View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5606-Insertion-12 (Length: 412)

Name: NF5606-Insertion-12
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5606-Insertion-12
NF5606-Insertion-12
[»] chr5 (15 HSPs)
chr5 (8-123)||(10223667-10223782)
chr5 (332-412)||(10223282-10223362)
chr5 (212-298)||(10223442-10223529)
chr5 (194-272)||(5361503-5361582)
chr5 (121-272)||(6641938-6642095)
chr5 (188-272)||(6642070-6642155)
chr5 (188-272)||(8942882-8942967)
chr5 (121-272)||(27496022-27496179)
chr5 (164-272)||(30004075-30004184)
chr5 (188-272)||(42092228-42092313)
chr5 (173-272)||(28574661-28574761)
chr5 (195-268)||(8943218-8943292)
chr5 (188-273)||(29440293-29440379)
chr5 (188-272)||(2802892-2802977)
chr5 (188-272)||(21250274-21250359)
[»] chr2 (15 HSPs)
chr2 (163-272)||(7438420-7438530)
chr2 (179-272)||(5482889-5482983)
chr2 (163-272)||(43671260-43671370)
chr2 (180-272)||(7881634-7881727)
chr2 (188-272)||(11974166-11974251)
chr2 (188-272)||(29683594-29683679)
chr2 (188-272)||(33616014-33616099)
chr2 (188-272)||(45638077-45638162)
chr2 (163-272)||(28582459-28582569)
chr2 (187-272)||(34334547-34334633)
chr2 (121-213)||(5483015-5483112)
chr2 (188-272)||(33615756-33615841)
chr2 (188-260)||(40343703-40343775)
chr2 (163-231)||(4603595-4603663)
chr2 (161-213)||(28182263-28182315)
[»] chr8 (26 HSPs)
chr8 (163-272)||(9779115-9779225)
chr8 (188-272)||(29276637-29276722)
chr8 (163-272)||(15891761-15891871)
chr8 (187-272)||(29457135-29457221)
chr8 (188-272)||(6121524-6121609)
chr8 (188-273)||(9117518-9117604)
chr8 (163-272)||(15315176-15315286)
chr8 (163-272)||(15495545-15495655)
chr8 (187-272)||(31826850-31826936)
chr8 (163-272)||(42691913-42692023)
chr8 (188-272)||(23404083-23404168)
chr8 (173-272)||(15891648-15891748)
chr8 (163-231)||(27702445-27702513)
chr8 (189-272)||(27702602-27702686)
chr8 (161-213)||(29218481-29218533)
chr8 (194-272)||(31827161-31827240)
chr8 (163-272)||(23275339-23275449)
chr8 (163-272)||(23403826-23403936)
chr8 (163-272)||(35435388-35435498)
chr8 (187-272)||(35435584-35435670)
chr8 (121-272)||(7080-7237)
chr8 (188-272)||(22444621-22444706)
chr8 (188-272)||(44728126-44728211)
chr8 (188-272)||(44728390-44728475)
chr8 (188-272)||(15315117-15315201)
chr8 (188-272)||(15495486-15495570)
[»] chr1 (20 HSPs)
chr1 (173-272)||(4965046-4965146)
chr1 (172-273)||(5739476-5739578)
chr1 (188-272)||(29987221-29987306)
chr1 (194-272)||(1102618-1102697)
chr1 (163-273)||(15615382-15615493)
chr1 (167-273)||(32712181-32712288)
chr1 (121-272)||(1102678-1102835)
chr1 (188-272)||(20491720-20491805)
chr1 (188-272)||(39834008-39834093)
chr1 (163-291)||(18088066-18088197)
chr1 (194-272)||(20492020-20492099)
chr1 (197-272)||(41810951-41811026)
chr1 (163-272)||(4765016-4765126)
chr1 (187-272)||(4765100-4765186)
chr1 (179-272)||(41810745-41810839)
chr1 (179-272)||(45721147-45721241)
chr1 (179-272)||(49113167-49113261)
chr1 (161-214)||(4975013-4975066)
chr1 (188-271)||(18030544-18030628)
chr1 (163-231)||(29987323-29987391)
[»] chr7 (17 HSPs)
chr7 (163-272)||(45443365-45443475)
chr7 (179-272)||(48840026-48840119)
chr7 (163-272)||(44941188-44941298)
chr7 (173-273)||(18808102-18808203)
chr7 (194-272)||(37042994-37043073)
chr7 (163-272)||(8919567-8919677)
chr7 (188-272)||(18942313-18942398)
chr7 (188-272)||(42430633-42430718)
chr7 (188-272)||(42759217-42759302)
chr7 (163-231)||(45203758-45203826)
chr7 (164-231)||(29036317-29036384)
chr7 (163-272)||(22563895-22564005)
chr7 (163-213)||(22642031-22642081)
chr7 (188-272)||(3173240-3173325)
chr7 (188-272)||(47193512-47193597)
chr7 (188-272)||(48840252-48840337)
chr7 (221-272)||(47332353-47332405)
[»] chr3 (15 HSPs)
chr3 (163-272)||(10820298-10820408)
chr3 (187-272)||(33623357-33623443)
chr3 (188-272)||(13712307-13712392)
chr3 (188-272)||(17579762-17579847)
chr3 (163-214)||(29230972-29231023)
chr3 (163-272)||(11871472-11871582)
chr3 (121-213)||(11218195-11218292)
chr3 (173-272)||(11218258-11218358)
chr3 (164-215)||(23232315-23232366)
chr3 (188-270)||(48517931-48518014)
chr3 (161-231)||(47220346-47220416)
chr3 (188-272)||(10820238-10820323)
chr3 (188-272)||(17580068-17580153)
chr3 (188-271)||(8112812-8112896)
chr3 (194-272)||(54924091-54924168)
[»] chr4 (22 HSPs)
chr4 (179-272)||(50523077-50523171)
chr4 (188-268)||(18598212-18598293)
chr4 (193-272)||(21956040-21956120)
chr4 (173-272)||(40998185-40998284)
chr4 (187-272)||(40998429-40998515)
chr4 (188-272)||(18598537-18598622)
chr4 (188-272)||(25154799-25154884)
chr4 (188-272)||(29031282-29031367)
chr4 (188-272)||(29043401-29043486)
chr4 (173-272)||(13846613-13846713)
chr4 (194-272)||(34979497-34979576)
chr4 (194-272)||(40998125-40998204)
chr4 (163-273)||(41898194-41898305)
chr4 (187-272)||(21956368-21956454)
chr4 (194-272)||(25363566-25363647)
chr4 (179-272)||(41898136-41898229)
chr4 (188-272)||(14966429-14966514)
chr4 (188-272)||(15631340-15631425)
chr4 (164-213)||(20421227-20421276)
chr4 (164-272)||(25154602-25154711)
chr4 (194-273)||(6112013-6112093)
chr4 (173-272)||(41898318-41898418)
[»] scaffold0062 (1 HSPs)
scaffold0062 (188-272)||(11733-11818)
[»] scaffold0182 (2 HSPs)
scaffold0182 (121-231)||(22311-22426)
scaffold0182 (194-273)||(22449-22529)
[»] scaffold0051 (1 HSPs)
scaffold0051 (194-272)||(60491-60570)
[»] chr6 (3 HSPs)
chr6 (194-272)||(24012518-24012597)
chr6 (164-231)||(33040915-33040982)
chr6 (185-272)||(33040998-33041086)
[»] scaffold0220 (1 HSPs)
scaffold0220 (173-272)||(21975-22075)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 10223782 - 10223667
Alignment:
Q  8 aaacgaagaaggtgaggttggtggttggaaggaggagaggttgttgaagtggtgtctgcgttgcggcggcgggtgggtggtgccggcggtgttggagcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10223782 aaacgaagaaggtgaggttggtggttggaaggaggagaggttgttgaagtggtgtctgcgttgcggcggcgggtgggtggtgccggcggtggtggagcaa 10223683  T
Q  108 cgatggcttccatttt 123  Q
    |||| |||||||||||    
T  10223682 cgatagcttccatttt 10223667  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 10223362 - 10223282
Alignment:
Q  332 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctaacacttctaaaatgttatacttttttctttaa 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  10223362 cttactcagaatttcaatcttaaatttctaaagtcaaatttgatgcctagcacttctaaaatgttttacttttttctttaa 10223282  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 10223529 - 10223442
Alignment:
Q  212 aaaaatctgtctgaaaccttcgaac-ttaaaacacctatctaaaacaaacatgaaacttaaaatctatccaaaacaaactcgtaattt 298  Q
    |||||||| |||||||| ||||||  ||||| || ||||||||||||||||||||||||||||| ||||  ||||||||||| |||||    
