View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5604-Insertion-4 (Length: 505)
Name: NF5604-Insertion-4
Description: NF5604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5604-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 31 - 505
Target Start/End: Original strand, 21242699 - 21243173
Alignment:
| Q |
31 |
ctaataggtaatgcaacgggttcatacacaaactttaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaaccatgtga |
130 |
Q |
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| T |
21242699 |
ctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtga |
21242798 |
T |
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| Q |
131 |
aacacaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaccagaacttcatcgcagcatcgttgat |
230 |
Q |
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| T |
21242799 |
aacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcgtcgttgat |
21242898 |
T |
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| Q |
231 |
gataaacatggatgacgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgca |
330 |
Q |
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| T |
21242899 |
gataaacatggatgatgatttagctggggaattaaacaatgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgca |
21242998 |
T |
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| Q |
331 |
cagctcaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgactgagaagtatcaagtgacgaacttgtgggttg |
430 |
Q |
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| T |
21242999 |
cagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttg |
21243098 |
T |
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| Q |
431 |
tgccaccgatgattcttgctttagcgaaacaaagtgtggtagggaaatatgatgtttcttctctgacgagtattg |
505 |
Q |
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| T |
21243099 |
tgccaccgatgattcttgctttagcgaaacagagtgtggttgggaaatatgatgtttcttctttgaagagtattg |
21243173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 34 - 505
Target Start/End: Original strand, 21258478 - 21258938
Alignment:
| Q |
34 |
ataggtaatgcaacgggttcatacacaaactttaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaaccatgtgaaac |
133 |
Q |
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| T |
21258478 |
ataggtaatgcaacaggttgaaattcgaacttcacgagttttgaggcgttgatagaatcagctggggaagtaacagaaataccagaaagcaacgtgaaac |
21258577 |
T |
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| Q |
134 |
acaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaccagaacttcatcgcagcatcgttgatgat |
233 |
Q |
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| T |
21258578 |
agactgaca-------acttctgtactcatcaggaactacaggagtgagcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgatgat |
21258670 |
T |
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| Q |
234 |
aaacatggatgacgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacag |
333 |
Q |
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| T |
21258671 |
aaacatggatgatgatttagcaggggaattaaat---gtgttcctctgcgttttaccgatgtttcatgtgtttagattggcggttataacatacgcgcag |
21258767 |
T |
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| Q |
334 |
ctcaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgactgagaagtatcaagtgacgaacttgtgggttgtgc |
433 |
Q |
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| T |
21258768 |
ctaaggagaggaagtgcggtggtttcaacggggagatttgagttagaggg-tttttgaaggtgattgaaaagtatagagtgacaactttgtgggttgtgc |
21258866 |
T |
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| Q |
434 |
caccgatgattcttgctttagcgaaacaaagtgtggtagggaaatatgatgtttcttctctgacgagtattg |
505 |
Q |
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| T |
21258867 |
catcgatgaatcttgctttggcgaaacagagtgtggttgggaaatatgatgtttcttcgttgaagagtattg |
21258938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 39 - 427
Target Start/End: Original strand, 21253967 - 21254357
Alignment:
| Q |
39 |
taatgcaacgggttcatacacaaactttaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaaccatgtgaaacacacc |
138 |
Q |
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| T |
21253967 |
taatgtaacgggttcaaattcaaacttcaccagttttgagtcgttgattgaaacagcatgagaagtaacagaattaccagaaaacgatgtgaaacaaagc |
21254066 |
T |
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| Q |
139 |
gatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaccagaacttcatcgcagcatcgttgatgataaaca |
238 |
Q |
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| T |
21254067 |
gatacagcggctttgttgtactcatcaggaacaacaggagtgagcaagggcgtgatacttacccacaagaacgtcattgcggtggcgttaatgattaaca |
21254166 |
T |
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| Q |
239 |
tggatgacgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgt---ttcatgtgtttggattggcggttataacatacgcacagct |
335 |
Q |
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| T |
21254167 |
tggacgatgatttagcaggggaattaaacaacgtgttcttctgcgttttaccgatgtttattcatgtgtttagattggtggttataacatacgcgcagct |
21254266 |
T |
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| Q |
336 |
caggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgactgagaagtatcaagtgacgaacttgtggg |
427 |
Q |
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| T |
21254267 |
aaggagaggaagtacggtggtttcaacggggaggtttgagttagaggg-tttttgaaggtgattgagaagcatagagtgacgaatttgtggg |
21254357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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