 46685819
Alignment:
Q  497 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatt 46685819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 311 - 425
Target Start/End: Complemental strand, 23462121 - 23462007
Alignment:
Q  311 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 410  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || |||||| |||||| |    
T  23462121 tttgattttcagacaatcaaggcttcaataactattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctgagggcttca 23462022  T
Q  411 atgtttaccaccatg 425  Q
     |||| |||||||||    
T  23462021 ctgttaaccaccatg 23462007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 473 - 569
Target Start/End: Original strand, 33103738 - 33103835
Alignment:
Q  473 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||  |||||||||||||  ||||||||||||||    
T  33103738 tttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaatt 33103835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 484 - 574
Target Start/End: Original strand, 47889731 - 47889823
Alignment:
Q  484 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 574  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatataagaaattcatag 47889823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 473 - 566
Target Start/End: Original strand, 48206848 - 48206943
Alignment:
Q  473 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaa 566  Q
    ||||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| |||||| | ||||||||||||||||||||||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataagaa 48206943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 311 - 425
Target Start/End: Complemental strand, 23382358 - 23382244
Alignment:
Q  311 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 410  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| | |||||||| |||||  |||| |||||||||||| || |||||| |||||| |    
T  23382358 tttgattttcagacaatcaaggcttcaataagtattcttcctattgctaaatctgacttgtgtggtttcatattttgcatccttttttctgagggcttca 23382259  T
Q  411 atgtttaccaccatg 425  Q
     |||| || ||||||    
T  23382258 ctgttaacaaccatg 23382244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 473 - 571
Target Start/End: Complemental strand, 6280492 - 6280393
Alignment:
Q  473 tttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||  ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  6280492 tttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 6280393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 310 - 408
Target Start/End: Complemental strand, 36001321 - 36001223
Alignment:
Q  310 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 408  Q
    |||| |||||||  ||| |||||| || ||| |||||||||||||||||||||||||||||||  |||| || |||||||||||| | |||| ||||||    
T  36001321 gttttattttcaatcaacagaggcctcgatagttattcctcctattccaaaatctgatttgtgttgtttaattttttgcatcattttctctgagggctt 36001223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 23350799 - 23350714
Alignment:
Q  311 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattct 396  Q
    ||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| | |||||  |||| ||||| |||||| ||||    
T  23350799 tttgattttaagacagtagaggcttcaataagtattcctccaattccaaaatcttacttgtgtggtttcatattctgcatcgttct 23350714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 311 - 427
Target Start/End: Complemental strand, 23471234 - 23471118
Alignment:
Q  311 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggcttta 410  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||  ||||||||  || ||  |||| |||||| ||||| || |||||| |||||| |    
T  23471234 tttgattttcagacaatcgaggcttcaataactattcttcctattaaaaaatctgtcttatgtggtttcatatttcgcatccttttttctgagggcttca 23471135  T
Q  411 atgtttaccaccatgcc 427  Q
     | || |||||||||||    
T  23471134 ctattaaccaccatgcc 23471118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 499 - 571
Target Start/End: Original strand, 51336231 - 51336303
Alignment:
Q  499 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||| |||||||||||||| ||||||||||| | ||||||||  | ||||||||| |||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattca 51336303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 23438695 - 23438640
Alignment:
Q  311 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctga 366  Q
    ||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||    
T  23438695 tttgattttcagacaactgaggcttcaataactattcttcctattccaaaatctga 23438640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 23403516 - 23403420
Alignment:
Q  312 ttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 408  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||||| | |||||||  ||| |  |||| |||||||||||| || |||||| ||||||    
T  23403516 ttgatttgcagacaatcgaggcttcaataactattcttcctattactaaatctgtcttgcgtggtttcatattttgcatccttttttctgagggctt 23403420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 23446097 - 23446045
Alignment:
Q  310 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaat 362  Q
    |||||||||||| |||||| ||||||||||||  |||||||||||||||||||    
T  23446097 gtttgattttcaaacaataaaggcttcaataaccattcctcctattccaaaat 23446045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 23477408 - 23477305
Alignment:
Q  305 tgcatgtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgg 404  Q
    |||| |||||||||||| |||||  ||||||||||||  ||||||||||||||||||| | |  |||   |||| ||||| |||| ||||||||||| ||    
T  23477408 tgcaagtttgattttcaaacaatgaaggcttcaataaccattcctcctattccaaaatataacctgtctggtttcatattctgcaccattctttctgagg 23477309  T
Q  405 gctt 408  Q
    ||||    
T  23477308 gctt 23477305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 23434225 - 23434171
Alignment:
Q  310 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaatct 364  Q
    |||||||||||| |||| | ||||||||||||  |||||||||||||||||||||    
T  23434225 gtttgattttcaaacaacaaaggcttcaataaccattcctcctattccaaaatct 23434171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 23477542 - 23477466
Alignment:
Q  219 ttaattgcacttatctggacacatactccattcaaccgtcattttttaataacatgttacaaaccttctctgaagac 295  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||||| || | |||||| ||||||  |||||| |||||    
T  23477542 ttaattgcacttatctggatacagactccactcaacggtcatttcttgagaacatggtacaaattttctctaaagac 23477466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 569
Target Start/End: Original strand, 791812 - 791906
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||||||| ||||| |  ||||||||||||| |||   |||||| ||||||| |||||||||| | |||||||||||  |||||||||||||||    
T  791812 ttgcaacacattaataggtgtttacataagaaattacaa---aataatcaaaaaatataaagaaattacgcaatttataggaatttatataagaaatt 791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 36001590 - 36001511
Alignment:
Q  105 tgcaacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaact 184  Q
    |||||||||||   |||||| ||||| |||||||||  ||||||| |||||||||||  ||||||||| ||| |||||||    
T  36001590 tgcaacttagaaagtctccctgacaacatccaaaacatttcaatgttggaatggctttgtttagatgaatgccggaaact 36001511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 474 - 538
Target Start/End: Complemental strand, 36826087 - 36826021
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaat-aataaaaaatgtaaagaaatt 538  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| | |||||||| ||||||||||    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt 36826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 574
Target Start/End: Complemental strand, 19644458 - 19644358
Alignment:
Q  478 aacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||  | |||||||||||||||| ||||||||  ||||||| | ||| ||||||  |||||||||  | ||||||||| |||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataatccaaaaaatctaaaaaaaattgttcaatttataaagatttatataaaaaattcata 19644359  T
Q  574 g 574  Q
    |    
T  19644358 g 19644358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 123; Significance: 1e-62; HSPs: 3)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 10639 - 10429
Alignment:
Q  5 acaactagacctttcagggtgcacagaaatcgatgcattaagtctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgt 104  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||   ||||    
T  10639 acaactagacctttcagggtgtacagaaatcaatgcattaagtctgtggtccatccttgatggcatacattctttaaaacggctaacattgaataggtgt 10540  T
Q  105 tgcaacttagatgttctccccgacaatatccaaaaccattcaatgctggaatggcttgatttagatgattgcaggaaacttgtgtctctaacagagcttc 204  Q
    |||||||||||   |||||| |  || || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||  |||    
