View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5604_low_6 (Length: 248)

Name: NF5604_low_6
Description: NF5604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5604_low_6
NF5604_low_6
[»] chr8 (11 HSPs)
chr8 (1-215)||(44549856-44550071)
chr8 (210-248)||(26876086-26876124)
chr8 (213-248)||(17683828-17683863)
chr8 (213-248)||(17973563-17973598)
chr8 (214-248)||(30938281-30938315)
chr8 (215-248)||(17664672-17664705)
chr8 (215-248)||(26873636-26873669)
chr8 (213-248)||(1407105-1407140)
chr8 (215-248)||(4839814-4839847)
chr8 (215-248)||(39837594-39837627)
chr8 (215-248)||(39845637-39845670)
[»] chr7 (8 HSPs)
chr7 (212-248)||(12978452-12978488)
chr7 (215-248)||(4941609-4941642)
chr7 (215-248)||(10439937-10439970)
chr7 (215-248)||(18304424-18304457)
chr7 (213-248)||(30244773-30244808)
chr7 (215-248)||(13839531-13839564)
chr7 (212-248)||(30245565-30245601)
chr7 (212-248)||(30255410-30255445)
[»] chr6 (14 HSPs)
chr6 (212-248)||(23925332-23925368)
chr6 (213-248)||(30824561-30824596)
chr6 (215-248)||(5004061-5004094)
chr6 (215-248)||(5489151-5489184)
chr6 (215-248)||(5994699-5994732)
chr6 (215-248)||(13490193-13490226)
chr6 (215-248)||(25550295-25550328)
chr6 (215-248)||(35091708-35091741)
chr6 (214-248)||(11279836-11279870)
chr6 (214-248)||(25506573-25506607)
chr6 (215-248)||(11053702-11053735)
chr6 (215-248)||(13825703-13825736)
chr6 (215-248)||(15391643-15391676)
chr6 (215-248)||(33298085-33298118)
[»] chr4 (9 HSPs)
chr4 (212-248)||(21532336-21532372)
chr4 (213-248)||(10638326-10638361)
chr4 (213-248)||(27343723-27343758)
chr4 (214-248)||(8103120-8103154)
chr4 (214-248)||(12428510-12428544)
chr4 (215-248)||(8094314-8094347)
chr4 (215-248)||(12996476-12996509)
chr4 (215-248)||(52295604-52295637)
chr4 (215-248)||(4523712-4523745)
[»] chr5 (16 HSPs)
chr5 (213-248)||(19223553-19223588)
chr5 (213-248)||(29186310-29186345)
chr5 (215-248)||(20372945-20372978)
chr5 (215-248)||(20398667-20398700)
chr5 (215-248)||(24956878-24956911)
chr5 (215-248)||(24965341-24965374)
chr5 (212-248)||(31421786-31421822)
chr5 (213-248)||(31410888-31410923)
chr5 (215-248)||(1728191-1728224)
chr5 (215-248)||(23350108-23350141)
chr5 (215-248)||(28843940-28843973)
chr5 (215-248)||(28852550-28852583)
chr5 (215-248)||(43598078-43598111)
chr5 (215-248)||(43603570-43603603)
chr5 (215-248)||(43609062-43609095)
chr5 (214-242)||(29188492-29188520)
[»] chr2 (21 HSPs)
chr2 (213-248)||(14582923-14582958)
chr2 (213-248)||(42249487-42249522)
chr2 (214-248)||(15953104-15953138)
chr2 (214-248)||(25483600-25483634)
chr2 (214-248)||(25491206-25491240)
chr2 (215-248)||(15944589-15944622)
chr2 (215-248)||(17687430-17687463)
chr2 (215-248)||(20372345-20372378)
chr2 (215-248)||(20621518-20621551)
chr2 (215-248)||(35138593-35138626)
chr2 (215-248)||(35146929-35146962)
chr2 (215-248)||(41233876-41233909)
chr2 (213-248)||(38168389-38168424)
chr2 (213-248)||(44372703-44372738)
chr2 (213-248)||(44388614-44388649)
chr2 (215-244)||(24285696-24285725)
chr2 (215-244)||(24292372-24292401)
chr2 (215-248)||(34070636-34070669)
chr2 (215-248)||(42565961-42565994)
chr2 (215-248)||(42574585-42574618)
chr2 (214-242)||(21322848-21322876)
[»] chr1 (10 HSPs)
chr1 (213-248)||(35104096-35104131)
chr1 (210-248)||(31539949-31539987)
chr1 (215-248)||(21498930-21498963)
chr1 (215-248)||(31548523-31548556)
chr1 (214-245)||(44320227-44320258)
chr1 (214-248)||(20314059-20314093)
chr1 (215-248)||(3432922-3432955)
chr1 (215-248)||(29221520-29221553)
chr1 (214-242)||(22646705-22646733)
chr1 (217-245)||(28457556-28457584)
[»] scaffold0497 (1 HSPs)
scaffold0497 (214-248)||(10992-11026)
[»] scaffold0431 (1 HSPs)
scaffold0431 (214-248)||(138-172)
[»] scaffold0111 (1 HSPs)
scaffold0111 (214-248)||(33034-33068)
[»] scaffold0083 (1 HSPs)
scaffold0083 (214-248)||(15812-15846)
[»] scaffold0039 (1 HSPs)
scaffold0039 (214-248)||(40865-40899)
[»] scaffold0002 (1 HSPs)
scaffold0002 (214-248)||(121227-121261)
[»] chr3 (18 HSPs)
chr3 (214-248)||(30508-30542)
chr3 (215-248)||(8197728-8197761)
chr3 (215-248)||(14538637-14538670)
chr3 (215-248)||(17628265-17628298)
chr3 (215-248)||(17919199-17919232)
chr3 (215-248)||(27341367-27341400)
chr3 (215-248)||(28470249-28470282)
chr3 (215-248)||(50824352-50824385)
chr3 (215-248)||(50851475-50851508)
chr3 (213-245)||(18039009-18039041)
chr3 (215-248)||(2211239-2211272)
chr3 (215-248)||(8154676-8154709)
chr3 (215-248)||(9525466-9525499)
chr3 (215-248)||(9555140-9555173)
chr3 (215-248)||(17933655-17933688)
chr3 (215-248)||(41006556-41006589)
chr3 (215-248)||(41015336-41015369)
chr3 (214-242)||(21186746-21186774)
[»] scaffold0991 (1 HSPs)
scaffold0991 (215-248)||(405-438)
[»] scaffold0156 (1 HSPs)
scaffold0156 (215-248)||(35388-35421)
[»] scaffold0048 (1 HSPs)
scaffold0048 (215-248)||(7661-7694)
[»] scaffold0016 (1 HSPs)
scaffold0016 (215-248)||(23464-23497)
[»] scaffold0015 (1 HSPs)
scaffold0015 (215-248)||(192528-192561)
[»] scaffold0209 (1 HSPs)
scaffold0209 (214-248)||(116-150)
