View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5604_low_9 (Length: 203)

Name: NF5604_low_9
Description: NF5604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5604_low_9
NF5604_low_9
[»] chr8 (7 HSPs)
chr8 (153-203)||(25579723-25579773)
chr8 (162-203)||(30938386-30938427)
chr8 (162-203)||(1406993-1407034)
chr8 (174-203)||(4839714-4839743)
chr8 (162-203)||(17664560-17664601)
chr8 (162-203)||(17683716-17683757)
chr8 (162-203)||(39837482-39837523)
[»] chr7 (4 HSPs)
chr7 (162-203)||(12978559-12978600)
chr7 (153-203)||(4952308-4952358)
chr7 (162-203)||(13831604-13831645)
chr7 (162-203)||(13839635-13839676)
[»] chr6 (6 HSPs)
chr6 (162-203)||(5004165-5004206)
chr6 (153-202)||(5489076-5489125)
chr6 (168-203)||(13825807-13825842)
chr6 (168-203)||(30824455-30824490)
chr6 (5-38)||(5488939-5488972)
chr6 (162-203)||(11279941-11279982)
[»] chr5 (10 HSPs)
chr5 (162-203)||(20372833-20372874)
chr5 (162-203)||(20398555-20398596)
chr5 (162-203)||(24956766-24956807)
chr5 (162-203)||(24965229-24965270)
chr5 (162-203)||(1728079-1728120)
chr5 (162-203)||(28844044-28844085)
chr5 (162-203)||(28852654-28852695)
chr5 (162-203)||(43597966-43598007)
chr5 (162-203)||(43603458-43603499)
chr5 (162-203)||(43608950-43608991)
[»] chr3 (5 HSPs)
chr3 (162-203)||(41006660-41006701)
chr3 (162-203)||(41015440-41015481)
chr3 (162-203)||(8154564-8154605)
chr3 (162-203)||(50824456-50824497)
chr3 (162-203)||(50851363-50851404)
[»] chr2 (9 HSPs)
chr2 (162-203)||(14583029-14583070)
chr2 (162-203)||(15944477-15944518)
chr2 (162-203)||(15952992-15953033)
chr2 (162-203)||(35138697-35138738)
chr2 (162-203)||(35147033-35147074)
chr2 (162-203)||(38168277-38168318)
chr2 (162-203)||(41233764-41233805)
chr2 (162-203)||(42565849-42565890)
chr2 (162-203)||(42574473-42574514)
[»] chr1 (4 HSPs)
chr1 (162-203)||(31540058-31540099)
chr1 (162-203)||(31548627-31548668)
chr1 (162-203)||(35103984-35104025)
chr1 (162-203)||(3432810-3432851)
[»] scaffold0016 (1 HSPs)
scaffold0016 (168-203)||(23569-23604)
[»] chr4 (6 HSPs)
chr4 (168-203)||(8094208-8094243)
chr4 (168-203)||(8103014-8103049)
chr4 (162-203)||(4523600-4523641)
chr4 (162-203)||(10638410-10638451)
chr4 (162-203)||(27343611-27343652)
chr4 (5-38)||(47522366-47522399)
[»] scaffold0048 (1 HSPs)
scaffold0048 (165-203)||(7578-7616)
[»] scaffold0323 (1 HSPs)
scaffold0323 (5-38)||(17491-17524)
[»] scaffold0209 (1 HSPs)
scaffold0209 (162-203)||(4-45)
[»] scaffold0037 (1 HSPs)
scaffold0037 (5-38)||(78193-78226)
[»] scaffold0173 (1 HSPs)
scaffold0173 (5-33)||(692-720)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 25579723 - 25579773
Alignment:
Q  153 agaggtaatagggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| || ||||||||||| ||||| ||||||||||||||||||||||||    
T  25579723 agaggaaagagggttcgactcggaataaaaaatgaggtacttcaaagtaac 25579773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 30938427 - 30938386
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  30938427 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 30938386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 1406993 - 1407034
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  1406993 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 1407034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 4839714 - 4839743
Alignment:
Q  174 ggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||||||||||||||||||||||||||||    
T  4839714 ggaatcaaaaatgaggtacttcaaagtaac 4839743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 17664560 - 17664601
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  17664560 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 17664601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 17683716 - 17683757
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  17683716 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 17683757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 39837482 - 39837523
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  39837482 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 39837523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 12978600 - 12978559
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  12978600 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 12978559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 4952308 - 4952358
Alignment:
Q  153 agaggtaatagggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| || ||||| ||||| ||||| ||||||||||||||||||||||||    
T  4952308 agaggaaagagggtccgactcggaataaaaaatgaggtacttcaaagtaac 4952358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 13831645 - 13831604
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  13831645 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 13831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 13839676 - 13839635
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  13839676 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 13839635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 5004206 - 5004165
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  5004206 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 5004165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 5489076 - 5489125
Alignment:
Q  153 agaggtaatagggttcgacttggaatcaaaaatgaggtacttcaaagtaa 202  Q
    ||||| || ||||| |||||||||||||||||||| ||||||||||||||    
T  5489076 agagggaacagggtccgacttggaatcaaaaatgaagtacttcaaagtaa 5489125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 13825842 - 13825807
Alignment:
Q  168 cgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||||||||||||||||||||||||||||    
T  13825842 cgactcggaatcaaaaatgaggtacttcaaagtaac 13825807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 30824455 - 30824490
Alignment:
Q  168 cgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||||||||||||||||||||||||||||    
T  30824455 cgactcggaatcaaaaatgaggtacttcaaagtaac 30824490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 5488939 - 5488972
Alignment:
Q  5 ctggaatttttcggactcattgacattattggac 38  Q
    |||| |||||||||||||||||||||||||||||    
T  5488939 ctgggatttttcggactcattgacattattggac 5488972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 11279982 - 11279941
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  11279982 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 11279941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 20372833 - 20372874
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  20372833 agggttcgactcggaataaaaaatgaggtacttcaaagtaac 20372874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 20398555 - 20398596
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  20398555 agggttcgactcggaataaaaaatgaggtacttcaaagtaac 20398596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 24956766 - 24956807
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  24956766 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 24956807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 24965229 - 24965270
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  24965229 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 24965270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 1728079 - 1728120
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  1728079 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 1728120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 28844085 - 28844044