T  10223529 aaaaatctatctgaaactttcgaaaattaaagcatctatctaaaacaaacatgaaacttaaaatttatctgaaacaaactcgaaattt 10223442  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 5361503 - 5361582
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||||||||| ||||| ||||||||||| | ||||||||  | |||||| ||||||||||| ||||||||    
T  5361503 aaacaaactcgaaatttaaagaatctatctgaaaccttagaaacttaaatgatctatctgaaacaaacatgcaacttaaa 5361582  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 272
Target Start/End: Original strand, 6641938 - 6642095
Alignment:
Q  121 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 215  Q
    |||||||||||||| ||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||      
T  6641938 tttcgagtttatttcagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggaactatctgaaacaaactcgaaacttaaagg 6642037  T
Q  216 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    | || ||||||||||| | ||||||||  |||||||  ||||||||  ||||||||||    
T  6642038 acctatctgaaaccttagaaacttaaaggacctatccgaaacaaactcgaaacttaaa 6642095  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 6642070 - 6642155
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  ||||||||||||||||| || ||||||||    
T  6642070 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaacaaacgtggaacttaaa 6642155  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 8942967 - 8942882
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||| | || | ||||||||| ||| ||||||  |||||| | ||||||||||||||||||||    
T  8942967 tatccgaaacaaactcgaaacttaaaagacctatatgaaaccttagaaacttaaaggacctatatgaaacaaacatgaaacttaaa 8942882  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 272
Target Start/End: Original strand, 27496022 - 27496179
Alignment:
Q  121 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 215  Q
    |||||||||| ||||||||| |||  | |||||||| |||||     |||||||||||||||| ||| ||  ||||  |||||||||||||||||||| |    
T  27496022 tttcgagtttgttttagataggtcctttctatcaacctccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaatttaaaga 27496121  T
Q  216 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    | || ||| ||||||| | ||||||||  || ||||  ||||||||  ||||||||||    
T  27496122 acctatctcaaaccttagaaacttaaaggacatatccgaaacaaactcgaaacttaaa 27496179  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 30004184 - 30004075
Alignment:
Q  164 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 262  Q
    |||||||||| |||| ||||||| ||||  ||| ||| ||||||||||||  | || ||||||||||| | ||||||||| || ||||| ||||||||      
T  30004184 aaagttgattcgatagaaatgatctatctgaaataaattcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacatatctgaaacaaactc 30004085  T
Q  263 gaaacttaaa 272  Q
    ||||||||||    
T  30004084 gaaacttaaa 30004075  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 42092228 - 42092313
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||  ||| |||||| | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  42092228 tatccgaaacaaacttcaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 42092313  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 28574661 - 28574761
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||| |||||||||||    
T  28574661 ttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatatgaaacttaa 28574760  T
Q  272 a 272  Q
    |    
T  28574761 a 28574761  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 8943218 - 8943292
Alignment:
Q  195 aacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 268  Q
    ||||||||||||| ||||| || || ||||||||||| | ||||||||  | |||||| ||||||||||||||||    
T  8943218 aacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaact 8943292  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 29440293 - 29440379
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 273  Q
    ||||| |||||||||| ||| ||||||||  | |||||||||||  || ||||||  | |||||||||||||| |||||||||||||    
T  29440293 tatccgaaacaaactccaaacttaaaaaacatatctgaaaccttaaaaacttaaaggatctatctaaaacaaatatgaaacttaaaa 29440379  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 2802977 - 2802892
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||| ||| |||||  | || ||| ||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  2802977 tatccgaaacaaactccaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 2802892  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 21250359 - 21250274
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| ||||||||||||||  ||||  |||| ||||||||||| ||| ||| ||  |||||||| |||||||| |||||||||||    
T  21250359 tatccgaaacaaactcgaaacataaaggatctatctgaaaccttagaaactttaaggacctatctgaaacaaacctgaaacttaaa 21250274  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 7438420 - 7438530
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 261  Q
    ||||||| |||||||| ||| ||| ||||  ||||||||||||||||||||  | || ||||||||||| ||| ||||||| |||||||||||||||||     
T  7438420 caaagtttatttgatagaaaggatctatctgaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaagacctatctaaaacaaacg 7438519  T
Q  262 tgaaacttaaa 272  Q
    |||||||||||    
T  7438520 tgaaacttaaa 7438530  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 5482983 - 5482889
Alignment:
Q  179 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||| ||| ||||| |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||||||||||    
T  5482983 taaaggatctatccgaaacaaactcgaaacttaaaacacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 5482889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 43671370 - 43671260
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||| ||  ||||  ||||||||| |||| |||||| | || ||||||||||| | ||||||||| |||||||  ||||||||     
T  43671370 caaagttgatttgatagaaaggacctatctgaaacaaacttgaaacttaaaagacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 43671271  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  43671270 cgaaacttaaa 43671260  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 7881727 - 7881634
Alignment:
Q  180 aaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||| |||||||||||||||| |||||  |||| ||||||||||| | || ||||||  ||||| | |||||||| |||||||||||    
T  7881727 aaatgacatattcaaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaaggcctatttgaaacaaacgtgaaacttaaa 7881634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 11974166 - 11974251
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| ||||||||||||||||||||  || | |||||||||||   ||||||||| || ||||| |||||||| |||||||||||    
T  11974166 tatccgaaacaaactcgaaatttaaaggatttatctgaaaccttataaacttaaaagacatatctgaaacaaacgtgaaacttaaa 11974251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 29683679 - 29683594
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| ||||| |||||    
