View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606-Insertion-11 (Length: 540)
Name: NF5606-Insertion-11
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606-Insertion-11 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Original strand, 17723655 - 17724189
Alignment:
| Q |
8 |
tacatatattaatattttaatataaa--atctgaattttaatgtatgaaatgattgatgccaatgttccacaagatactaatttaaggaaaatgcaagtg |
105 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||| |
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| T |
17723655 |
tacatatattaatattttaatataaacaatttgaattttaatgtatgaaatgattgatactaatgttccacgagatactaatttaaggaaaatgtaagtg |
17723754 |
T |
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| Q |
106 |
aggcatcacaaaatgaatataaataattaagtcggactgaaatttttacaaagtattctaatgaaatctatacaatctttacaggaacactacaattacc |
205 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17723755 |
aggcatcacaaaatgaatataaataattaagtcgggctgaattttttgcaaagtattctaatgaaatctatacaatctttgcaggaacactacaattacc |
17723854 |
T |
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| Q |
206 |
attctgtgagaatttacaaaatcttcagttgttgagatatggtcagctacatcgtcatcgcttttcgtcagcatcatctaaatgcatcagaaggacagaa |
305 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
17723855 |
attctgtgagaatttacaaaatattcagttgttgagatatggtcagctacatcatcatcgcttttcgtcagcatcatctaaatgaatcataaggacagaa |
17723954 |
T |
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| Q |
306 |
caaactgcactttccgcagtacatagccgtgcatgatgatccatctctctttccatatgacttaaattcaattggccaacctcaatagaactggagtcat |
405 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17723955 |
caaactgcactttccgcagcacatagccgtgcatgatgatccatctctctttccatatgacttaaattcaattggccaacctcaatagaaccggagtcat |
17724054 |
T |
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| Q |
406 |
tcatcttcactaacggtgttatattgaatcataccattcttctaaccctcacatttccccttatcctttttccatatgttaaggggtgactgatactatc |
505 |
Q |
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| T |
17724055 |
tcatcttcactaacggtgttatattgaatcataccattcttctaaccctcacatttccccttatcctttttccatatgttaaggggtgactgatactatc |
17724154 |
T |
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| Q |
506 |
attggactcactttcatcaacaccttcatctccat |
540 |
Q |
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| T |
17724155 |
attggacttactttcatcaacaccttcatctccat |
17724189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Original strand, 19024884 - 19025418
Alignment:
| Q |
8 |
tacatatattaatattttaatataaa--atctgaattttaatgtatgaaatgattgatgccaatgttccacaagatactaatttaaggaaaatgcaagtg |
105 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||| |
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| T |
19024884 |
tacatatattaatattttaatataaacaatttgaattttaatgtatgaaatgattgatactaatgttccacgagatactaatttaaggaaaatgtaagtg |
19024983 |
T |
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| Q |
106 |
aggcatcacaaaatgaatataaataattaagtcggactgaaatttttacaaagtattctaatgaaatctatacaatctttacaggaacactacaattacc |
205 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19024984 |
aggcatcacaaaatgaatataaataattaagtcgggctgaattttttgcaaagtattctaatgaaatctatacaatctttgcaggaacactacaattacc |
19025083 |
T |
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| Q |
206 |
attctgtgagaatttacaaaatcttcagttgttgagatatggtcagctacatcgtcatcgcttttcgtcagcatcatctaaatgcatcagaaggacagaa |
305 |
Q |
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| T |
19025084 |
attctgtgagaatttacaaaatattcagttgttgagatatggtcagctacatcatcatcgcttttcgtcagcatcatctaaatgaatcataaggacagaa |
19025183 |
T |
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| Q |
306 |
caaactgcactttccgcagtacatagccgtgcatgatgatccatctctctttccatatgacttaaattcaattggccaacctcaatagaactggagtcat |
405 |
Q |
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| T |
19025184 |
caaactgcactttccgcagcacatagccgtgcatgatgatccatctctctttccatatgacttaaattcaattggccaacctcaatagaaccggagtcat |
19025283 |
T |
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| Q |
406 |
tcatcttcactaacggtgttatattgaatcataccattcttctaaccctcacatttccccttatcctttttccatatgttaaggggtgactgatactatc |
505 |
Q |
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| T |