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  28844085 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 28844044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 28852695 - 28852654
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  28852695 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 28852654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 43597966 - 43598007
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  43597966 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 43598007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 43603458 - 43603499
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  43603458 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 43603499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 43608950 - 43608991
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  43608950 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 43608991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 41006701 - 41006660
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  41006701 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 41006660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 41015481 - 41015440
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  41015481 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 41015440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 8154564 - 8154605
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  8154564 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 8154605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 50824497 - 50824456
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  50824497 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 50824456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 50851363 - 50851404
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  50851363 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 50851404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 14583070 - 14583029
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  14583070 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 14583029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 15944477 - 15944518
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  15944477 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 15944518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 15952992 - 15953033
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  15952992 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 15953033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 35138738 - 35138697
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  35138738 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 35138697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 35147074 - 35147033
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  35147074 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 35147033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 38168277 - 38168318
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  38168277 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 38168318  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 41233764 - 41233805
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  41233764 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 41233805  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 42565849 - 42565890
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  42565849 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 42565890  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 42574473 - 42574514
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  42574473 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 42574514  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 31540099 - 31540058
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  31540099 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 31540058  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 31548668 - 31548627
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  31548668 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 31548627  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 35103984 - 35104025
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  35103984 agggtccgactcggaatcaaaaatgaggtacttcaaagtaac 35104025  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 3432810 - 3432851
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  3432810 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 3432851  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 23604 - 23569
Alignment:
Q  168 cgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||||||||||||||||||||||||||||    
T  23604 cgactcggaatcaaaaatgaggtacttcaaagtaac 23569  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 8094208 - 8094243
Alignment:
Q  168 cgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8094208 cgactcggaatcaaaaatgaggtacttcaaagtaac 8094243  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 8103014 - 8103049
Alignment:
Q  168 cgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||||||||||||||||||||||||||||    
T  8103014 cgactcggaatcaaaaatgaggtacttcaaagtaac 8103049  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 4523600 - 4523641
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  4523600 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 4523641  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 10638451 - 10638410
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  10638451 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 10638410  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 27343611 - 27343652
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  27343611 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 27343652  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 47522366 - 47522399
Alignment:
Q  5 ctggaatttttcggactcattgacattattggac 38  Q
    ||||||||| ||||||||||||||||||||||||    
T  47522366 ctggaatttatcggactcattgacattattggac 47522399  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 7578 - 7616
Alignment:
Q  165 gttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  7578 gttcgactaggaataaaaaatgaggtacttcaaagtaac 7616  T

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Target: scaffold0323 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 17491 - 17524
Alignment:
Q  5 ctggaatttttcggactcattgacattattggac 38  Q
    |||||| |||||||||||||||||||||||||||    
T  17491 ctggaaattttcggactcattgacattattggac 17524  T

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Target: scaffold0209 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 4 - 45
Alignment:
Q  162 agggttcgacttggaatcaaaaatgaggtacttcaaagtaac 203  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||    
T  4 agggtccgactcggaataaaaaatgaggtacttcaaagtaac 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 78193 - 78226
Alignment:
Q  5 ctggaatttttcggactcattgacattattggac 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  78193 ctggaatttttcggactcaatgacattattggac 78226  T

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Target: scaffold0173 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 692 - 720
Alignment:
Q  5 ctggaatttttcggactcattgacattat 33  Q
    |||||||||||||||||||||||||||||    
T  692 ctggaatttttcggactcattgacattat 720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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