T  10539 tgcaacttagaatgtctccctgtgaacatacaaaaccattcaatgcttgaatggcttgaattagatgattgcaggaaacttgtgtctgtaacagacattc 10440  T
Q  205 caccatccctg 215  Q
    | |||||||||    
T  10439 cgccatccctg 10429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 641 - 850
Target Start/End: Complemental strand, 10175 - 9969
Alignment:
Q  641 ttcactgtattatctttgaaaacggaaaagaagccgacatacgttgtattagtgacagttatcttgggacattcatttctgattatgtactggtatgctg 740  Q
    |||| |||||||||||||||  ||||||||||| ||||| ||   | |||||| ||| ||||| ||||||||| ||||| ||| ||||| || |||||||    
T  10175 ttcattgtattatctttgaacgcggaaaagaagtcgacagacagcgcattagtcacaattatcatgggacattaatttcagatcatgtattgatatgctg 10076  T
Q  741 gcatgttcacaacagacaagatagtgaaacttatgatttttgcaacttatcatttcaatttctacttcaaggtcacaaggaacaattgtggtgttcaaca 840  Q
    ||||| | |||| |||||||| | || || |||||||| |   |||||||||||| ||||  |||||||||||| ||| ||| |||||||||| ||||||    
T  10075 gcatggttacaatagacaagaaaatggaagttatgattgt---aacttatcatttaaattcatacttcaaggtcccaatgaagaattgtggtggtcaaca 9979  T
Q  841 gaggggataa 850  Q
    ||||||||||    
T  9978 gaggggataa 9969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 311 - 408
Target Start/End: Complemental strand, 10293 - 10196
Alignment:
Q  311 tttgattttcagacaatagaggcttcaataattattcctcctattccaaaatctgatttgtgcagttttatattttgcatcattctttctgtgggctt 408  Q
    ||||||||||||||||| | ||||||||||  ||||| ||||||| |||||||||| |||||  |||| |||||||||||||||||||||| ||||||    
T  10293 tttgattttcagacaatcggggcttcaatatctattcttcctattacaaaatctgacttgtgtggtttcatattttgcatcattctttctgagggctt 10196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 2e-52; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 35806790 - 35806899
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35806790 tttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 35806889  T
Q  573 agagatttac 582  Q
    ||||||||||    
T  35806890 agagatttac 35806899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 22324593 - 22324701
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22324593 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 22324692  T
Q  574 gagatttac 582  Q
    | |||||||    
T  22324693 gggatttac 22324701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 21525354 - 21525463
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21525354 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 21525453  T
Q  573 agagatttac 582  Q
    || |||||||    
T  21525454 agggatttac 21525463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 26021391 - 26021501
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26021391 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattca 26021490  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  26021491 tagggatttac 26021501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 473 - 574
Target Start/End: Complemental strand, 33934501 - 33934400
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  33934501 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcat 33934402  T
Q  573 ag 574  Q
    ||    
T  33934401 ag 33934400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 477 - 582
Target Start/End: Original strand, 42013872 - 42013977
Alignment:
Q  477 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagag 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |    
T  42013872 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatataagaaattcataggg 42013971  T
Q  577 atttac 582  Q
    ||||||    
T  42013972 atttac 42013977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 42072424 - 42072533
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42072424 tttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 42072523  T
Q  573 agagatttac 582  Q
    || |||||||    
T  42072524 agggatttac 42072533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 495 - 581
Target Start/End: Original strand, 24065291 - 24065377
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagattta 581  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagattta 24065377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 473 - 573
Target Start/End: Original strand, 19334778 - 19334879
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| ||||||||||| | ||||||||| ||||||||||| |||||||    
T  19334778 tttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattca 19334877  T
Q  572 ta 573  Q
    ||    
T  19334878 ta 19334879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 495 - 571
Target Start/End: Original strand, 21488084 - 21488160
Alignment:
Q  495 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||| ||||||| |||||||||||||    
T  21488084 tacataagaaattgcaagc-aataataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattca 21488160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 477 - 582
Target Start/End: Complemental strand, 16819105 - 16818996
Alignment:
Q  477 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatg---taaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||  | | |||| |||||||||||||||||||||| |     || ||||||| ||||||||||||||||||||||||||||||||     
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattcaa 16819006  T
Q  573 agagatttac 582  Q
     |||||||||    
T  16819005 ggagatttac 16818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 569
Target Start/End: Original strand, 10112042 - 10112139
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||| ||||||||||  | ||||||||||||||||  ||||||| |||||||  |||||||||| |||||||||| | ||||||||||||||||    
T  10112042 ttgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaatt 10112139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 529 - 582
Target Start/End: Original strand, 16523158 - 16523211
Alignment:
Q  529 taaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  16523158 taaagaagttgcccaatttatagggatttatataagaaattcatagggatttac 16523211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 571
Target Start/End: Complemental strand, 43282962 - 43282885
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatg-taaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||| |||||||||||||||||| |  ||| |||||| |||||||||||||| ||||||||| |||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattca 43282885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 2271196 - 2271289
Alignment:
Q  473 tttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    |||||||||||||||||||| ||  ||||||||||||| |||       |||||||| |||||||||| || ||| ||||||||||||||||||||||||    
T  2271196 tttgcaacacatttatagggggtttacataagaaattgtaag-------taaaaaatctaaagaaattacctaatatataggggtttatataagaaattc 2271288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 34697500 - 34697431
Alignment:
Q  495 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgcccaatttataggggtttatataa 563  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| | |||||||||| | |||||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 531 - 582
Target Start/End: Complemental strand, 16591449 - 16591398
Alignment:
Q  531 aagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    ||||||||||||||||||||| | |||||||||||||||| |||| ||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttac 16591398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 635
Target Start/End: Original strand, 42014019 - 42014052
Alignment:
Q  602 gcccgggatcgccgggccttagaaccgcccctga 635  Q
    ||||||| ||||||||||||||||||||||||||    
T  42014019 gcccggggtcgccgggccttagaaccgcccctga 42014052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 2e-52; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 44164875 - 44164766
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44164875 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 44164776  T
Q  573 agagatttac 582  Q
    ||| ||||||    
T  44164775 agaaatttac 44164766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 34707113 - 34707221
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34707113 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 34707212  T
Q  574 gagatttac 582  Q
    | |||||||    
T  34707213 gggatttac 34707221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 10576669 - 10576778
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10576669 tttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 10576768  T
Q  573 agagatttac 582  Q
    || |||||||    
T  10576769 agggatttac 10576778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 570
Target Start/End: Complemental strand, 24320571 - 24320474
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320571 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 24320474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 574
