View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5605_low_1 (Length: 435)
Name: NF5605_low_1
Description: NF5605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5605_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Original strand, 8537012 - 8537414
Alignment:
| Q |
20 |
caaagtagattcagtgatgctctcaagcttcttcaacatgttcacaaacacatatgtttcttcattcttgtcaccatcaagcaaatattcacattttgta |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537012 |
caaagtagattcagtgatgctctcaagcttcttcaacatgttcacaaacacatatgtttcttcattcttgtcaccatcaagcaaatattcacattttgta |
8537111 |
T |
|
| Q |
120 |
attagggaagtgatcttatttttgcttcgcgtaggaagcaaagaactaacattcatatccttcataactttcttcacattgtagagatagtcatccaaag |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537112 |
attagggaagtgatcttatttttgctttgcgtgggaagcaaagaactaacattcgtatccttcataactttcttcacattgtagagatagtcatccaaag |
8537211 |
T |
|
| Q |
220 |
catttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8537212 |
catttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttcc |
8537311 |
T |
|
| Q |
320 |
aatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8537312 |
aatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttg |
8537411 |
T |
|
| Q |
420 |
tga |
422 |
Q |
| |
|
||| |
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|
| T |
8537412 |
tga |
8537414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 198 - 427
Target Start/End: Original strand, 8569465 - 8569694
Alignment:
| Q |
198 |
ttgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagcttcttgaattattctcttaa |
297 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||| ||| |||||| |||||||| ||||||| || ||||||||||||||||| || || ||||||| || |
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|
| T |
8569465 |
ttgtaaagataatcatccaaagcatttcttgcttcaactttctttttgaacttcatgtcttgagccttgaaattctcagcttcctggatcattctctcaa |
8569564 |
T |
|
| Q |
298 |
tttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaagagacgttcaaaattccatcagc |
397 |
Q |
| |
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||| | ||||||||||||| | ||||||||||| ||||| || || ||||| ||| |||||| ||| | |||||||||||||||||||||||| |
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| T |
8569565 |
tttgtccccttgataatcttcccttctcattagttattgtaatttcatttttattgccactggtttcttccactgcagagacgttcaaaattccatcagc |
8569664 |
T |
|
| Q |
398 |
atctattgtaaagcatactttgtgatgatg |
427 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
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|
| T |
8569665 |
atctattgtaaagcatactttgtgaggatg |
8569694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 180 - 361
Target Start/End: Complemental strand, 8383911 - 8383730
Alignment:
| Q |
180 |
ttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctcagctt |
279 |
Q |
| |
|
||||| |||||| ||| ||||| ||||| || ||||||||||| ||||| | | ||||||| | ||||| |||||||| || ||||||||||| || | |
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|
| T |
8383911 |
ttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttcttcataaacttcatgtcttcagccttgaaattctctgcct |
8383812 |
T |
|
| Q |
280 |
cttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggt |
361 |
Q |
| |
|
|||| || ||||||| |||||||||||||||||| |||||| ||||||| |||| |||||||||| |||||||||| |||| |
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|
| T |
8383811 |
cttggatcattctctcaatttcatcagttgataaacttccattttcattctttattgtaatatcttgcttattcccacaggt |
8383730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 176 - 417
Target Start/End: Original strand, 8609049 - 8609290
Alignment:
| Q |
176 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
275 |
Q |
| |
|
||||||||| |||||| || ||||| || || ||||||||| |||| ||||| | | |||||| || ||||| | |||||| |||||||||||||| |
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|
| T |
8609049 |
atccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttcaagtcttcctctttgaaattctca |
8609148 |
T |
|
| Q |
276 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaag |
375 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||| | || ||| |||| || ||||| ||||||||||||||||| ||| |||||| ||||| || |
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|
| T |
8609149 |
gcttcttgaatcattctctcaatttcttcagttgaaagtcgaccattttcctttgttatagtaatatctttcttattaccactggtttcttcctctgcag |
8609248 |
T |
|
| Q |
376 |
agacgttcaaaattccatcagcatctattgtaaagcatactt |
417 |
Q |
| |
|
|||| || || || |||||||||||||| | ||||||||||| |
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|
| T |
8609249 |
agacatttaatataccatcagcatctatagcaaagcatactt |
8609290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 361
Target Start/End: Original strand, 8601103 - 8601288
Alignment:
| Q |
176 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
275 |
Q |
| |
|
||||||||| ||||| ||| | |||| ||||| ||||||| | |||| ||||| | | ||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
8601103 |
atccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcatgtcttcatctttgaaattctca |
8601202 |
T |
|
| Q |
276 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggt |
361 |
Q |
| |
|
|||||||| || ||||||| |||||| || ||||||| |||||| ||||||| ||||| ||||| |||| | |||||||| |||| |
