View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606-Insertion-1 (Length: 245)
Name: NF5606-Insertion-1
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606-Insertion-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 7400834 - 7400693
Alignment:
| Q |
110 |
tgttgcctcccactattccgtttgatctgatgctagataatctttgtaggcttcctgtcaagctctatttgctacatctattaacattgatgtgataatt |
209 |
Q |
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| T |
7400834 |
tgttgcctcccactattccgtttgatctgatgctagataatctttgtaggcttcctgtcaagctctatttgctacatctattaacattgatgtgataatt |
7400735 |
T |
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| Q |
210 |
aagtttta------ttgagtttctagtatgttattctagtgt |
245 |
Q |
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| T |
7400734 |
aagttttataggctttgagtttcttgtatattattctagtgt |
7400693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 7408051 - 7407945
Alignment:
| Q |
8 |
ataagctaaccattcttccattgccactcccacaaatgatgttttgtatccagggcagcgatcccggttctttaaagtcagtaataatcatatcctcgtt |
107 |
Q |
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| T |
7408051 |
ataagctaaccgttcttccattgccactcccacaaatgatgttttgtatccagggcagcgacgccggttcttcaaagtcagtaataatcatatcctcgtt |
7407952 |
T |
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| Q |
108 |
gttgttg |
114 |
Q |
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| T |
7407951 |
gttgttg |
7407945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 7422558 - 7422380
Alignment:
| Q |
23 |
ttccattgccactcccacaaatgatgttttgtatccagggcagcgatcccggttctttaaagtcagtaataatcatatcctcgttgttgttgcctcccac |
122 |
Q |
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| T |
7422558 |
ttccatttccactcttacaaatgacgtttcgtagacagggcaacgacgccggttcttcaaagttagtcgtaatactatcatcgccgctgttgcctcccac |
7422459 |
T |
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| Q |
123 |
tattccgtttgatctgatgctagataatctttgtaggcttcctgtcaagctctatttg-ctacatctattaacattgat |
200 |
Q |
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| T |
7422458 |
tcttccgttcgatctgttgccagatattctttgtaggcttccatttaagctctatttgactacctctattaacattgat |
7422380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 27477897 - 27477943
Alignment:
| Q |
173 |
tctatttg-ctacatctattaacattgatgtgataattaagttttat |
218 |
Q |
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| T |
27477897 |
tctatttgactacctctattaacattgatgtgataattaagttttat |
27477943 |
T |
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