Target Start/End: Complemental strand, 29556071 - 29555970
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29556071 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 29555972  T
Q  573 ag 574  Q
    ||    
T  29555971 ag 29555970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 473 - 574
Target Start/End: Complemental strand, 32876662 - 32876561
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32876662 tttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 32876563  T
Q  573 ag 574  Q
    ||    
T  32876562 ag 32876561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 485 - 582
Target Start/End: Original strand, 34259526 - 34259623
Alignment:
Q  485 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttac 34259623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 29238275 - 29238166
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  29238275 tttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcat 29238176  T
Q  573 agagatttac 582  Q
    || |||||||    
T  29238175 agggatttac 29238166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 492 - 582
Target Start/End: Complemental strand, 29981226 - 29981136
Alignment:
Q  492 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||| |||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttac 29981136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 33057789 - 33057680
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||| | |||||||||||  ||||||||||||| |||||||||||||||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcat 33057690  T
Q  573 agagatttac 582  Q
    || |||||||    
T  33057689 agggatttac 33057680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 474 - 574
Target Start/End: Complemental strand, 19334693 - 19334591
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||  | ||||||||||| |||||||||||||||||||||||||||||||    
T  19334693 ttgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattca 19334594  T
Q  572 tag 574  Q
    |||    
T  19334593 tag 19334591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 474 - 574
Target Start/End: Complemental strand, 17303248 - 17303145
Alignment:
Q  474 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| | |||||||||||||||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattc 17303149  T
Q  571 atag 574  Q
    ||||    
T  17303148 atag 17303145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 10334173 - 10334272
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||||||||||||| | ||||||||||||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattca 10334272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 500 - 571
Target Start/End: Original strand, 9770682 - 9770753
Alignment:
Q  500 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||||||| |||| | ||||||||||| |||||| |||| |||||||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattca 9770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 474 - 580
Target Start/End: Complemental strand, 26284510 - 26284404
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||   |||| |||||||||||||     
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcag 26284412  T
Q  573 agagattt 580  Q
    || |||||    
T  26284411 agggattt 26284404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 15017817 - 15017867
Alignment:
Q  521 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||| ||||||||||| |||||||||| | ||||||||||||||||||    
T  15017817 aaaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattca 15017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 592 - 634
Target Start/End: Complemental strand, 24320442 - 24320400
Alignment:
Q  592 ttggcccggagcccgggatcgccgggccttagaaccgcccctg 634  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  24320442 ttggcccggagcccgggttcgtcgggccttagaaccgcccctg 24320400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 569
Target Start/End: Original strand, 41853128 - 41853226
Alignment:
Q  474 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||||||||||||| ||  || |||  ||||||||||||||||||  ||||||| |||| |||||| |||| |||||||  |||| ||||||||||    
T  41853128 ttgcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 6e-52; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 9231985 - 9231877
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9231985 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 9231886  T
Q  574 gagatttac 582  Q
    |||||||||    
T  9231885 gagatttac 9231877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 441 - 582
Target Start/End: Complemental strand, 14309962 - 14309821
Alignment:
Q  441 aggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 540  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309962 aggaatattgtaaagcctgggcaaaaaaaaaatttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 14309863  T
Q  541 ccaatttataggggtttatataagaaattcatagagatttac 582  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  14309862 ccaatttatagggatttatataagaaattcatagggatttac 14309821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 24694783 - 24694674
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24694783 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcat 24694684  T
Q  573 agagatttac 582  Q
    || |||||||    
T  24694683 agggatttac 24694674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 13627536 - 13627645
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13627536 tttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcat 13627635  T
Q  573 agagatttac 582  Q
    || |||||||    
T  13627636 agggatttac 13627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 503 - 582
Target Start/End: Complemental strand, 1728035 - 1727956
Alignment:
Q  503 aaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttac 1727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 27863694 - 27863804
Alignment:
Q  473 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattca 27863793  T
Q  572 tagagatttac 582  Q
     ||| ||||||    
T  27863794 gagaaatttac 27863804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 495 - 571
Target Start/End: Original strand, 34103703 - 34103779
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattca 34103779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 474 - 571
Target Start/End: Complemental strand, 28750783 - 28750684
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattca 28750684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 479 - 571
Target Start/End: Complemental strand, 13103246 - 13103152
Alignment:
Q  479 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattca 13103152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 11084606 - 11084659
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084606 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 495 - 571
Target Start/End: Original strand, 11212689 - 11212765
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |||||| || |||||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 11279536 - 11279634
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| |||||||||| || |||||||| |  ||||||||| |||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 533 - 571
Target Start/End: Complemental strand, 24497646 - 24497608
Alignment:
Q  533 gaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattca 24497608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 569
Target Start/End: Complemental strand, 8412757 - 8412717
Alignment:
Q  529 taaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  8412757 taaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 477 - 538
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  477 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 538  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 4e-50; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 23218481 - 23218590
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23218481 tttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 23218580  T
Q  573 agagatttac 582  Q
    || |||||||    
T  23218581 agggatttac 23218590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 37169165 - 37169056
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37169165 tttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 37169066  T
Q  573 agagatttac 582  Q
    || |||||||    
T  37169065 agggatttac 37169056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 38397595 - 38397703
