View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5604_high_2 (Length: 419)

Name: NF5604_high_2
Description: NF5604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5604_high_2
NF5604_high_2
[»] chr5 (6 HSPs)
chr5 (58-419)||(34708564-34708927)
chr5 (170-257)||(36580996-36581083)
chr5 (61-106)||(5406628-5406673)
chr5 (270-314)||(7336115-7336159)
chr5 (247-311)||(3758928-3758992)
chr5 (270-314)||(11135744-11135788)
[»] chr7 (5 HSPs)
chr7 (148-257)||(5060927-5061036)
chr7 (239-311)||(23344446-23344518)
chr7 (231-311)||(28138765-28138845)
chr7 (240-314)||(23345047-23345121)
chr7 (238-311)||(41957565-41957638)
[»] chr1 (3 HSPs)
chr1 (177-311)||(42883114-42883248)
chr1 (174-257)||(27039342-27039425)
chr1 (256-314)||(42883771-42883829)
[»] chr4 (2 HSPs)
chr4 (169-257)||(37576641-37576729)
chr4 (247-311)||(37576549-37576613)
[»] chr3 (5 HSPs)
chr3 (173-243)||(33148918-33148987)
chr3 (148-217)||(26997833-26997902)
chr3 (196-237)||(4969993-4970034)
chr3 (178-222)||(26998205-26998248)
chr3 (247-311)||(33450042-33450106)
[»] chr2 (6 HSPs)
chr2 (241-311)||(17797014-17797084)
chr2 (247-316)||(38147080-38147149)
chr2 (240-311)||(19984704-19984775)
chr2 (268-311)||(31133185-31133228)
chr2 (241-303)||(38226219-38226281)
chr2 (177-222)||(2831430-2831474)
[»] chr6 (3 HSPs)
chr6 (159-214)||(1826184-1826239)
chr6 (270-311)||(1826590-1826631)
chr6 (231-268)||(11182055-11182092)
[»] chr8 (1 HSPs)
chr8 (196-238)||(43996005-43996047)


Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 58 - 419
Target Start/End: Original strand, 34708564 - 34708927
Alignment:
Q  58 taacagaagacattgattgcaagactgaatcatgtaagaaaattaaggg--tcaaattgttaatctaattgtgccgcttaatgcaatatcactgtcttat 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34708564 taacagaagacattgattgcaagactgaatcatgtaagaaaattaagggattcaaattgttaatctaattgtgccgcttaatgcaatatcactgtcttat 34708663  T
Q  156 agttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  34708664 agttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagttaactcatgc 34708763  T
Q  256 agggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagcataactccgattttaattatgctacatggatcctctaaattgagt 355  Q
    |||||||||||||||||||| ||| |||||||| ||||   |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  34708764 agggataatatggacatttattttggaaatgagtaaaaccgtttgagtaaagagcataatttcgattttaattatgctacatggatcctctaaattgagt 34708863  T
Q  356 ggtttaattatgctacctggatccattaatgggaagcaatgggagagagccataaacacaggaa 419  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34708864 ggtttaattatgctacctggatccattgatgggaagcaatgggagagagccataaacacaggaa 34708927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 36580996 - 36581083
Alignment:
Q  170 agccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgcag 257  Q
    |||||||||||| || |||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||| || ||||||||    
T  36580996 agccatgaaaactaaggtgagttaattcacgttgggatttcaatgtcatttttgcataattataactagcgtgagttaattcacgcag 36581083  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 5406673 - 5406628
Alignment:
Q  61 cagaagacattgattgcaagactgaatcatgtaagaaaattaaggg 106  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||    
T  5406673 cagaagacagtgattgcaagactgaatcatgtaaaaaaattaaggg 5406628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 7336115 - 7336159
Alignment:
Q  270 catttactttagaaatgagcaaaattatttgggtaaagagcataa 314  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  7336115 catttactttagaaatgagcaaaactatttaggtaaagagcataa 7336159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 3758992 - 3758928
Alignment:
Q  247 aactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    ||||||||||||||||||||| ||||||||||| | |||||| ||||   ||| |||||||||||    
T  3758992 aactcacgcagggataatatgaacatttactttgggaatgagtaaaaccgttttggtaaagagca 3758928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 11135788 - 11135744
Alignment:
Q  270 catttactttagaaatgagcaaaattatttgggtaaagagcataa 314  Q
    |||||| ||| ||||||||| |||| |||||||||||||||||||    
T  11135788 catttattttggaaatgagcgaaatcatttgggtaaagagcataa 11135744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 5061036 - 5060927