[»] scaffold1487 (1 HSPs)
scaffold1487 (204-248)||(775-820)
[»] scaffold0863 (1 HSPs)
scaffold0863 (215-244)||(408-437)
[»] scaffold0222 (1 HSPs)
scaffold0222 (215-244)||(20518-20547)
[»] scaffold0044 (1 HSPs)
scaffold0044 (215-248)||(81818-81851)
[»] scaffold0027 (1 HSPs)
scaffold0027 (215-248)||(65710-65743)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 44549856 - 44550071
Alignment:
Q  1 caagattactcgcaaagcctccaaaaaatattcccctaaaatctcgaaaaatcccaccgcaagcagcatttaaattaacgaccgaaccatccgtattcgc 100  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44549856 caagattagtcgcaaagcctcccaaaaatattcccctaaaatctcgaaaaatcccaccgcaagcagcatttaaattaacgaccgaaccatccgtattcgc 44549955  T
Q  101 ct-gacccaagtgatggtgggaggtttccaaaccactgtaataatatctgcaacacgcctgtgcaaaggagggaccagaaatgcatccaataaatcaaca 199  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44549956 cttgacccaagtgatggtgggaggtttccaaaccactgtaataatatctgcaacacgcctgtgcaaaggagggaccagaaatgcatccaataaatcaaca 44550055  T
Q  200 tcacataataaacatt 215  Q
    ||||||||||||||||    
T  44550056 tcacataataaacatt 44550071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 248
Target Start/End: Complemental strand, 26876124 - 26876086
Alignment:
Q  210 aacattgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26876124 aacattgtcataccccaaattttgaccacttttctctat 26876086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 17683863 - 17683828
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  17683863 attgtcataccccaaattttgaccacttttctctat 17683828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 17973563 - 17973598
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  17973563 attgtcataccccaaattttgaccacttttctctat 17973598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 30938281 - 30938315
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  30938281 ttgtcataccccaaattttgaccacttttctctat 30938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 17664705 - 17664672
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  17664705 tgtcataccccaaattttgaccacttttctctat 17664672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 26873669 - 26873636
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  26873669 tgtcataccccaaattttgaccacttttctctat 26873636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 1407140 - 1407105
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1407140 attgtcataccccaaattttgaccactttcctctat 1407105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 4839847 - 4839814
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||| |||||||||||    
T  4839847 tgtcataccccaaattttgaccgcttttctctat 4839814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 39837627 - 39837594
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  39837627 tgtcataccccaaattttgaccactttcctctat 39837594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 39845670 - 39845637
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  39845670 tgtcataccccaaattttgaccactttcctctat 39845637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 12978452 - 12978488
Alignment:
Q  212 cattgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  12978452 cattgtcataccccaaattttgaccacttttctctat 12978488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 4941642 - 4941609
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctat 4941609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 10439937 - 10439970
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  10439937 tgtcataccccaaattttgaccacttttctctat 10439970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 18304457 - 18304424
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  18304457 tgtcataccccaaattttgaccacttttctctat 18304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 30244773 - 30244808
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||| ||||||||||||||||||||||||    
T  30244773 attgtcatacctcaaattttgaccacttttctctat 30244808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 13839531 - 13839564
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  13839531 tgtcataccccaaattttgaccactttcctctat 13839564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 30245565 - 30245601
Alignment:
Q  212 cattgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||| || ||||||||||||||||||||    
T  30245565 cattgtcatacccaaatttttgaccacttttctctat 30245601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 30255410 - 30255445
Alignment:
Q  212 cattgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||| |||||||||||||||||||||||    
T  30255410 cattgtcataccc-aaattttgaccacttttctctat 30255445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 23925332 - 23925368
Alignment:
Q  212 cattgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  23925332 cattgtcataccccaaattttgaccacttttctctat 23925368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 30824596 - 30824561