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38397595 ttgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 38397694  T
Q  574 gagatttac 582  Q
    | |||||||    
T  38397695 gggatttac 38397703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 6257542 - 6257433
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6257542 tttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcat 6257443  T
Q  573 agagatttac 582  Q
    || |||||||    
T  6257442 agggatttac 6257433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 431 - 574
Target Start/End: Complemental strand, 39862660 - 39862518
Alignment:
Q  431 cggcgaagccaggaatattgtaaagcctgggcgnnnnnnnnntttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgta 530  Q
    ||||| ||||||||||||||||||||||||||          |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||    
T  39862660 cggcggagccaggaatattgtaaagcctgggc-aaaaaaaaatttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatcta 39862562  T
Q  531 aagaaattgcccaatttataggggtttatataagaaattcatag 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39862561 aagaaattgcccaatttataggggtttatataagaaattcatag 39862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 16618701 - 16618593
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcata 16618602  T
Q  574 gagatttac 582  Q
    | |||||||    
T  16618601 gggatttac 16618593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 477 - 581
Target Start/End: Original strand, 15631613 - 15631718
Alignment:
Q  477 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata-ggggtttatataagaaattcataga 575  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||     
T  15631613 caacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattcatagg 15631712  T
Q  576 gattta 581  Q
    ||||||    
T  15631713 gattta 15631718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 10081140 - 10081250
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||| |  |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  10081140 ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattca 10081239  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  10081240 tagggatttac 10081250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 8457096 - 8456986
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 8456997  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  8456996 tagggatttac 8456986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 473 - 571
Target Start/End: Complemental strand, 36769207 - 36769108
Alignment:
Q  473 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| ||||||||||||| |||| |||| |||||||||||||||||||    
T  36769207 tttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattca 36769108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 495 - 580
Target Start/End: Complemental strand, 9738094 - 9738008
Alignment:
Q  495 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagattt 580  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||    
T  9738094 tacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggattt 9738008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 11856290 - 11856400
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| | |||||||||||||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattca 11856389  T
Q  572 tagagatttac 582  Q
     || |||||||    
T  11856390 gagcgatttac 11856400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 25560460 - 25560350
Alignment:
Q  474 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||  |||||||||||||||| |    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattta 25560361  T
Q  572 tagagatttac 582  Q
    ||  |||||||    
T  25560360 taaggatttac 25560350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 477 - 571
Target Start/End: Complemental strand, 614522 - 614426
Alignment:
Q  477 caacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||| |||||||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattca 614426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 495 - 571
Target Start/End: Original strand, 6174762 - 6174840
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttata--ggggtttatataagaaattca 571  Q
    |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattca 6174840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 42119617 - 42119716
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattca 42119716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 498 - 571
Target Start/End: Complemental strand, 33271377 - 33271304
Alignment:
Q  498 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattca 33271304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 27916133 - 27916234
Alignment:
Q  473 tttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||||||||||||||  ||  | |||||||||||||| |||||||||||||| | ||| |||||||| ||||||||||| ||||||||||||||||    
T  27916133 tttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaatt 27916232  T
Q  570 ca 571  Q
    ||    
T  27916233 ca 27916234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 497 - 582
Target Start/End: Complemental strand, 29491521 - 29491437
Alignment:
Q  497 cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  29491521 cataagaaattgcaagcaaataatcaaaaaatttaaag-aattgtccaatttatagggg-ttatataagaaattcatagaaatttac 29491437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 495 - 573
Target Start/End: Complemental strand, 29790328 - 29790251
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||  |||||||||||||||||||||    
T  29790328 tacataagaaattaaaagcaaataatcaaaaac-taaagaaattgcccaatttataaaggtttatataagaaattcata 29790251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 503 - 568
Target Start/End: Original strand, 10115185 - 10115251
Alignment:
Q  503 aaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaat 568  Q
    |||||||||||||||||| ||||||| ||||||||||| | ||||||| ||||||||||||||||||    
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaat 10115251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 3341230 - 3341162
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataa 563  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| ||||||||||||||| ||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataa 3341162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 569
Target Start/End: Complemental strand, 19322106 - 19322058
Alignment:
Q  521 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  19322106 aaaaaatctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 602 - 634
Target Start/End: Original strand, 23218632 - 23218664
Alignment:
Q  602 gcccgggatcgccgggccttagaaccgcccctg 634  Q
    |||||||||||||||||||||||||||||||||    
T  23218632 gcccgggatcgccgggccttagaaccgcccctg 23218664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 496 - 544
Target Start/End: Complemental strand, 33188451 - 33188403
Alignment:
Q  496 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaa 544  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgcccaa 33188403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 582
Target Start/End: Complemental strand, 10052606 - 10052523
Alignment:
Q  500 aagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||||||||||||||  ||||| | ||||||||| || |||||||||  ||||||||||| | |||| || |||||||    
T  10052606 aagaaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttac 10052523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 636
Target Start/End: Complemental strand, 16618551 - 16618517
Alignment:
Q  602 gcccgggatcgccgggccttagaaccgcccctgat 636  Q
    ||||||| |||||||||||||||||||||||||||    
T  16618551 gcccggggtcgccgggccttagaaccgcccctgat 16618517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 22903252 - 22903329
Alignment:
Q  474 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaata--ataaaaaatg-taaagaaattgcccaattt 547  Q
    ||||||||||||||||| ||  |||||||||||||||||||||| |  ||||||||   |||||||||||||||||||    
T  22903252 ttgcaacacatttatagaggtttacataagaaattgcaagcaaaaagaataaaaaaaactaaagaaattgcccaattt 22903329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 635
Target Start/End: Complemental strand, 37169014 - 37168981
Alignment:
Q  602 gcccgggatcgccgggccttagaaccgcccctga 635  Q
    ||||||| ||||||||||||||||||||||||||    
T  37169014 gcccggggtcgccgggccttagaaccgcccctga 37168981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 4e-50; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 1535767 - 1535876
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1535767 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 1535866  T