T  29683679 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaatttaaa 29683594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 33616014 - 33616099
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  33616014 tatccgaaacaaactcaaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 33616099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 45638162 - 45638077
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || |||||||| || ||| ||||||  |||||||| ||||||||||||||||||||    
T  45638162 tatccgaaacaaactcgaaacttaaaggacctatctgaaacgttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 45638077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 28582569 - 28582459
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||| | | ||||||||  |||||||  ||||||||     
T  28582569 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccatagaaacttaaaggacctatccgaaacaaact 28582470  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  28582469 cgaaacttaaa 28582459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 34334633 - 34334547
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  34334633 atatcccaaacaaactcgaaacttaaatgacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 34334547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 5483015 - 5483112
Alignment:
Q  121 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 213  Q
    |||||||||| ||| |||||||||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||    
T  5483015 tttcgagtttgtttcagataagtcatttctatcaacctccgttaaaccaaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaa 5483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 33615841 - 33615756
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| ||||||||||||||||||||  |||| | ||||||||| | ||||||||  || ||||| ||| |||| |||||||||||    
T  33615841 tatccgaaacaaactcgaaatttaaaggatctatatgaaaccttagaaacttaaagaacttatctgaaataaacgtgaaacttaaa 33615756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 40343703 - 40343775
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaac 260  Q
    ||||| |||||||||||||| ||||| |  || ||||||||||| ||| |||||| ||||||||||||||||||    
T  40343703 tatccgaaacaaactcgaaacttaaagac-ctatctgaaaccttagaaacttaaagcacctatctaaaacaaac 40343775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 4603663 - 4603595
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 231  Q
    |||||||||||||||| ||||||  || |  |||||||||||||| ||||| || || |||||||||||    
T  4603663 caaagttgatttgatagaaatgacctaactgaaacaaactcgaaaattaaagaacctatctgaaacctt 4603595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 28182315 - 28182263
Alignment:
Q  161 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 213  Q
    |||||||||||||||||| ||||||   ||| ||||||||||||||| |||||    
T  28182315 gtcaaagttgatttgatagaaatgaccaatctaaaacaaactcgaaacttaaa 28182263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 9779115 - 9779225
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| |||||  | || |||||||||||  || ||||||  ||||||||||||||||||    
T  9779115 caaagttgatttgatagaaaggatctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatctaaaacaaaca 9779214  T
Q  262 tgaaacttaaa 272  Q
    |||||||||||    
T  9779215 tgaaacttaaa 9779225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 29276722 - 29276637
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| ||||||||||||||||||||    
T  29276722 tatccaaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacatgaaacttaaa 29276637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 15891761 - 15891871
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| ||||||||     
T  15891761 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaact 15891860  T
Q  262 tgaaacttaaa 272  Q
    | |||||||||    
T  15891861 tcaaacttaaa 15891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 29457221 - 29457135
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| ||||| || || ||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||    
T  29457221 atatccgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaagacctatctgaaacaaacatgaaacttaaa 29457135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 6121609 - 6121524
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  6121609 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggatctatctaaaacaaacatgaaacttaaa 6121524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 273
Target Start/End: Complemental strand, 9117604 - 9117518
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaaa 273  Q
    |||||||||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| |||||||||||||||||||||    
T  9117604 tatccaaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaaa 9117518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 15315286 - 15315176
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15315286 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15315187  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  15315186 cgaaacttaaa 15315176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 15495655 - 15495545
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  ||||| ||| |||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  |||||||||    
T  15495655 caaagttgatttgatagaaatgacctatccgaaataaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaaca 15495556  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  15495555 cgaaacttaaa 15495545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 31826936 - 31826850
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||||||| |||| |||||||||||    
T  31826936 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctaaaataaacgtgaaacttaaa 31826850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 42692023 - 42691913
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||| ||||||| | ||||||||  | |||| ||||||| ||     
T  42692023 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatttaaaacagacg 42691924  T
Q  262 tgaaacttaaa 272  Q
    |||||||||||    
T  42691923 tgaaacttaaa 42691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 23404083 - 23404168
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||||||||| ||  | ||||||||||| | ||||||||  | |||||| | ||||||||||||||||||    
T  23404083 tatccgaaacaaactcgaaatttaaagaacatatctgaaaccttagtaacttaaaggatctatctgagacaaacatgaaacttaaa 23404168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 15891748 - 15891648
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||| |||||| |||||  |||||||||||||| |||||  |||| ||| ||||||| | ||||||||  |||||||| |||||||| | ||||||||    
T  15891748 ttgataaaaatgacatatctgaaacaaactcgaaacttaaaggatctatctaaaaccttagaaacttaaaggacctatctgaaacaaacttcaaacttaa 15891649  T
Q  272 a 272  Q
    |    