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  30824596 attgtcataccccaaattttgaccacttttctctat 30824561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 5004061 - 5004094
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  5004061 tgtcataccccaaattttgaccacttttctctat 5004094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 5489184 - 5489151
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  5489184 tgtcataccccaaattttgaccacttttctctat 5489151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 5994699 - 5994732
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  5994699 tgtcataccccaaattttgaccacttttctctat 5994732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 13490193 - 13490226
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  13490193 tgtcataccccaaattttgaccacttttctctat 13490226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 25550295 - 25550328
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  25550295 tgtcataccccaaattttgaccacttttctctat 25550328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 35091741 - 35091708
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  35091741 tgtcataccccaaattttgaccacttttctctat 35091708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 11279836 - 11279870
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||| ||||||    
T  11279836 ttgtcataccccaaattttgaccactttcctctat 11279870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 25506607 - 25506573
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||| |||||||||||||    
T  25506607 ttgtcataccccaaattttgatcacttttctctat 25506573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 11053702 - 11053735
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||| |||||    
T  11053702 tgtcataccccaaattttgaccacttttttctat 11053735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 13825703 - 13825736
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||| |||||||||||||    
T  13825703 tgtcataccccaaattttgatcacttttctctat 13825736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 15391676 - 15391643
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||| ||||||||||||||||||||||||||    
T  15391676 tgtcatatcccaaattttgaccacttttctctat 15391643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 33298085 - 33298118
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||| ||||||||||||||||||||    
T  33298085 tgtcataccccaacttttgaccacttttctctat 33298118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 21532372 - 21532336
Alignment:
Q  212 cattgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  21532372 cattgtcataccccaaattttgaccacttttctctat 21532336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 10638326 - 10638361
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  10638326 attgtcataccccaaattttgaccacttttctctat 10638361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 27343758 - 27343723
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  27343758 attgtcataccccaaattttgaccacttttctctat 27343723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 8103154 - 8103120
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  8103154 ttgtcataccccaaattttgaccacttttctctat 8103120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 12428544 - 12428510
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  12428544 ttgtcataccccaaattttgaccacttttctctat 12428510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 8094347 - 8094314
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  8094347 tgtcataccccaaattttgaccacttttctctat 8094314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 12996476 - 12996509
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  12996476 tgtcataccccaaattttgaccacttttctctat 12996509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 52295604 - 52295637
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  52295604 tgtcataccccaaattttgaccacttttctctat 52295637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 4523745 - 4523712
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  4523745 tgtcataccccaaattttgaccactttcctctat 4523712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 19223553 - 19223588
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  19223553 attgtcataccccaaattttgaccacttttctctat 19223588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 29186345 - 29186310
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  29186345 attgtcataccccaaattttgaccacttttctctat 29186310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 20372978 - 20372945
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  20372978 tgtcataccccaaattttgaccacttttctctat 20372945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 20398700 - 20398667
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  20398700 tgtcataccccaaattttgaccacttttctctat 20398667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 24956911 - 24956878
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  24956911 tgtcataccccaaattttgaccacttttctctat 24956878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 24965374 - 24965341