Q  573 agagatttac 582  Q
    || |||||||    
T  1535867 agggatttac 1535876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 49284353 - 49284462
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49284353 tttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 49284452  T
Q  573 agagatttac 582  Q
    || |||||||    
T  49284453 agggatttac 49284462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 574
Target Start/End: Original strand, 25954746 - 25954847
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25954746 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcat 25954845  T
Q  573 ag 574  Q
    ||    
T  25954846 ag 25954847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 477 - 574
Target Start/End: Original strand, 34240993 - 34241090
Alignment:
Q  477 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34240993 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 34241090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 52632514 - 52632623
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52632514 tttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcat 52632613  T
Q  573 agagatttac 582  Q
    || |||||||    
T  52632614 agggatttac 52632623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 37801396 - 37801287
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  37801396 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaatttgcccaatttatagggatttatataaaaaattcat 37801297  T
Q  573 agagatttac 582  Q
    ||| ||||||    
T  37801296 agaaatttac 37801287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 477 - 582
Target Start/End: Complemental strand, 46583669 - 46583564
Alignment:
Q  477 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagag 576  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  46583669 caacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcataggg 46583570  T
Q  577 atttac 582  Q
    ||||||    
T  46583569 atttac 46583564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 36012317 - 36012208
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36012317 tttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 36012218  T
Q  573 agagatttac 582  Q
    || |||||||    
T  36012217 agggatttac 36012208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 473 - 574
Target Start/End: Original strand, 35018932 - 35019033
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  35018932 tttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatataagaaattcat 35019031  T
Q  573 ag 574  Q
    ||    
T  35019032 ag 35019033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 474 - 574
Target Start/End: Complemental strand, 17888683 - 17888581
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattca 17888584  T
Q  572 tag 574  Q
    |||    
T  17888583 tag 17888581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 474 - 540
Target Start/End: Complemental strand, 16338375 - 16338309
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338375 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 31377385 - 31377495
Alignment:
Q  474 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattca 31377484  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  31377485 tagggatttac 31377495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 474 - 570
Target Start/End: Complemental strand, 322682 - 322584
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 500 - 574
Target Start/End: Complemental strand, 16338318 - 16338244
Alignment:
Q  500 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 574  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcatag 16338244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 54090176 - 54090285
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||| |||||||     
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcag 54090275  T
Q  573 agagatttac 582  Q
    || |||||||    
T  54090276 agggatttac 54090285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 20818584 - 20818672
Alignment:
Q  495 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    ||||||||||||||||| |||||||| ||||||| |||| |||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatttac 20818672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 12792365 - 12792254
Alignment:
Q  473 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12792365 tttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattc 12792266  T
Q  571 atagagatttac 582  Q
    | ||| ||||||    
T  12792265 agagaaatttac 12792254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 479 - 571
Target Start/End: Complemental strand, 9742661 - 9742567
Alignment:
Q  479 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattca 9742567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 504 - 582
Target Start/End: Complemental strand, 10094495 - 10094416
Alignment:
Q  504 aattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  10094495 aattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttac 10094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 11054448 - 11054561
Alignment:
Q  474 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgcccaatttataggggtttatataagaaat 568  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| |||||||||||||||| ||||||||||||||||    
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaat 11054547  T
Q  569 tcatagagatttac 582  Q
    |||||| |||||||    
T  11054548 tcatagggatttac 11054561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 473 - 569
Target Start/End: Original strand, 50328790 - 50328888
Alignment:
Q  473 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||||||||||||| |||  ||||||| ||||||||||  |||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||    
T  50328790 tttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaatt 50328888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 474 - 581
Target Start/End: Complemental strand, 35322837 - 35322728
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| |||||||||||  |||||||||| ||||||||||||| |||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T
Q  572 tagagattta 581  Q
     ||| |||||    
T  35322737 gagaaattta 35322728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 473 - 571
Target Start/End: Original strand, 46473988 - 46474088
Alignment:
Q  473 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||  ||||||||| |||||||||||| ||||||    
T  46473988 tttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattc 46474087  T
Q  571 a 571  Q
    |    
T  46474088 a 46474088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 521 - 582
Target Start/End: Original strand, 47084056 - 47084117
Alignment:
Q  521 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  47084056 aaaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttac 47084117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 12897866 - 12898002
Alignment:
Q  48 ctgtggtccatccttgatggtatacagtctttaaaacggctaaaattgaaagagtgttgcaacttagatgttctccccgacaatatccaaaaccattcaa 147  Q
    ||||||| ||||||||| || ||||| |||||||||||  |||| |||| | | || |||||||||||   ||||||| |||| ||||||| | ||||||    
T  12897866 ctgtggttcatccttgacggcatacaatctttaaaacgattaaatttgagaaaatgctgcaacttagaaactctccccaacaacatccaaagcaattcaa 12897965  T
Q  148 tgctggaatggcttgatttagatgattgcaggaaact 184  Q
    || || || ||||| |||||||||| |||||||||||    
T  12897966 tgttgcaaaggcttaatttagatgaatgcaggaaact 12898002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 12898192 - 12898243
Alignment:
Q  310 gtttgattttcagacaatagaggcttcaataattattcctcctattccaaaa 361  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  12898192 gtttgattttcaaacaatagaggcgtcaatagttattcctcctattccaaaa 12898243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 592 - 635
Target Start/End: Original strand, 34241118 - 34241161
Alignment:
Q  592 ttggcccggagcccgggatcgccgggccttagaaccgcccctga 635  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  34241118 ttggcccggagcccggggtcgccgggccttagaaccgcccctga 34241161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 495 - 571
Target Start/End: Complemental strand, 19124849 - 19124772
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||  ||||||| ||  ||||||||||||||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaatttacagatgtttatataagaaattca 19124772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 569
Target Start/End: Complemental strand, 5780838 - 5780790
Alignment:
Q  521 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||| |||||||||||||||||||||| || |||||||||||||||    