T  15891648 a 15891648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 27702513 - 27702445
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 231  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  27702513 caaagttgatttgatagaaatgacatatcttaaacaaactcgaaacttaaaggacctatctgaaacctt 27702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 27702602 - 27702686
Alignment:
Q  189 atccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  27702602 atccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggagctatctgaaacaaacatgaaacttaaa 27702686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 29218533 - 29218481
Alignment:
Q  161 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 213  Q
    |||||||||||||||||| ||||||| ||||  |||||||||||||| |||||    
T  29218533 gtcaaagttgatttgataaaaatgatctatctgaaacaaactcgaaacttaaa 29218481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 31827161 - 31827240
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||| ||| |||||  | || ||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  31827161 aaacaaactcaaaacttaaaggacctatctgaaaccttagaaacttaaaaaatctatctgaaacaaacatgaaacttaaa 31827240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 23275339 - 23275449
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||| ||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23275339 caaagttgatttaatagaaatgacctatctgaaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23275438  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  23275439 cgaaacttaaa 23275449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 23403936 - 23403826
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  |||||||  ||||||||     
T  23403936 caaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatccgaaacaaact 23403837  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  23403836 cgaaacttaaa 23403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 35435498 - 35435388
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||| | |||||| |||||||      
T  35435498 caaagttgatttgatagaaaggacttatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaagatctatctgaaacaaatt 35435399  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  35435398 cgaaacttaaa 35435388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 35435584 - 35435670
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  35435584 atatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 35435670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 272
Target Start/End: Original strand, 7080 - 7237
Alignment:
Q  121 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 215  Q
    |||||||||| ||| ||||| |||| | |||||||| |||||     ||||||||||||| || ||| ||  ||||  |||||||||||||| |||||      
T  7080 tttcgagtttgtttcagataggtcatttctatcaacctccgttaagccaaagttgatttggtagaaaggacctatctgaaacaaactcgaaacttaaagg 7179  T
Q  216 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    | || ||||||||||| | ||||||||  || |||| |||||||||  ||||||||||    
T  7180 acctatctgaaaccttagaaacttaaaggacatatccaaaacaaactcgaaacttaaa 7237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 22444706 - 22444621
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| || || |||||||| || | ||||||||  |||||||  |||||||| |||||||||||    
T  22444706 tatccgaaacaaactcgaaacttaaagaacctatctgaaactttagaaacttaaaggacctatccgaaacaaacgtgaaacttaaa 22444621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 44728211 - 44728126
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| ||| ||||| |||| |||||  | |||||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  44728211 tatccgaaataaacttgaaacttaaaggacctgtctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 44728126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 44728390 - 44728475
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  || | ||| |||||||| |||||||||||    
T  44728390 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacttgtctgaaacaaacgtgaaacttaaa 44728475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 15315201 - 15315117
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15315201 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15315117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 15495570 - 15495486
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||| ||||| |||||  |  | ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  15495570 tatccgaaacaaacacgaaacttaaaggacttatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 15495486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 4965046 - 4965146
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||| ||||||| ||||  |||||||||| |||||||||| | || ||||||||||| | ||||||||  | ||||||||||||||||||||||||||    
T  4965046 ttgatagaaatgatctatctgaaacaaactcaaaatttaaaagacctatctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaa 4965145  T
Q  272 a 272  Q
    |    
T  4965146 a 4965146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 5739476 - 5739578
Alignment:
Q  172 tttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaactta 270  Q
    ||||||| ||||||| ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| | |||||| |||||||| |||||||||    
T  5739476 tttgatagaaatgatctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagatctatctgaaacaaacgtgaaactta 5739575  T
Q  271 aaa 273  Q
    |||    
T  5739576 aaa 5739578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 29987306 - 29987221
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||  |||||||| |||||||| |||||||||||    
T  29987306 tatccgaaacaaactcgaaacttaaagaatctatctgaaaccttaaaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 29987221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 1102697 - 1102618
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| ||||| ||  ||||||||||||| ||| || |||  ||||||||||||||||||||||| |||||    
T  1102697 aaacaaactcgaaacttaaagaacatgtctgaaaccttagaaatttaaaggacctatctaaaacaaacatgaaatttaaa 1102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 15615382 - 15615493
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  |  | ||||||||||| | ||||||||  |||||||| ||||||||     
T  15615382 caaagttgatttgatagaaatgacttatctgaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaaggacctatctgaaacaaact 15615481  T
Q  262 tgaaacttaaaa 273  Q
     |||||||||||    
T  15615482 cgaaacttaaaa 15615493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 32712288 - 32712181
Alignment:
Q  167 gttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaa 265  Q
    |||||||| ||| ||| ||||||||| |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  | |||||| |||||||||||||    
