View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5604_low_8 (Length: 236)

Name: NF5604_low_8
Description: NF5604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5604_low_8
NF5604_low_8
[»] chr4 (5 HSPs)
chr4 (7-221)||(48961354-48961568)
chr4 (7-221)||(48958205-48958419)
chr4 (8-219)||(48912250-48912461)
chr4 (7-221)||(48965390-48965601)
chr4 (7-114)||(48974274-48974381)
[»] scaffold0536 (2 HSPs)
scaffold0536 (7-219)||(6415-6627)
scaffold0536 (7-219)||(10397-10609)
[»] chr8 (1 HSPs)
chr8 (17-221)||(12641395-12641599)
[»] chr2 (3 HSPs)
chr2 (30-221)||(13440261-13440449)
chr2 (30-221)||(13448424-13448612)
chr2 (30-221)||(13454895-13455083)
[»] chr7 (1 HSPs)
chr7 (7-162)||(3417434-3417586)
[»] chr5 (2 HSPs)
chr5 (30-210)||(12540757-12540934)
chr5 (30-171)||(28385445-28385583)
[»] chr6 (2 HSPs)
chr6 (7-219)||(12590073-12590288)
chr6 (30-162)||(12483391-12483526)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 48961568 - 48961354
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    |||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48961568 agaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggattt 48961469  T
Q  107 gaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48961468 gaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgc 48961369  T
Q  207 attgcgggtggaact 221  Q
    |||||||||||||||    
T  48961368 attgcgggtggaact 48961354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 48958419 - 48958205
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||||||||||  || ||||| |||||||||||||  ||||||||| ||||||||||     
T  48958419 agaagcatcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaaggattc 48958320  T
Q  107 gaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgc 206  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||| ||| ||||||  || |||||||  |||||||| |    
T  48958319 gaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtgggtgcatttatgacac 48958220  T
Q  207 attgcgggtggaact 221  Q
    |||||||||||||||    
T  48958219 attgcgggtggaact 48958205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 48912250 - 48912461
Alignment:
Q  8 gaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttg 107  Q
    ||||||| | ||||||||||  ||||||||||||||||||||||| |||  | | |||| |  |||||||||||||| || |||||| | || || ||||    
T  48912250 gaagcatcgagtcacgaattcatatgggttgttcctgaaaagaaacggacggagaatgacaatgaagaggagaaagaaaaatggttgccaaaggggtttg 48912349  T
Q  108 aagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgca 207  Q
    |||||||||  || | ||||||||||| | |||| |||||||| ||||| ||||| |||||||| ||| |||||||||| |||||||  |||||||| ||    
T  48912350 aagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccgtgggtgcatttatgacaca 48912449  T
Q  208 ttgcgggtggaa 219  Q
    ||| ||||||||    
T  48912450 ttgtgggtggaa 48912461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 48965601 - 48965390
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    |||||||| |||||| || ||| |||||||| ||||    || || ||||||| ||||||||| |||||||||||  | ||||||||  | || |||||     
T  48965601 agaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagggattc 48965502  T
Q  107 gaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgc 206  Q
    |||||||||||||||| |   |||||||||||||| |||| ||| ||||| || || ||| |||| ||| ||||| | || |||||||  |||||||| |    
T  48965501 gaagagagaaacattgga---aagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgcctttatgactc 48965405  T
Q  207 attgcgggtggaact 221  Q
    |||| || |||||||    
T  48965404 attgtggttggaact 48965390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 48974381 - 48974274
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    |||||||| ||||||| ||||  |||||||||| || || ||||||||||||| |||||||||| | || ||||| || |||||| || | || ||||||    
T  48974381 agaagcatcgggtcaccaattcatatgggttgtccccgagaagaaagggaaagaggatgagagcaatgacgagaacgaaaagtggatgccaaagggattt 48974282  T
Q  107 gaagagag 114  Q
    ||||||||    
T  48974281 gaagagag 48974274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 6415 - 6627
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    |||||||| ||||||| ||||  |||||||||||||||| |||||||||||||  |||||||| |||||||||||||  || |||||| | || |||||     
T  6415 agaagcatcgggtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaaggaaaatggttgccaaagggattc 6514  T
Q  107 gaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgc 206  Q
    ||||||||||| || | |||||||||||||||||| |||| ||| ||||| ||||||||||||||  || |||||| |||  |||||| |||||||||||    
T  6515 gaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctctgggtgcgtttatgacgc 6614  T
Q  207 attgcgggtggaa 219  Q
    |||| ||||||||    
T  6615 attgtgggtggaa 6627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 10397 - 10609
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    |||||||| |||| ||||||||||||| ||||||||||| ||||||||||||| | |||||||  ||||||||||||| || ||| |  |||||||||||    
T  10397 agaagcatcgggttacgaatttgtatgagttgttcctgagaagaaagggaaagagaatgagagtcaagaggagaaagaaaaatggctaccgaaaggattt 10496  T
Q  107 gaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgc 206  Q
    ||||| |||   |||| |||||||||||||||||| |||||||| |||||||| || |||||||| ||  ||||||| |  ||||||| ||||||||| |    
T  10497 gaagaaagagttattgcaaagaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgtttatgacac 10596  T
Q  207 attgcgggtggaa 219  Q
    |||| ||||||||    
T  10597 attgtgggtggaa 10609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 12641395 - 12641599
Alignment:
Q  17 ggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaa 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||   |||||||| |||||||||||||| ||||||||| | |||||||| ||||||||||    
T  12641395 ggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaagaggagaaagaaaagtggttgcctaaaggattcgaagagagaa 12641494  T