T  5780838 aaaaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 592 - 631
Target Start/End: Original strand, 25954875 - 25954914
Alignment:
Q  592 ttggcccggagcccgggatcgccgggccttagaaccgccc 631  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  25954875 ttggcccggagcccggggtcgccgggccttagaaccgccc 25954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 635
Target Start/End: Complemental strand, 16338194 - 16338161
Alignment:
Q  602 gcccgggatcgccgggccttagaaccgcccctga 635  Q
    ||||||| ||||||||||||||||||||||||||    
T  16338194 gcccggggtcgccgggccttagaaccgcccctga 16338161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 4e-50; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 14186570 - 14186461
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14186570 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcat 14186471  T
Q  573 agagatttac 582  Q
    || |||||||    
T  14186470 agggatttac 14186461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 14942176 - 14942067
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14942176 tttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 14942077  T
Q  573 agagatttac 582  Q
    || |||||||    
T  14942076 agggatttac 14942067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 42769890 - 42769781
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42769890 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 42769791  T
Q  573 agagatttac 582  Q
    || |||||||    
T  42769790 agggatttac 42769781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 29846439 - 29846547
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29846439 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcata 29846538  T
Q  574 gagatttac 582  Q
    | |||||||    
T  29846539 gggatttac 29846547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 574
Target Start/End: Original strand, 19181544 - 19181645
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19181544 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 19181643  T
Q  573 ag 574  Q
    ||    
T  19181644 ag 19181645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 40277420 - 40277311
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  40277420 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttat 40277321  T
Q  573 agagatttac 582  Q
    || |||||||    
T  40277320 agggatttac 40277311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 473 - 581
Target Start/End: Complemental strand, 1387421 - 1387312
Alignment:
Q  473 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  1387421 tttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattca 1387322  T
Q  572 tagagattta 581  Q
    ||| ||||||    
T  1387321 tagggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 473 - 569
Target Start/End: Complemental strand, 3597999 - 3597903
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||    
T  3597999 tttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 6318592 - 6318481
Alignment:
Q  474 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattc 6318493  T
Q  571 atagagatttac 582  Q
    |||| |||||||    
T  6318492 atagggatttac 6318481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 3956567 - 3956677
Alignment:
Q  474 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||||||||||||| ||  |||||  |||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||| |||||||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattca 3956666  T
Q  572 tagagatttac 582  Q
    ||| |||||||    
T  3956667 tagggatttac 3956677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 41674841 - 41674729
Alignment:
Q  473 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||||| |||||||||||| |||||    
T  41674841 tttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaatt 41674742  T
Q  570 catagagatttac 582  Q
    || ||||||||||    
T  41674741 cagagagatttac 41674729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 43139766 - 43139839
Alignment:
Q  498 ataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaatt 43139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 473 - 571
Target Start/End: Complemental strand, 14539838 - 14539738
Alignment:
Q  473 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||||| |  || ||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||  ||||||||||||||||    
T  14539838 tttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattc 14539739  T
Q  571 a 571  Q
    |    
T  14539738 a 14539738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 473 - 581
Target Start/End: Original strand, 33009666 - 33009777
Alignment:
Q  473 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||||| |||||| |||  ||||||| ||||||||||||||||||||  ||||| ||||||||||| |||||||||| || ||||||||| |||||    
T  33009666 tttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaatt 33009765  T
Q  570 catagagattta 581  Q
    ||||| ||||||    
T  33009766 catagggattta 33009777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 40780050 - 40780150
Alignment:
Q  474 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggg-gtttatataagaaattc 570  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| |||||| | ||||||||||| |||||||||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattc 40780149  T
Q  571 a 571  Q
    |    
T  40780150 a 40780150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 474 - 571
Target Start/End: Complemental strand, 28321836 - 28321737
Alignment:
Q  474 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || |||||||||||||||||| |||||||||||||| |||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattca 28321737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 569
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  474 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| |||||| | |||||||| || |||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 2888058 - 2888146
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||  |||| ||||| |||||||||| | |||| ||||||  ||||||||||| |||||||||| ||||||||||||||||||    
T  2888058 tacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttac 2888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 25665244 - 25665316
Alignment:
Q  498 ataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||| |||||||||||||||||| ||||||  |||||||||| |||||||||||   ||||||||||||||||    
T  25665244 ataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 556
Target Start/End: Original strand, 32486239 - 32486323
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgcccaatttataggggtt 556  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| |||||||||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggggtt 32486323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 4e-50; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 3346782 - 3346891
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3346782 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcat 3346881  T
Q  573 agagatttac 582  Q
    || |||||||    
T  3346882 agggatttac 3346891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 7742911 - 7742802
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7742911 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 7742812  T
Q  573 agagatttac 582  Q
    |  |||||||    
T  7742811 aaggatttac 7742802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 49902464 - 49902573
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49902464 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcat 49902563  T
Q  573 agagatttac 582  Q
    || |||||||    
T  49902564 agggatttac 49902573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 29149680 - 29149571
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29149680 tttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattcat 29149581  T
Q  573 agagatttac 582  Q
    || |||||||    
T  29149580 agggatttac 29149571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 48392538 - 48392429
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  48392538 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcat 48392439  T
Q  573 agagatttac 582  Q
    || |||||||    
T  48392438 agggatttac 48392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 477 - 582
Target Start/End: Original strand, 5974988 - 5975093
Alignment:
Q  477 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagag 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttaggg 5975087  T
Q  577 atttac 582  Q
    ||||||    
T  5975088 atttac 5975093  T

