View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606-Insertion-10 (Length: 625)
Name: NF5606-Insertion-10
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606-Insertion-10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Complemental strand, 4914718 - 4914080
Alignment:
| Q |
8 |
cttaaaaccttcttgatg-caaacagcactagtaaatacaataatcttacatcatgggatgataagagtgatgttgattgttgttcatgggagcgtgtca |
106 |
Q |
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| T |
4914718 |
cttaaaaccttcttgatttcaaacagcactagtaaatacaataatcttacatcatgggat---aagagtgatgttgattgttgctcatgggagcgtgtca |
4914622 |
T |
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| Q |
107 |
agtgcaaccataccacaggacatgttatggatctcttgcttggtggagttacatctccaaccaatacaacttatctttggatcttcaacttttcatattt |
206 |
Q |
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| T |
4914621 |
agtgcaaccataccacaggacatgttatggatctcttgcttggaggagttacaattccaaccaatacaacttatctttggatcttcaacttttcatattt |
4914522 |
T |
|
| Q |
207 |
tcttcctttcaaccatttagttcatcttgacctatcagctaacttttttgatggttgggttgaaattgaaggtaattttatattagacnnnnnnnn--aa |
304 |
Q |
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| T |
4914521 |
tcttcctttcaaccatttagttcatcttgacttatcagctaactattttgatggttgggttgaaattgaaggtaactttatattagacttttttttttaa |
4914422 |
T |
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| Q |
305 |
ttatcatgaatcaaatttggtattccgggatggatttacaaca--gtcacacactacacaccaac-------------------gaccctcgtcgtctat |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
4914421 |
ttatcatgaatcaaatttggtattccgggatggatttacaacactgtcacacactacacaccaaccacttgcacagttgcactagaccctcgtcgtctat |
4914322 |
T |
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| Q |
384 |
tagacagtttttggttctatgcagaattgtttctacttttattagtaattaaataaaatatagagtaaattattagctgtttaattctagaaattgtatt |
483 |
Q |
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| T |
4914321 |
tagacagtttttggttctatgcagaattgtttctacttttattagtaattaaataaaatatagagtaaattattagctgtttaattctagaaattgtatt |
4914222 |
T |
|
| Q |
484 |
ctccagacaatttggtccttgaaattaatgaattcacaaaatgatccgaagattctcaatcacattagtcttccgagacaatttcaagaattgaattgat |
583 |
Q |
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| T |
4914221 |
ctccagacaatttggtccttgaaattaatgaattcacaaaatgatccgaagattctcaatcacattagtcttccgagacaatttcaagaattaaattgat |
4914122 |
T |
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| Q |
584 |
tgatccaaacagattaataggatcaagaatattcataatcat |
625 |
Q |
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| T |
4914121 |
tgatccaaacagattaataggatcaagaaaattcataatcat |
4914080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 32748675 - 32748395
Alignment:
| Q |
8 |
cttaaaaccttcttgatg-caaacagcactagtaaatacaataatcttacatcatgggatgataagagtgatgttgattgttgttcatgggagcgtgtca |
106 |
Q |
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||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32748675 |
cttaaaaccttcttgatttcaaatagtggtagtacatacaataatcttacatcatgggatgataagagtgatgttgattgttgtttatgggagcgtgtca |
32748576 |
T |
|
| Q |
107 |
agtgcaaccataccacaggacatgttatggatctcttgcttggtggagttacatctccaaccaatacaacttatctttggatcttcaacttttcatattt |
206 |
Q |
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| T |
32748575 |
agtgcaaccattccacaggacatgtcatagatctcttgcttggtggagttacaattccaaccgatacaactgatgactggctcctcaatttttcatactt |
32748476 |
T |
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| Q |
207 |
tcttcctttcaaccatttagttcatcttgacctatcagctaacttttttgatggttgggttgaaattgaaggtaattttat |
287 |
Q |
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| T |
32748475 |
tcttcctttcaaccagttagttcatcttgacttaaaagctaactatttggatggttgggttgaaattgaaggtaactttat |
32748395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 2126959 - 2126878
Alignment:
| Q |
33 |
cactagtaaatacaataatcttacatcatg----ggatgataagagtgatgttgattgttgttcatgggagcgtgtcaagtg |
110 |
Q |
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||||||| ||||||||| |||||||||||| |||| |||| ||||| | |||||| |||| ||||||||||||||||| |
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| T |
2126959 |
cactagtcaatacaatagtcttacatcatgcatgggattataatagtgaagctgattgctgtttttgggagcgtgtcaagtg |
2126878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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