T  32712288 gttgatttaatagaaaagatatatccgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggatctatctgaaacaaacatgaa 32712189  T
Q  266 acttaaaa 273  Q
    ||||||||    
T  32712188 acttaaaa 32712181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 272
Target Start/End: Complemental strand, 1102835 - 1102678
Alignment:
Q  121 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 215  Q
    |||||||||| ||||||||| |||| | |||||||| |||||     |||||||||||||||| ||||||  ||||  ||| |||||||||| |||||      
T  1102835 tttcgagtttgttttagataggtcatttctatcaacctccgttaagtcaaagttgatttgatagaaatgacttatctgaaataaactcgaaacttaaagg 1102736  T
Q  216 atctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    | || ||||||| ||| | ||||||||   ||||||| ||||||||  ||||||||||    
T  1102735 acctatctgaaatcttagaaacttaaagggcctatctgaaacaaactcgaaacttaaa 1102678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 20491805 - 20491720
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||| | ||||| |||||||||||||||||||||    
T  20491805 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaagatctatccaaaacaaacatgaaacttaaa 20491720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 39834093 - 39834008
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||||||||| |||||  |  | ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  39834093 tatccaaaacaaactcgaaacttaaaggacttatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 39834008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 18088197 - 18088066
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || ||||||||||| | ||||||||  | |||||| ||||||||     
T  18088197 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagtacctatctgaaaccttagaaacttaaaggatctatctgaaacaaact 18088098  T
Q  262 tgaaacttaaa--atctatccaaaacaaactc 291  Q
      |||||||||  |||||||  ||||||||||    
T  18088097 caaaacttaaaggatctatctgaaacaaactc 18088066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 20492020 - 20492099
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  20492020 aaacaaactcgaaacttaaatgacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 20492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 41810951 - 41811026
Alignment:
Q  197 caaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||||||  | || ||||||||||| |||  | ||| | |||||| ||||||||||||||||||||    
T  41810951 caaactcgaaatttaaaggacctatctgaaaccttagaaacttaaagatctatctgaaacaaacatgaaacttaaa 41811026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 4765016 - 4765126
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||| ||| ||||  |||||||||||||| ||||| || || ||||||| ||| | ||||||||  || ||||  ||||||||     
T  4765016 caaagttgatttgataaaaaggatttatctgaaacaaactcgaaacttaaagaacctatctgaaatcttagaaacttaaaggacatatccgaaacaaact 4765115  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  4765116 cgaaacttaaa 4765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 4765100 - 4765186
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| ||||| || || | | ||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  4765100 atatccgaaacaaactcgaaacttaaagaacctatttaaaaccttagaaacttaaagaacctatctgaaacaaacgtgaaacttaaa 4765186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 41810839 - 41810745
Alignment:
Q  179 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||||| |||||| |||||||||  ||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  41810839 taaatgacatatccgaaacaaacttaaaacttaaaggacctatctgaaaccttagaaacttaaataacctatctgaaacaaacgtgaaacttaaa 41810745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 45721241 - 45721147
Alignment:
Q  179 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||| ||||| |||||| ||||||| |||||  |  | ||||||||||| ||| ||||||| | ||| || ||||||||||||||||||||    
T  45721241 taaatgatctatccgaaacaagctcgaaacttaaaggacatatctgaaaccttagaaacttaaaagatctacctgaaacaaacatgaaacttaaa 45721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 49113167 - 49113261
Alignment:
Q  179 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||| ||| ||||| |||||||||||||| |||||  |  ||||||||||||| | ||||||||  | |||||| ||| ||||||||||||||||    
T  49113167 taaaggatctatccgaaacaaactcgaaacttaaaggacatgtctgaaaccttagaaacttaaaggatctatctgaaataaacatgaaacttaaa 49113261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 4975013 - 4975066
Alignment:
Q  161 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 214  Q
    |||||||||||||||||| |||||| |||||  ||||||||| |||| ||||||    
T  4975013 gtcaaagttgatttgatagaaatgacatatctgaaacaaacttgaaacttaaaa 4975066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 18030544 - 18030628
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||||||||||||||||| ||||| ||| | ||||||||||| | || |||||  || ||||| ||||||| |||||| ||||    
T  18030544 tatccaaaacaaactcgaaacttaaataatatatctgaaaccttagaaatttaaaggacttatctgaaacaaatatgaaatttaa 18030628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 29987391 - 29987323
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 231  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| |||||  | || |||||||||||    
T  29987391 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 29987323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 45443365 - 45443475
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacct-tcgaacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  |||| ||||||||||||||| |||||  | || ||||||||||    ||||||||  |||||||||||||||||     
T  45443365 caaagttgatttgatagaaatgacctatctaaaacaaactcgaaacttaaaggacctatctgaaacctcaaaaacttaaaggacctatctaaaacaaacg 45443464  T
Q  262 tgaaacttaaa 272  Q
    |||||||||||    
T  45443465 tgaaacttaaa 45443475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 48840119 - 48840026
Alignment:
Q  179 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||| ||| ||||| |||||||||| ||||||||| || || ||||||||||| ||| |||||  |||||||| |||||||| |||||||||||    
T  48840119 taaaggatctatccgaaacaaactcaaaatttaaagaacctatctgaaaccttagaatttaaaggacctatctgaaacaaacgtgaaacttaaa 48840026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 44941188 - 44941298
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||  |  | ||||||| ||| | ||||||||  ||||||| |||||||||     
T  44941188 caaagttgatttgatagaaatgatatatctgaaacaaactcgaaacttaaaggacttatctgaaatcttagaaacttaaaggacctatccaaaacaaact 44941287  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  44941288 cgaaacttaaa 44941298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 18808102 - 18808203
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||| ||||||  ||||  ||||||||||||||||||||  |||| ||| ||||||| ||| | ||||  ||||||||||||||||| ||||||||||    
T  18808102 ttgatagaaatgacctatctgaaacaaactcgaaatttaaaggatctatctaaaaccttagaaacataaaggacctatctaaaacaaacgtgaaacttaa 18808201  T