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Target: chr1; HSP #7
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 473 - 582
Target Start/End: Complemental strand, 42517430 - 42517317
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggg----gtttatataagaaat 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  42517430 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtttatataagaaat 42517331  T
Q  569 tcatagagatttac 582  Q
    |||||| |||||||    
T  42517330 tcatagggatttac 42517317  T

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Target: chr1; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 473 - 574
Target Start/End: Complemental strand, 10156148 - 10156047
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||    
T  10156148 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcat 10156049  T
Q  573 ag 574  Q
    ||    
T  10156048 ag 10156047  T

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Target: chr1; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 473 - 582
Target Start/End: Original strand, 47022698 - 47022807
Alignment:
Q  473 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcat 572  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||    
T  47022698 tttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcat 47022797  T
Q  573 agagatttac 582  Q
    ||||||||||    
T  47022798 agagatttac 47022807  T

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Target: chr1; HSP #10
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 474 - 574
Target Start/End: Original strand, 23908282 - 23908382
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcata 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||||||||||    
T  23908282 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaacataaagaaattgtccaatttatagggatttatataagaaattcata 23908381  T
Q  574 g 574  Q
    |    
T  23908382 g 23908382  T

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Target: chr1; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 477 - 574
Target Start/End: Original strand, 38859849 - 38859948
Alignment:
Q  477 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 574  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T