19025284 |
tcatcttcactaacggtgttatattgaatcataccattcttctaaccctcacatttccccttatcctttttccatatgttaaggggtgactgatactatc |
19025383 |
T |
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| Q |
506 |
attggactcactttcatcaacaccttcatctccat |
540 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
19025384 |
attggacttactttcatcaacaccttcatctccat |
19025418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 18113461 - 18113361
Alignment:
| Q |
9 |
acatatattaatattttaatataaa--atctgaattttaatgtatgaaatgattgatgccaatgttccacaagatactaatttaaggaaaatgcaagtga |
106 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |
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| T |
18113461 |
acatatattaatattttaatataaacaatttgaattttaatgtatgaaatgattgataataatgatccacaagacactaatttaaggaaaatgcaagtga |
18113362 |
T |
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| Q |
107 |
g |
107 |
Q |
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| T |
18113361 |
g |
18113361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 20591884 - 20591763
Alignment:
| Q |
14 |
tattaatattttaatataaaatctgaattttaatgtatgaaatgattgatgccaa-tgttccacaagatactaatttaaggaaaatgcaagtgaggcatc |
112 |
Q |
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||||||||||| |||||| ||| | ||||||||| |||| |||||||| | | || | ||||| | | |||||| ||||||||||||||||||| |||| |
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| T |
20591884 |
tattaatatttcaatatacaatatcaattttaatatatgcaatgattgtttctaaatcatccactacacactaatgtaaggaaaatgcaagtgagacatc |
20591785 |
T |
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| Q |
113 |
acaaaatgaatataaataatta |
134 |
Q |
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| T |
20591784 |
aaaaaatgaatataaataatta |
20591763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 393
Target Start/End: Complemental strand, 19329901 - 19329806
Alignment:
| Q |
298 |
ggacagaacaaactgcactttccgcagtacatagccgtgcatgatgatccatctctctttccatatgacttaaattcaattggccaacctcaatag |
393 |
Q |
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||||||||| |||||||||||| | ||||||| ||||||||| ||||||||||| ||||||||||||| || |||||||||||| ||||||| |
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| T |
19329901 |
ggacagaactaactgcactttctacggtacataattgtgcatgattgtccatctctctatccatatgacttagatgcaattggccaacatcaatag |
19329806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 19330662 - 19330535
Alignment:
| Q |
8 |
tacatatattaatattttaatataaaatctgaattttaatgtatgaaatgattgatgccaa-tgttccacaagatactaatttaaggaaaatgcaagtga |
106 |
Q |
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|||| |||||||||||| |||||| ||| | ||||||||| |||| |||||||| | | || | ||||| | | |||||| ||||||||||||||| || |
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| T |
19330662 |
tacacatattaatatttcaatatacaatttcaattttaatatatgcaatgattgtttctaaatcatccactacacactaatgtaaggaaaatgcaagcga |
19330563 |
T |
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| Q |
107 |
ggcatcacaaaatgaatataaataatta |
134 |
Q |
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||||| |||||||||||||||||||| |
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| T |
19330562 |
cacatcaaaaaatgaatataaataatta |
19330535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 19357390 - 19357263
Alignment:
| Q |
8 |
tacatatattaatattttaatataaaatctgaattttaatgtatgaaatgattgatgccaa-tgttccacaagatactaatttaaggaaaatgcaagtga |
106 |
Q |
| |
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|||| |||||||| ||| |||||| ||| | ||||||||| |||| |||||||| | | || | ||||| | | |||||| |||||||||||||||||| |
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| T |
19357390 |
tacacatattaatttttcaatatacaatttcaattttaatatatgcaatgattgtttctaaatcatccactacacactaatgtaaggaaaatgcaagtga |
19357291 |
T |
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| Q |
107 |
ggcatcacaaaatgaatataaataatta |
134 |
Q |
| |
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||||| |||||||||||||||||||| |
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| T |
19357290 |
cacatcaaaaaatgaatataaataatta |
19357263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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