View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5605-Insertion-2 (Length: 475)
Name: NF5605-Insertion-2
Description: NF5605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5605-Insertion-2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 31100244 - 31099776
Alignment:
| Q |
7 |
aaaaataatcggcatctgcaaagataataggagttttagcaacacagtgtagtaaagaaaagtgagaaacatatatatcaaaatataaagcagcaagaga |
106 |
Q |
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| T |
31100244 |
aaaaataatcggcatctgcaaagataataggagttttagcaacacagtgtagtaaagaaaagtgagaaacatatatatcaaaatataaagcagcaagaga |
31100145 |
T |
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| Q |
107 |
gaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatacaca |
206 |
Q |
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| T |
31100144 |
gaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatacaca |
31100045 |
T |
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| Q |
207 |
cagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgaggtc |
306 |
Q |
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| T |
31100044 |
cagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgaggtc |
31099945 |
T |
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| Q |
307 |
agcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgctcaagccaaggtacaaagccttcgg |
406 |
Q |
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| T |
31099944 |
agcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgctcaagccaaggtacaaagccttcag |
31099845 |
T |
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| Q |
407 |
gtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattc |
475 |
Q |
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| T |
31099844 |
gtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattc |
31099776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Original strand, 31141107 - 31141575
Alignment:
| Q |
7 |
aaaaataatcggcatctgcaaagataataggagttttagcaacacagtgtagtaaagaaaagtgagaaacatatatatcaaaatataaagcagcaagaga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141107 |
aaaaataatcggcatctgcaaagataataggagttttagcaacacagtgtagtaaagaaaagtgagaaacatatatatcaaaatataaagcagcaagaga |
31141206 |
T |
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| Q |
107 |
gaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatacaca |
206 |
Q |
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| T |
31141207 |
gaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatacaca |
31141306 |
T |
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| Q |
207 |
cagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgaggtc |
306 |
Q |
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| T |
31141307 |
cagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgaggtc |
31141406 |
T |
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| Q |
307 |
agcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgctcaagccaaggtacaaagccttcgg |
406 |
Q |
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| T |
31141407 |
agcttacactccgctggtatcggagcatcaaggtcgattcccaattgttctgcaatacacttatcatgatcatgctcaagccaaggtacaaagccttcag |
31141506 |
T |
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| Q |
407 |
gtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattc |
475 |
Q |
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| T |
31141507 |
gtaagggcttactaggattccaaggttcatcatcttcagatttaagtggtgttttgcttgtttcaattc |
31141575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 31147305 - 31147367
Alignment:
| Q |
118 |
atgaatattcagatacgtatcaacttt-gaatactagaaatcatttacttcccaaaaagatgg |
179 |
Q |
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| T |
31147305 |
atgaatattcagatacgtatcaacttttgaatactagaaatcatttacttcccaaaaagatgg |
31147367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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