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  24965374 tgtcataccccaaattttgaccacttttctctat 24965341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 31421786 - 31421822
Alignment:
Q  212 cattgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||| |||||||||||||||||||||||    
T  31421786 cattgtcatacccaaaattttgaccacttttctctat 31421822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 31410888 - 31410923
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||| |||||||||    
T  31410888 attgtcataccccaaattttgaccacatttctctat 31410923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 1728224 - 1728191
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  1728224 tgtcataccccaaattttgaccactttcctctat 1728191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 23350141 - 23350108
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||| ||||||||||    
T  23350141 tgtcataccccaaattttgaccatttttctctat 23350108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 28843940 - 28843973
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  28843940 tgtcataccccaaattttgaccactttcctctat 28843973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 28852550 - 28852583
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  28852550 tgtcataccccaaattttgaccactttcctctat 28852583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 43598111 - 43598078
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  43598111 tgtcataccccaaattttgaccactttcctctat 43598078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 43603603 - 43603570
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  43603603 tgtcataccccaaattttgaccactttcctctat 43603570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 43609095 - 43609062
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  43609095 tgtcataccccaaattttgaccactttcctctat 43609062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 29188492 - 29188520
Alignment:
Q  214 ttgtcataccccaaattttgaccactttt 242  Q
    |||||||||||||||||||||||||||||    
T  29188492 ttgtcataccccaaattttgaccactttt 29188520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 14582923 - 14582958
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  14582923 attgtcataccccaaattttgaccacttttctctat 14582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 42249522 - 42249487
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  42249522 attgtcataccccaaattttgaccacttttctctat 42249487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 15953138 - 15953104
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  15953138 ttgtcataccccaaattttgaccacttttctctat 15953104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 25483600 - 25483634
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  25483600 ttgtcataccccaaattttgaccacttttctctat 25483634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 25491206 - 25491240
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  25491206 ttgtcataccccaaattttgaccacttttctctat 25491240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 15944622 - 15944589
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  15944622 tgtcataccccaaattttgaccacttttctctat 15944589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 17687463 - 17687430
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctat 17687430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 20372378 - 20372345
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  20372378 tgtcataccccaaattttgaccacttttctctat 20372345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 20621518 - 20621551
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  20621518 tgtcataccccaaattttgaccacttttctctat 20621551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 35138593 - 35138626
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  35138593 tgtcataccccaaattttgaccacttttctctat 35138626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 35146929 - 35146962
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  35146929 tgtcataccccaaattttgaccacttttctctat 35146962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 41233909 - 41233876
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  41233909 tgtcataccccaaattttgaccacttttctctat 41233876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 38168424 - 38168389
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||| |||||||||||||||||||||||||    
T  38168424 attgtcatactccaaattttgaccacttttctctat 38168389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 44372703 - 44372738
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||| |||||    
T  44372703 attgtcataccccaaattttgaccacttttttctat 44372738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 44388614 - 44388649
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||| |||||    
T  44388614 attgtcataccccaaattttgaccacttttttctat 44388649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 24285696 - 24285725