Q  272 aa 273  Q
    ||    
T  18808202 aa 18808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 37043073 - 37042994
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| |||||| || |||||  ||||||||||||||||||||    
T  37043073 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaagcatctatcctaaacaaacatgaaacttaaa 37042994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 8919677 - 8919567
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  ||||  |||||||||| ||| |||||  | || |||||||||||   ||||||||| |||||||  ||||||||     
T  8919677 caaagttgatttgatagaaatgacctatctgaaacaaactcaaaacttaaaggacctatctgaaaccttaaaaacttaaaagacctatccgaaacaaact 8919578  T
Q  262 tgaaacttaaa 272  Q
    |||||||||||    
T  8919577 tgaaacttaaa 8919567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 18942398 - 18942313
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| ||||||||||||||||||||  | || ||||||||||  ||| ||||||  | |||||| ||||||||||||||||||||    
T  18942398 tatccgaaacaaactcgaaatttaaaggacctatctgaaacctcagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 18942313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 42430633 - 42430718
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  42430633 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 42430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 42759217 - 42759302
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||| | ||| |||| |||||||||||    
T  42759217 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatatgaaataaacgtgaaacttaaa 42759302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 45203758 - 45203826
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 231  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||  | || |||||||||||    
T  45203758 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaaggacctatctgaaacctt 45203826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 29036317 - 29036384
Alignment:
Q  164 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 231  Q
    ||||||||||||||| ||||||   |||| |||||||||||||| ||||| || || |||||||||||    
T  29036317 aaagttgatttgatagaaatgaccaatccgaaacaaactcgaaacttaaagaacctatctgaaacctt 29036384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 22563895 - 22564005
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||| || |||||  |||||||||||||| |||||  | || ||||||| ||| | ||||||||  |||||||  ||||||||     
T  22563895 caaagttgatttgatagaaaggacatatcggaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaggacctatccgaaacaaact 22563994  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  22563995 cgaaacttaaa 22564005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 22642031 - 22642081
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 213  Q
    |||||||||||||||| |||||| |||||  |||||||||||||| |||||    
T  22642031 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaacttaaa 22642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 3173325 - 3173240
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  | |||||| ||||||||||||||||||||    
T  3173325 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggatctatctgaaacaaacatgaaacttaaa 3173240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 47193512 - 47193597
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| ||| |||||||||| |||||  | || ||| ||||||| ||| ||||||| | |||||||||||| ||||||||||||||    
T  47193512 tatccgaaataaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaagatctatctaaaacatacatgaaacttaaa 47193597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 48840252 - 48840337
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || | ||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  48840252 tatccgaaacaaactcgaaacttaaaggacctatttgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 48840337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 47332405 - 47332353
Alignment:
Q  221 tctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||||||||| ||| ||||||  | |||||||||||||||||||||||||||    
T  47332405 tctgaaaccttagaaacttaaatgatctatctaaaacaaacatgaaacttaaa 47332353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 10820408 - 10820298
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    |||||||||||||||| ||||||  ||||  |||||||||||||| ||||| || || ||||||||||| | ||||||||| |||||||  ||||||||     
T  10820408 caaagttgatttgatagaaatgacctatctgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaagacctatccgaaacaaact 10820309  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  10820308 cgaaacttaaa 10820298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 33623357 - 33623443
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| |||||  |||| ||||||||||| | ||||||||  |||||||||||||| || |||||||||||    
T  33623357 atatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggacctatctaaaacagacgtgaaacttaaa 33623443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 13712307 - 13712392
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| || || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  13712307 tatccgaaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 13712392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 17579847 - 17579762
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| ||||||||||||||||||||    
T  17579847 tatccgaaacaaactcgaaacttaaagcacctatctgaaaccttagaaacttaaagaacctatctgaaacaaacatgaaacttaaa 17579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 29231023 - 29230972
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaa 214  Q
    |||||||||||||||| |||||| |||||  |||||||||||||||||||||    
T  29231023 caaagttgatttgatagaaatgacatatctgaaacaaactcgaaatttaaaa 29230972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 11871582 - 11871472
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    ||||||||| |||||| ||||||  |||| ||||||||||||||| |||||| | || ||||||||||| | ||||||||  ||||||   ||||||||     
T  11871582 caaagttgacttgatagaaatgacctatctaaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggacctatacgaaacaaact 11871483  T
Q  262 tgaaacttaaa 272  Q
     ||||||||||    
T  11871482 cgaaacttaaa 11871472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 11218292 - 11218195
Alignment:
Q  121 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 213  Q
    |||||||||||||| ||||| |||| | ||||||||||||||     |||||||||||||||| ||| ||  ||||  |||||||||||||| |||||    
T  11218292 tttcgagtttatttcagataggtcatttctatcaacatccgttaagccaaagttgatttgatagaaaggacctatctgaaacaaactcgaaacttaaa 11218195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 11218258 - 11218358