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|
| T |
8601203 |
gcttcttggatcattctctcaatttcttcggttgatagtcttcccttttcattcgttattgtaatttcttgcctattcccacaggt |
8601288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 350
Target Start/End: Original strand, 8544765 - 8544939
Alignment:
| Q |
176 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
275 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||| | |||||||||||| |||| ||| ||| || ||||||| ||||||| || |||||||| ||| |
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|
| T |
8544765 |
atccttcattactttcctcacattgtaaagataatactccaaagcatttcttgcttcaactttttttctgaacttcatgtcttgagccttgaaattgtca |
8544864 |
T |
|
| Q |
276 |
gcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttctta |
350 |
Q |
| |
|
||||| || || ||||||| |||||| || |||||||||||||| ||||| ||||||| ||||| || |||||| |
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|
| T |
8544865 |
gcttcctggatcattctctcaatttcttcccttgataatcttccattttcaatagttattgtaatttcattctta |
8544939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 419
Target Start/End: Complemental strand, 29582792 - 29582637
Alignment:
| Q |
264 |
ttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggttt |
363 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||| |||||||| ||||||||| || |||| ||||| ||||| ||||| ||||| |||| ||||| |
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|
| T |
29582792 |
ttgaaattctctgcttcttggatcattctctcaatttcttcagttgacaatcttccatttacatttgttattgtaatctcttttttatttccagtggttt |
29582693 |
T |
|
| Q |
364 |
catcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatactttg |
419 |
Q |
| |
|
| |||||| || ||| || | || ||||| |||||||| | ||||||||||||| |
|
|
| T |
29582692 |
cttcctcagcagtgacatttagtataccatctgcatctatagcaaagcatactttg |
29582637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 350
Target Start/End: Original strand, 8580828 - 8581003
Alignment:
| Q |
175 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctc |
274 |
Q |
| |
|
|||||| ||| |||||| |||| ||||| ||||| || ||||||||||||||||| | | |||||||||||||| ||||||| || || ||| | || |
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|
| T |
8580828 |
tatcctccattactttcctcactttgtaaagataatcgtccaaagcatttattgctttaactttcttcttgaactccatgtcttgagccttaaaaatttc |
8580927 |
T |
|
| Q |
275 |
agcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttctta |
350 |
Q |
| |
|
||||| | ||| ||| ||| |||||| || |||| | ||||||| ||||||| ||||| |||||| | |||||| |
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|
| T |
8580928 |
agcttgtaaaatcattttctcaatttcctctcttgaaagtcttccattttcattcgttattgtaatagccttctta |
8581003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 415
Target Start/End: Original strand, 8589846 - 8590009
Alignment:
| Q |
252 |
atgtcttctgctttgaaattctcagcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttat |
351 |
Q |
| |
|
|||||||| || ||||| | ||||||||| || || ||||||| |||||| || ||| | ||||||| ||||||| ||||| ||||||| ||| |||| |
|
|
| T |
8589846 |
atgtcttcagccttgaagtgctcagcttcctggatcattctctcaatttcttcgcttgtcagtcttccattttcattggttattgtaatattttttttat |
8589945 |
T |
|
| Q |
352 |
tcccagaggtttcatcctcacaagagacgttcaaaattccatcagcatctattgtaaagcatac |
415 |
Q |
| |
|
| ||| | |||| |||||| ||| ||||| || || |||||||||||||| | ||||||||| |
|
|
| T |
8589946 |
taccactgctttcttcctcagcagacacgtttaatataccatcagcatctatagaaaagcatac |
8590009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 8575431 - 8575548
Alignment:
| Q |
176 |
atccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctca |
275 |
Q |
| |
|
||||||||| | |||| || |||||| ||||| || ||||| ||||||||||| | |||||||||||||| ||||||| || |||||| | ||| |
|
|
| T |
8575431 |
atccttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaactccatgtcttgagccttgaaaatttca |
8575530 |
T |
|
| Q |
276 |
gcttcttgaattattctc |
293 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
8575531 |
gcttcttgaatcattctc |
8575548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 175 - 417
Target Start/End: Original strand, 12527635 - 12527877
Alignment:
| Q |
175 |
tatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactttatgtcttctgctttgaaattctc |
274 |
Q |
| |
|
|||||||||| | |||| |||||| ||| |||||||||||||||||||| ||||| | | |||||| |||||||| || ||||| || ||||||||||| |
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|
| T |
12527635 |
tatccttcatgattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcatatcttcagccttgaaattctc |
12527734 |
T |
|
| Q |
275 |
agcttcttgaattattctcttaatttcatcagttgataatcttccaatttcattagttatggtaatatctttcttattcccagaggtttcatcctcacaa |
374 |
Q |
| |
|
|||||| || || |||||| |||||| ||| |||||||||||||| ||||||| ||||| ||||||||||||||||| ||| ||||| |||| | |
|
|
| T |
12527735 |
agcttcctggatcattctcccaatttcttcacttgataatcttccattttcatttgttattgtaatatctttcttattaccactggttttttccttcgca |
12527834 |
T |
|
| Q |
375 |
gagacgttcaaaattccatcagcatctattgtaaagcatactt |
417 |
Q |
| |
|
||||| || || || || ||||||||||| | ||||||||||| |
|
|
| T |
12527835 |
gagacttttaatataccgtcagcatctatagcaaagcatactt |
12527877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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