Alignment:
Q  215 tgtcataccccaaattttgaccacttttct 244  Q
    ||||||||||||||||||||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttct 24285725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 24292372 - 24292401
Alignment:
Q  215 tgtcataccccaaattttgaccacttttct 244  Q
    ||||||||||||||||||||||||||||||    
T  24292372 tgtcataccccaaattttgaccacttttct 24292401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 34070669 - 34070636
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||| |||||||||||||    
T  34070669 tgtcataccccaaattttgatcacttttctctat 34070636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 42565994 - 42565961
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  42565994 tgtcataccccaaattttgaccactttcctctat 42565961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 42574618 - 42574585
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  42574618 tgtcataccccaaattttgaccactttcctctat 42574585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 21322876 - 21322848
Alignment:
Q  214 ttgtcataccccaaattttgaccactttt 242  Q
    |||||||||||||||||||||||||||||    
T  21322876 ttgtcataccccaaattttgaccactttt 21322848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 35104131 - 35104096
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||||    
T  35104131 attgtcataccccaaattttgaccacttttctctat 35104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 31539949 - 31539987
Alignment:
Q  210 aacattgtcataccccaaattttgaccacttttctctat 248  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  31539949 aacagtgtcataccccaaattttgaccacttttctctat 31539987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 21498963 - 21498930
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctat 21498930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 31548523 - 31548556
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  31548523 tgtcataccccaaattttgaccacttttctctat 31548556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 44320258 - 44320227
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctc 245  Q
    ||||||||||||||||||||||||||||||||    
T  44320258 ttgtcataccccaaattttgaccacttttctc 44320227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 20314093 - 20314059
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||| |||||    
T  20314093 ttgtcataccccaaattttgaccacttttttctat 20314059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 3432955 - 3432922
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  3432955 tgtcataccccaaattttgaccactttcctctat 3432922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 29221553 - 29221520
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||| ||||||||||||    
T  29221553 tgtcataccccaaattttgactacttttctctat 29221520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 22646705 - 22646733
Alignment:
Q  214 ttgtcataccccaaattttgaccactttt 242  Q
    |||||||||||||||||||||||||||||    
T  22646705 ttgtcataccccaaattttgaccactttt 22646733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Original strand, 28457556 - 28457584
Alignment:
Q  217 tcataccccaaattttgaccacttttctc 245  Q
    |||||||||||||||||||||||||||||    
T  28457556 tcataccccaaattttgaccacttttctc 28457584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 10992 - 11026
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  10992 ttgtcataccccaaattttgaccacttttctctat 11026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 138 - 172
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  138 ttgtcataccccaaattttgaccacttttctctat 172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 33034 - 33068
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  33034 ttgtcataccccaaattttgaccacttttctctat 33068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 15812 - 15846
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  15812 ttgtcataccccaaattttgaccacttttctctat 15846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 40899 - 40865
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  40899 ttgtcataccccaaattttgaccacttttctctat 40865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 121227 - 121261
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  121227 ttgtcataccccaaattttgaccacttttctctat 121261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 30542 - 30508
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||||||||||    
T  30542 ttgtcataccccaaattttgaccacttttctctat 30508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 8197761 - 8197728
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctat 8197728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 14538670 - 14538637
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  14538670 tgtcataccccaaattttgaccacttttctctat 14538637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 17628265 - 17628298
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctat 17628298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 17919199 - 17919232