Q  117 acattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtg 216  Q
    |  ||||||| ||||| ||||| ||||||| || ||||||||||||||| |||||  |  ||||| | || |||||||  || ||||||||||||||||     
T  12641495 atgttgaaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctgtgggtgcattcatgacgcattgcgggtc 12641594  T
Q  217 gaact 221  Q
    |||||    
T  12641595 gaact 12641599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 13440449 - 13440261
Alignment:
Q  30 tatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaaacattgaaaagaa 129  Q
    |||||||||||||||| |||||||||||||  |||||||| || || |||||||| ||||||||| | || ||||| |||||||||||||||   | ||     
T  13440449 tatgggttgttcctgagaagaaagggaaagaagatgagagtgaggaagagaaagaaaagtggttgccaaagggattcgaagagagaaacatt---aggag 13440353  T
Q  130 gaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtggaact 221  Q
    || |||||||||||||||||| |||||||||||||||| |||  || ||||| | |||||||| |  |||||||||||||||||| ||||||    
T  13440352 gatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtggggggatttatgacgcattgcggggggaact 13440261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 13448612 - 13448424
Alignment:
Q  30 tatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaaacattgaaaagaa 129  Q
    |||||||||||||||| |||||||||||||  |||||||||||||| |||||||| ||||||||  |||| ||||||||||||||||| || |    |||    
T  13448612 tatgggttgttcctgagaagaaagggaaagaagatgagagcgaagaagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcg---ggaa 13448516  T
Q  130 gaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtggaact 221  Q
    ||||||||||||||||| ||| ||||||||||| |||| |||  || ||||| | || ||||| |  |||||||||||||||||| ||||||    
T  13448515 gaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaact 13448424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 13455083 - 13454895
Alignment:
Q  30 tatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaaacattgaaaagaa 129  Q
    ||||||||||||| || |||||||||||||  ||||||||||||||||||||| | ||||||||| |||| ||||||||||||| |||||| |   ||||    
T  13455083 tatgggttgttccggagaagaaagggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagagaaaaacatcg---agaa 13454987  T
Q  130 gaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattgcgggtggaact 221  Q
     |||||||||||||||| ||| |||||||||||||||| |||  || | ||| | || ||||| |  |||||||||||||||||| ||||||    
T  13454986 aaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtggggggatttatgacgcattgcggggggaact 13454895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 3417434 - 3417586
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    |||||||| |||||||  |||  |||||||||||| ||| |||||||| ||||  ||||||| |||||| |||||||| ||||||||| |||| ||||||    
T  3417434 agaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaagaagagaaagaaaagtggttgccgaagggattt 3417533  T
Q  107 gaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 162  Q
    || ||||||||||||| |   ||||||||||||||| ||| ||| |||||||||||    
T  3417534 gaggagagaaacattgga---aagaagggtttgatcgttaggggttgggccccaca 3417586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 12540934 - 12540757
Alignment:
Q  30 tatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaaacattgaaaagaa 129  Q
    |||||||||||||||| |||| ||||||||  |||||||  ||||| |||||||| |||||| || |||| |||||||| ||||||||||||| |   ||    
T  12540934 tatgggttgttcctgagaagagagggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaaacattgga---aa 12540838  T
Q  130 gaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatgacgcattg 210  Q
     |||||||||||||||| ||| ||||||||||| |||| |||  || ||||| | |||||||| |  |||||||| |||||    
T  12540837 aaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattg 12540757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 28385583 - 28385445
Alignment:
Q  30 tatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaaacattgaaaagaa 129  Q
    |||||||||||||||| |||||||||||||  ||||||| |||||| |||||||| |||||| || | || |||||||| ||||||||||||| |   ||    
T  28385583 tatgggttgttcctgagaagaaagggaaagaagatgagatcgaagaagagaaagaaaagtggctgccaaagggatttgaggagagaaacattgga---aa 28385487  T
Q  130 gaagggtttgatcattaaggggtgggccccacaagttatgat 171  Q
    ||||||||| || || | ||| ||||||||||||||| ||||    
T  28385486 gaagggtttcataatcaggggttgggccccacaagttctgat 28385445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 12590073 - 12590288
Alignment:
Q  7 agaagcatagggtcacgaatttgtatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggattt 106  Q
    ||||||||  || |||||||| ||||||||| |||| || || |||||||| |  |||||||| || ||||| ||| | || |||||| | |  ||||||    
T  12590073 agaagcatcaggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatgaggataaacaaaaatggttgcctagtggattt 12590172  T
Q  107 gaagagagaaacattga---aaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcggtgggtgtgtttatga 203  Q
    ||||||||||||||||    ||||||||||||||||||||||| ||| |||||||||||||| |||||  || ||||||  || ||||| | ||||||||    
T  12590173 gaagagagaaacattgggagaaagaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgtttatga 12590272  T
Q  204 cgcattgcgggtggaa 219  Q
    | ||||| || |||||    
T  12590273 cacattgtggatggaa 12590288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 12483391 - 12483526
Alignment:
Q  30 tatgggttgttcctgaaaagaaagggaaagtggatgagagcgaagaggagaaagacaagtggttggcgaaaggatttgaagagagaaacatt-gaa--aa 126  Q
    |||||||||||||||| || |||||||| |  ||||||||||| ||||||||||| ||||||||| |||| |||||||| |||||||||||| |||  ||    
T  12483391 tatgggttgttcctgagaaaaaagggaaggaagatgagagcgatgaggagaaagaaaagtggttgccgaagggatttgaggagagaaacattagaaggaa 12483490  T
Q  127 gaagaagggtttgatcattaaggggtgggccccaca 162  Q
     |||| |||||| ||||| | ||||||||| |||||    
T  12483491 taagatgggtttaatcatcagggggtgggcaccaca 12483526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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