Alignment:
Q  148 tgtcttatagttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaa 247  Q
    ||||||||| |||||| ||| |  | ||||||| ||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||| |    
T  5061036 tgtcttatatttgttgtccactgactatgaaaatcaacgtgagttaactcacattggaatttcaatgtgatttttgcagaattataactagtgtgagtta 5060937  T
Q  248 actcacgcag 257  Q
    ||||||||||    
T  5060936 actcacgcag 5060927  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 23344518 - 23344446
Alignment:
Q  239 tgtgagtaaactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    ||||||| |||||||||| || |||||||||||||||||||| ||||||||||||   |||||||||||||||    
T  23344518 tgtgagttaactcacgcacgggtaatatggacatttactttaaaaatgagcaaaaccgtttgggtaaagagca 23344446  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 28138845 - 28138765
Alignment:
Q  231 ataactagtgtgagtaaactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    |||||||| |||||| || |||||||||| || | ||| |||||||||| | |||||||||||| ||||||||||||||||    
T  28138845 ataactagcgtgagttaagtcacgcaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagca 28138765  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 23345047 - 23345121
Alignment:
Q  240 gtgagtaaactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagcataa 314  Q
    |||||| |||| ||||| ||  |||||| ||||||| ||| | ||||||||||||  ||||||||||||||||||    
T  23345047 gtgagttaacttacgcatgggcaatatgaacatttattttgggaatgagcaaaatcgtttgggtaaagagcataa 23345121  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Original strand, 41957565 - 41957638
Alignment:
Q  238 gtgtgagtaaactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    |||||||| || |||||||| |||| | ||| |||||||||| | ||||| ||||||  |||||||||||||||    
T  41957565 gtgtgagttaagtcacgcagagatattttggtcatttactttgggaatgatcaaaatcgtttgggtaaagagca 41957638  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 42883248 - 42883114
Alignment:
Q  177 aaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatt-tataactagtgtgagtaaactcacgcagggataatatggacattta 275  Q
    |||| ||||||||||||| | ||||||||||| |||| |||||||| || |   ||||||||| |||||| |||||||||||||| |||||| |||||||    
T  42883248 aaaatcaacgtgagttaacttacgttgggatt-caatatgattttttcaaaaaatataactagcgtgagttaactcacgcagggacaatatgaacattta 42883150  T
Q  276 ctttagaaatgagcaaaattatttgggtaaagagca 311  Q
    ||||||  |||||||||| | |||||||||||||||    
T  42883149 ctttaggtatgagcaaaactgtttgggtaaagagca 42883114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 27039425 - 27039342
Alignment:
Q  174 atgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgcag 257  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||  || |||||| | | |||||| |||||||||||    
T  27039425 atgaaaaccaacgtgagttaactcacgttgggatttcaatgtaatttttgttgaattataatttgcgtgagttaactcacgcag 27039342  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 42883771 - 42883829
Alignment:
Q  256 agggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagcataa 314  Q
    ||||||| | |||||||||| |||||||||||||||||  |||| | ||||||||||||    
T  42883771 agggatattttggacatttattttagaaatgagcaaaaccatttagctaaagagcataa 42883829  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 37576729 - 37576641
Alignment:
Q  169 tagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgcag 257  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| | |||||||||| ||| || |||||||||||    
T  37576729 tagccatgaaaaccaacatgagttaactcacgttgagatttcaatgtcatttttgcataattataactagcgtgtgttaactcacgcag 37576641  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 37576613 - 37576549
Alignment:
Q  247 aactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    |||||||| |||| ||||||||||||||||||| |||| ||||||||   ||||||||| |||||    
T  37576613 aactcacgtaggggtaatatggacatttactttggaaacgagcaaaaccgtttgggtaatgagca 37576549  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 33148987 - 33148918
Alignment:
Q  173 catgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtga 243  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||| ||||    
T  33148987 catgaaaaccaacgtgagttaactcacgttgg-atttcaatgtcatttttgcagaattataactagcgtga 33148918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 26997902 - 26997833