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  17919199 tgtcataccccaaattttgaccacttttctctat 17919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 27341400 - 27341367
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  27341400 tgtcataccccaaattttgaccacttttctctat 27341367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 28470282 - 28470249
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  28470282 tgtcataccccaaattttgaccacttttctctat 28470249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 50824352 - 50824385
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  50824352 tgtcataccccaaattttgaccacttttctctat 50824385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 50851508 - 50851475
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  50851508 tgtcataccccaaattttgaccacttttctctat 50851475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 18039009 - 18039041
Alignment:
Q  213 attgtcataccccaaattttgaccacttttctc 245  Q
    |||||||||||||||||||||||||||||||||    
T  18039009 attgtcataccccaaattttgaccacttttctc 18039041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 2211239 - 2211272
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||| |||||||||||||||||||||||    
T  2211239 tgtcataccctaaattttgaccacttttctctat 2211272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 8154709 - 8154676
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||| ||||||    
T  8154709 tgtcataccccaaattttgaccactttcctctat 8154676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 9525499 - 9525466
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||| |||||||||||||    
T  9525499 tgtcataccccaaattttgatcacttttctctat 9525466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 9555173 - 9555140
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||| |||||||||||||    
T  9555173 tgtcataccccaaattttgatcacttttctctat 9555140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 17933655 - 17933688
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||| ||||||||||    
T  17933655 tgtcataccccaaattttgaccaattttctctat 17933688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 41006556 - 41006589
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||| ||||||||||    
T  41006556 tgtcataccccaaattttgaccatttttctctat 41006589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 41015336 - 41015369
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||| ||||||||||    
T  41015336 tgtcataccccaaattttgaccatttttctctat 41015369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 21186746 - 21186774
Alignment:
Q  214 ttgtcataccccaaattttgaccactttt 242  Q
    |||||||||||||||||||||||||||||    
T  21186746 ttgtcataccccaaattttgaccactttt 21186774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 438 - 405
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctat 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 35421 - 35388
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  35421 tgtcataccccaaattttgaccacttttctctat 35388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 7694 - 7661
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  7694 tgtcataccccaaattttgaccacttttctctat 7661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 23464 - 23497
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  23464 tgtcataccccaaattttgaccacttttctctat 23497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 192528 - 192561
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    ||||||||||||||||||||||||||||||||||    
T  192528 tgtcataccccaaattttgaccacttttctctat 192561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 150 - 116
Alignment:
Q  214 ttgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||||||||||||||||||||| ||||||    
T  150 ttgtcataccccaaattttgaccactttcctctat 116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 820 - 775
Alignment:
Q  204 ataataaacattgtcatacccc-aaattttgaccacttttctctat 248  Q
    |||||| || |||||||||||| |||||||||||||||||||||||    
T  820 ataatacactttgtcatacccccaaattttgaccacttttctctat 775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 437 - 408
Alignment:
Q  215 tgtcataccccaaattttgaccacttttct 244  Q
    ||||||||||||||||||||||||||||||    
T  437 tgtcataccccaaattttgaccacttttct 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 20547 - 20518
Alignment:
Q  215 tgtcataccccaaattttgaccacttttct 244  Q
    ||||||||||||||||||||||||||||||    
T  20547 tgtcataccccaaattttgaccacttttct 20518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 81851 - 81818
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||| |||||||||||||||||||||||    
T  81851 tgtcataccctaaattttgaccacttttctctat 81818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 65743 - 65710
Alignment:
Q  215 tgtcataccccaaattttgaccacttttctctat 248  Q
    |||||||||| |||||||||||||||||||||||    
T  65743 tgtcataccctaaattttgaccacttttctctat 65710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University