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||| ||||||  ||||  ||| ||||||||||||||||  |||| ||||||||||| | ||||||||  || ||||| |||||||| ||||||||||    
T  11218258 ttgatagaaatgacctatctgaaataaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacttatctgaaacaaacttgaaacttaa 11218357  T
Q  272 a 272  Q
    |    
T  11218358 a 11218358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 23232366 - 23232315
Alignment:
Q  164 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 215  Q
    ||||||||||||||| ||| || |||||| |||||||||||||| |||||||    
T  23232366 aaagttgatttgatagaaaagacatatccgaaacaaactcgaaacttaaaaa 23232315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 48518014 - 48517931
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaactta 270  Q
    ||||| |||||||||||||| |||||  | || ||| ||||||| ||| ||||||  | |||||||||||||||||||||||||    
T  48518014 tatccgaaacaaactcgaaacttaaaggacctatctaaaaccttagaaacttaaaggatctatctaaaacaaacatgaaactta 48517931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 47220416 - 47220346
Alignment:
Q  161 gtcaaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 231  Q
    |||||||||||||||||| ||||||| |||   |||||||||||||| |||||| | || ||| |||||||    
T  47220416 gtcaaagttgatttgatagaaatgatctatgtgaaacaaactcgaaacttaaaagacctatctaaaacctt 47220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 10820323 - 10820238
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| ||  | ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  10820323 tatccgaaacaaactcgaaacttaaagaacatatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 10820238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 17580068 - 17580153
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| ||| |||||||||| ||||||||  | ||| ||||||| ||| ||||||| | ||||||||||||||||| ||| |||||    
T  17580068 tatccgaaataaactcgaaacttaaaaaacttatctaaaaccttagaaacttaaaaaatctatctaaaacaaacataaaatttaaa 17580153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 8112812 - 8112896
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaac-acctatctaaaacaaacatgaaacttaa 271  Q
    |||||||||||||||||||| || ||  |  | ||||||||||| ||| || |||  ||||||||||||||||| ||||||||||    
T  8112812 tatccaaaacaaactcgaaactttaaggacttatctgaaaccttagaaatttaaaggacctatctaaaacaaacgtgaaacttaa 8112896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 54924091 - 54924168
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| ||||| || || ||||||||||| | ||||||||  |  |||||||||||||||| |||||||||    
T  54924091 aaacaaactcgaaacttaaagaacctatctgaaaccttagaaacttaaa--aggtatctaaaacaaacataaaacttaaa 54924168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 50523171 - 50523077
Alignment:
Q  179 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||| ||| ||||| |||||||||||||| ||||| ||||| || |||||| | ||| ||||||  ||||||||||||||||| |||||||||||    
T  50523171 taaaggatctatccgaaacaaactcgaaacttaaagaatctatccgaaaccatagaaacttaaatgacctatctaaaacaaacgtgaaacttaaa 50523077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 18598293 - 18598212
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaact 268  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||| | ||||||||  |||||||| |||||||| |||||||    
T  18598293 tatccgaaacaaactcgaaatttaaatgatctatctgaaaccttagaaacttaaaggacctatctgaaacaaacttgaaact 18598212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 21956120 - 21956040
Alignment:
Q  193 aaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||||||||||  | || ||||||||||| ||| ||||||  | |||||| ||||||||||||||||||||    
T  21956120 aaaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaacttaaa 21956040  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 40998284 - 40998185
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| ||| || |||||  |||||||||||||| |||||  | || ||||||||||| |||||||||  |||||||| ||||||||  ||||||||||    
T  40998284 ttgatagaaaggacatatctgaaacaaactcgaaacttaaaggacctatctgaaaccttagaacttaaaggacctatctgaaacaaactcgaaacttaaa 40998185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 40998429 - 40998515
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| ||||| || || |||||||||||   ||||||||  || |||||||||||||| |||||||||||    
T  40998429 atatccgaaacaaactcgaaacttaaagaacctatctgaaaccttataaacttaaagaacatatctaaaacaaacgtgaaacttaaa 40998515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 18598537 - 18598622
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || ||||||||||| ||| |||| |  ||||||||||||||||| |||||||||||    
T  18598537 tatccgaaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttagaggacctatctaaaacaaacttgaaacttaaa 18598622  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 25154799 - 25154884
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||| ||  |||||  | |||||||||||||| ||| ||||||| | |||||| ||||||||||||||||||||    
T  25154799 tatccgaaacaaactctaatcttaaaggacctgtctgaaaccttagaaacttaaaagatctatctgaaacaaacatgaaacttaaa 25154884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 29031367 - 29031282
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29031367 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29031282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 29043486 - 29043401
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  | || ||||||| ||| ||| ||||||| || |||||||||||||| |||||||||||    
T  29043486 tatccgaaacaaactcgaaacttaaaggacctatctgaaatcttagaaacttaaaagacttatctaaaacaaacgtgaaacttaaa 29043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 13846713 - 13846613
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||||||| ||  ||||  |||||||||||||| |||||| | || ||||||||||| | ||||||||  | |||||| ||||||||||||| |||||    
T  13846713 ttgatataaaggacctatctgaaacaaactcgaaacttaaaagacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacatgaaccttaa 13846614  T
Q  272 a 272  Q
    |    
T  13846613 a 13846613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 34979576 - 34979497
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  34979576 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 34979497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 40998204 - 40998125
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| |||||  | || |||||||| || | ||||||||| | ||||||||||||||||||||| |||||    
T  40998204 aaacaaactcgaaacttaaaggacctatctgaaactttagtaacttaaaagatctatctaaaacaaacatgaaatttaaa 40998125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 41898305 - 41898194
Alignment:
Q  163 caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaaca 261  Q
    ||||||| |||||||||||| ||  ||||  |||||||||||||| |||||  |||| ||||||||||| | ||||||||  | |||||  ||||||||     
T  41898305 caaagtttatttgatataaaagacctatctgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggatctatccgaaacaaact 41898206  T
