View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5605_low_2 (Length: 428)
Name: NF5605_low_2
Description: NF5605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5605_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 31141112 - 31140712
Alignment:
| Q |
18 |
atttttacaatcaggtactgtgttctacaatgtctgcccttttaacttttagtcataatgctttgatgatcacaaccattatataatatttaattttgtc |
117 |
Q |
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| T |
31141112 |
atttttacaatcaggtactgtgttctacaatgtctgcccttttaacttttagtcataatgctttgatgaccacaaccattatataatatttaattttgtc |
31141013 |
T |
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| Q |
118 |
atatacaatacaaatttttgtgcttttgtatcttcacaccaacagaaaactctgcttttgtttgtttattgaaacttttaacttcccactagaatcaact |
217 |
Q |
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| T |
31141012 |
atatacaatacaaatttttgtgcttttgtatcttcaccccaacagaaaactctgcttttgtttgttaattgaaacttttaacttcccactagaatcaact |
31140913 |
T |
|
| Q |
218 |
tgatgtaacgcaactatttaattagatataccctttgatgtttggtccatttctccaacatttactctatcttctgnnnnnnnnnnnnnnnnattgtagg |
317 |
Q |
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| T |
31140912 |
tgatgtaacgcaactatttaattagatataccctttgatgtttggtccatttctccaacatttactctatcttctgttttttttatttttttattgtagg |
31140813 |
T |
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| Q |
318 |
ctactccttccccagaaggatcattcaatttacattattcagattcagaattagccaaaatcgatccactcgatttccctcgggaacctactccacctat |
417 |
Q |
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| T |
31140812 |
ctactccttccccagaaggatcattcaatttacattattcagattcagaattagccaaaatcgatccactcgatttccctcgggaacctactccacctat |
31140713 |
T |
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| Q |
418 |
g |
418 |
Q |
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| T |
31140712 |
g |
31140712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 212 - 419
Target Start/End: Original strand, 31100329 - 31100536
Alignment:
| Q |
212 |
tcaacttgatgtaacgcaactatttaattagatataccctttgatgtttggtccatttctccaacatttactctatcttctgnnnnnnnnnnnnnnnnat |
311 |
Q |
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||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | |
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| T |
31100329 |
tcaacttgatgtagcacaactatttaattagatataccctttaatgtttggtccatttctccaacatttgctctatcttctgttttttttttttcctggt |
31100428 |
T |
|
| Q |
312 |
tgtaggctactccttccccagaaggatcattcaatttacattattcagattcagaattagccaaaatcgatccactcgatttccctcgggaacctactcc |
411 |
Q |
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| T |
31100429 |
tgtaggctactccttccccagaaggatcattcaatttagattattcagattcagaattagccaaaatcgatccactcgatttccctcgggaacctactcc |
31100528 |
T |
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| Q |
412 |
acctatgc |
419 |
Q |
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||| |||| |
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| T |
31100529 |
accaatgc |
31100536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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