Alignment:
Q  148 tgtcttatagttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtga 217  Q
    ||||||||| || ||||| | |||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  26997902 tgtcttatatttattgcctactagccatgaaaaccaatgtgagttaactcacgttggaatttcaatgtga 26997833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 4970034 - 4969993
Alignment:
Q  196 tcacgttgggatttcaatgtgatttttgcagatttataacta 237  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  4970034 tcacgttgggattttaatgtgatttttgcagaattataacta 4969993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 26998205 - 26998248
Alignment:
Q  178 aaaccaacgtgagttaattcacgttgggatttcaatgtgattttt 222  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||    
T  26998205 aaaccaacgtgagttaactcacgttggta-ttcaatgtgattttt 26998248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 33450042 - 33450106
Alignment:
Q  247 aactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    |||||||||||||| |||||||||||||| |||   |||||||||||   ||||||||| |||||    
T  33450042 aactcacgcagggacaatatggacatttattttgagaatgagcaaaacagtttgggtaatgagca 33450106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 17797014 - 17797084
Alignment:
Q  241 tgagtaaactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    ||||| |||||||||||||  |||||||||||||||||| | ||  ||||||||| |||||||||||||||    
T  17797014 tgagttaactcacgcaggggcaatatggacatttactttgggaacaagcaaaattgtttgggtaaagagca 17797084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 38147080 - 38147149
Alignment:
Q  247 aactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagcataact 316  Q
    ||||||||||| | ||||||| ||||||||||||| ||||||| ||   |||||||||||||||| ||||    
T  38147080 aactcacgcagaggtaatatgaacatttactttaggaatgagcgaatccatttgggtaaagagcaaaact 38147149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 19984704 - 19984775
Alignment:
Q  240 gtgagtaaactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    |||||| ||||||||||||| || | ||| ||||||||||||||| ||||| ||   |||||||||||||||    
T  19984704 gtgagttaactcacgcaggggtattttggtcatttactttagaaacgagcataaccgtttgggtaaagagca 19984775  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 31133228 - 31133185
Alignment:
Q  268 gacatttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||    
T  31133228 gacatttactttaaaaatgagcgaaatgatttgggtaaagagca 31133185  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 38226219 - 38226281
Alignment:
Q  241 tgagtaaactcacgcagggataatatggacatttactttagaaatgagcaaaattatttgggt 303  Q
    ||||||||||||||||||| || | ||| ||||||| || |||||| ||||||| ||||||||    
T  38226219 tgagtaaactcacgcaggggtattttggtcatttacattggaaatgggcaaaatcatttgggt 38226281  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 2831430 - 2831474
Alignment:
Q  177 aaaaccaacgtgagttaattcacgttgggatttcaatgtgattttt 222  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  2831430 aaaatcaacgtgagttaactcacgttggga-ttcaatgtgattttt 2831474  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 1826239 - 1826184
Alignment:
Q  159 tgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatg 214  Q
    |||||| || || ||||||||||||||||||||||| |||||||||||||| ||||    
T  1826239 tgttgctcactacccatgaaaaccaacgtgagttaactcacgttgggatttaaatg 1826184  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 1826590 - 1826631
Alignment:
Q  270 catttactttagaaatgagcaaaattatttgggtaaagagca 311  Q
    ||||||||||| ||||||||||||| |||||| |||||||||    
T  1826590 catttactttaaaaatgagcaaaatcatttggataaagagca 1826631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 11182055 - 11182092
Alignment:
Q  231 ataactagtgtgagtaaactcacgcagggataatatgg 268  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  11182055 ataactagtgtgagttaactcactcagggataatatgg 11182092  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 43996047 - 43996005
Alignment:
Q  196 tcacgttgggatttcaatgtgatttttgcagatttataactag 238  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  43996047 tcacgttgagatttcaatgtgatttttgcagaattataactag 43996005  T

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