Q  262 tgaaacttaaaa 273  Q
     |||||||||||    
T  41898205 cgaaacttaaaa 41898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 21956368 - 21956454
Alignment:
Q  187 atatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||| |||||||||||||| |||||  | || |||||||||||  || ||||||  |||||||  ||||||||||||||||||||    
T  21956368 atatccgaaacaaactcgaaacttaaaggacctatctgaaaccttaaaaacttaaaggacctatccgaaacaaacatgaaacttaaa 21956454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 25363566 - 25363647
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaa--acacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| |||||  |||| ||||||||||| ||| ||||||  | | |||||| ||||||||||||||||||||    
T  25363566 aaacaaactcgaaacttaaaggatctatctgaaaccttagaaacttaaaggagatctatctgaaacaaacatgaaacttaaa 25363647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 41898229 - 41898136
Alignment:
Q  179 taaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||| ||| ||||| |||||||||||||| || ||||| || ||||||||||| | ||||||||  ||| |||| |||||||| |||||||||||    
T  41898229 taaaggatctatccgaaacaaactcgaaactt-aaaaacctatctgaaaccttagaaacttaaaggacccatctgaaacaaacgtgaaacttaaa 41898136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 14966429 - 14966514
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| ||||| || || ||| ||||||| ||| ||||||  | ||||||||||||||||| ||| |||||    
T  14966429 tatccgaaacaaactcgaaacttaaagaacctatctaaaaccttagaaccttaaacgatctatctaaaacaaacataaaatttaaa 14966514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 15631425 - 15631340
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||||||| |||||  |||| ||||||||||| | || |||||  |||||||| ||| ||||| ||||||||||    
T  15631425 tatccgaaacaaactcgaaacttaaaggatctatctgaaaccttagaaatttaaaggacctatctgaaataaacaggaaacttaaa 15631340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 20421276 - 20421227
Alignment:
Q  164 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaa 213  Q
    ||||||||||||||| ||||||  ||||  ||||||||||||||||||||    
T  20421276 aaagttgatttgatagaaatgacctatctgaaacaaactcgaaatttaaa 20421227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 25154711 - 25154602
Alignment:
Q  164 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacat 262  Q
    ||||||||||||||| ||||||  |||| |||||||||||||||  ||||  | || ||| ||||||| | ||||||||  || ||||| ||||||||      
T  25154711 aaagttgatttgatagaaatgacctatctaaaacaaactcgaaacctaaatgagctatcttaaaccttagaaacttaaaggacatatctgaaacaaactc 25154612  T
Q  263 gaaacttaaa 272  Q
    ||||||||||    
T  25154611 gaaacttaaa 25154602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 6112013 - 6112093
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 273  Q
    |||||||||||||| |||||  | || ||||||||||| | ||||||||| ||||||| |||||||||   ||||||||||    
T  6112013 aaacaaactcgaaacttaaacgacctatctgaaaccttagaaacttaaaagacctatccaaaacaaactccaaacttaaaa 6112093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 41898318 - 41898418
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||| ||| || ||||| ||||||||||||||| |||||  |  | ||||||||||| | ||||||||  | |||||| |||||||| ||||||||||    
T  41898318 ttgatagaaaggacatatctaaaacaaactcgaaacttaaaggacatatctgaaaccttagaaacttaaatgatctatctgaaacaaacttgaaacttaa 41898417  T
Q  272 a 272  Q
    |    
T  41898418 a 41898418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 272
Target Start/End: Complemental strand, 11818 - 11733
Alignment:
Q  188 tatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||| |||||||||| ||| |||||  | || ||||||||||||||| ||||||  | |||||| ||||||||||||||||||||    
T  11818 tatccgaaacaaactccaaacttaaaggacctatctgaaaccttcgaaacttaaaggatctatctgaaacaaacatgaaacttaaa 11733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 22311 - 22426
Alignment:
Q  121 tttcgagtttattttagataagtcactcctatcaacatccgt-----caaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaa 215  Q
    |||||||||| ||| |||||||||| | ||| |||| |||||     |||||||||||||||| ||||||  ||||  ||||||||||| || |||||||    
T  22311 tttcgagtttctttcagataagtcatttctaccaacctccgttaagccaaagttgatttgatagaaatgacctatctgaaacaaactcgtaacttaaaaa 22410  T
Q  216 atctgtctgaaacctt 231  Q
    |  | |||||||||||    
T  22411 acatatctgaaacctt 22426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 22449 - 22529
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaaa 273  Q
    |||||||||||||| ||||| ||||| |||||||| || | || |||||  |||||||| |||||||| | ||||||||||    
T  22449 aaacaaactcgaaacttaaagaatctatctgaaactttagaaatttaaaggacctatctgaaacaaacgttaaacttaaaa 22529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 60570 - 60491
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcgaa-cttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||||||||| |||||  | || ||||||||||| ||| ||||||  |||||||| |||||||| |||||||||||    
T  60570 aaacaaactcgaaacttaaaggacctatctgaaaccttagaaacttaaagtacctatctgaaacaaacgtgaaacttaaa 60491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 272
Target Start/End: Original strand, 24012518 - 24012597
Alignment:
Q  194 aaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    ||||||||||||||||||||  | || ||||||||||| | ||||||||  | |||||| |||||||| |||||||||||    
T  24012518 aaacaaactcgaaatttaaaggacctatctgaaaccttagaaacttaaaggatctatctgaaacaaacgtgaaacttaaa 24012597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 33040915 - 33040982
Alignment:
Q  164 aaagttgatttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt 231  Q
    ||||||||||| ||| ||||||| ||||  |||||||||||||| |||||| | || |||||||||||    
T  33040915 aaagttgattttatagaaatgatctatctgaaacaaactcgaaacttaaaagaactatctgaaacctt 33040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 33040998 - 33041086
Alignment:
Q  185 atatatccaaaacaaactcgaaatttaaaaaatctgtctgaaacctt-cgaacttaaaacacctatctaaaacaaacatgaaacttaaa 272  Q
    |||||||| |||||||||  ||| |||||  | || ||||||||||| | ||||||||  |||||||| |||||||| |||||||||||    
T  33040998 atatatccgaaacaaacttcaaacttaaaggacctatctgaaaccttacaaacttaaaggacctatctgaaacaaacgtgaaacttaaa 33041086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 21975 - 22075
Alignment:
Q  173 ttgatataaatgatatatccaaaacaaactcgaaatttaaaaaatctgtctgaaaccttcg-aacttaaaacacctatctaaaacaaacatgaaacttaa 271  Q
    |||||| ||| ||| ||||  ||||||||||||||||||||  |||| ||||||||||| | ||||||||  ||||||   ||||||||  |||||||||    
T  21975 ttgatagaaaggatctatctgaaacaaactcgaaatttaaaggatctatctgaaaccttagaaacttaaaggacctatacgaaacaaactcgaaacttaa 22074  T
Q  272 a 272  Q
    |    
T  22075 a 22075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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