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Target: chr1; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 474 - 571
Target Start/End: Complemental strand, 10907781 - 10907682
Alignment:
Q  474 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| ||||||||||| |  ||||||||||||||||||||||||||||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattca 10907682  T

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Target: chr1; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 502 - 570
Target Start/End: Original strand, 5558334 - 5558402
Alignment:
Q  502 gaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattc 5558402  T

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Target: chr1; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 473 - 573
Target Start/End: Original strand, 26835332 - 26835434
Alignment:
Q  473 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    ||||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| ||||||  ||||||||||| |||||||||||||||||    
T  26835332 tttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattc 26835431  T
Q  571 ata 573  Q
    |||    
T  26835432 ata 26835434  T

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Target: chr1; HSP #15
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 30745361 - 30745449
Alignment:
Q  495 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttac 30745449  T

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Target: chr1; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 30766812 - 30766900
Alignment:
Q  495 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttac 30766900  T

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Target: chr1; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 474 - 574
Target Start/End: Original strand, 42456566 - 42456669
Alignment:
Q  474 ttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaatgt-aaagaaattgcccaatttataggggtttatataagaaattc 570  Q
    |||||||||||||||||||  |  ||||||||||||||||| | ||||||||   | | |||||||||||||||||||||||||||||||||||||||||    
T  42456566 ttgcaacacatttataggggatttacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaaattc 42456665  T
Q  571 atag 574  Q
    ||||    
T  42456666 atag 42456669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 30252856 - 30252787
Alignment:
Q  495 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataa 563  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||| | ||||||||||| |||||||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataa 30252787  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 534 - 582
Target Start/End: Original strand, 37189697 - 37189745
Alignment:
Q  534 aaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttac 37189745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 473 - 563
Target Start/End: Complemental strand, 44107522 - 44107430
Alignment:
Q  473 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataa 563  Q
    ||||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||    |||||||||||||||||||||    
T  44107522 tttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataa 44107430  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 571
Target Start/End: Original strand, 45968685 - 45968761
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||||||||||| ||||||| |||||| || | |||||| |||||||||| | | |||||||| |||||||    
T  45968685 tacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattca 45968761  T

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Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 14796871 - 14796970
Alignment:
Q  474 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| | || |||||||||||||||    
T  14796871 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14796970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 474 - 571
Target Start/End: Original strand, 14805745 - 14805844
Alignment:
Q  474 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||| ||||||||| |||  |||||||||||||||||||||||| |  |||||| ||||| ||| ||| |||||||| | || |||||||||||||||    
T  14805745 ttgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattca 14805844  T

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Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 495 - 569
Target Start/End: Original strand, 13131914 - 13131988
Alignment:
Q  495 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||||||||||||| | ||||  |||||  ||||||||||| ||||||||||| | ||||||||| |||||    
T  13131914 tacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatt 13131988  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 499 - 571
Target Start/End: Complemental strand, 26511739 - 26511667
Alignment:
Q  499 taagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    |||||||||| ||| ||||||| |||||| ||||||||||   ||||||| |||  |||||||||||||||||    
T  26511739 taagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattca 26511667  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 496 - 538
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  496 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 538  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

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Target: scaffold0079 (Bit Score: 67; Significance: 3e-29; HSPs: 3)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 474 - 540
Target Start/End: Original strand, 54485 - 54551
Alignment:
Q  474 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54485 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 500 - 574
Target Start/End: Original strand, 54542 - 54616
Alignment:
Q  500 aagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 574  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataaaaaattcatag 54616  T

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Target: scaffold0079; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 635
Target Start/End: Original strand, 54666 - 54699
Alignment:
Q  602 gcccgggatcgccgggccttagaaccgcccctga 635  Q
    ||||||| ||||||||||||||||||||||||||    
T  54666 gcccggggtcgccgggccttagaaccgcccctga 54699  T

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Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 495 - 582
Target Start/End: Complemental strand, 34563 - 34475
Alignment:
Q  495 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttac 582  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| || ||||||||||| | |||||||||  |||||| || |||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttac 34475  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 521 - 571
Target Start/End: Complemental strand, 20915 - 20865
Alignment:
Q  521 aaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 571  Q
    ||||||| |||| |||||| ||||||||||| | |||||||||||||||||    
T  20915 aaaaaatctaaaaaaattgtccaatttatagagctttatataagaaattca 20865  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 569
Target Start/End: Original strand, 85547 - 85592
Alignment:
Q  524 aaatgtaaagaaattgcccaatttataggggtttatataagaaatt 569  Q
    |||||||||||||||| ||||||||||||| ||| ||||| |||||    
T  85547 aaatgtaaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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