View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606-Insertion-14 (Length: 311)
Name: NF5606-Insertion-14
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606-Insertion-14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 81 - 311
Target Start/End: Complemental strand, 3658113 - 3657883
Alignment:
| Q |
81 |
gtgtttgtgttcgtgcttcatagcttctaaataaaaacattgcaaatttcagaacaaagagaaaatgcacaccataacatttgccttgatgatggtatca |
180 |
Q |
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| T |
3658113 |
gtgtttgtgtccgtgcttcatagtttctaaataaaaacattgcaaatttcagaacaaagagaaaatgcataccataacatttgccttgatgatagtatca |
3658014 |
T |
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| Q |
181 |
cggttatgaccagaagtaggatcatcttcaatcacagaaagcataacatcaatgaaatcatatttctcatttgacttactctcaatctcaacatcatgct |
280 |
Q |
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| T |
3658013 |
cggttatgaccagaagtaggatcatcttcaatcacagaaagcataacatcaatgaaatcatatttctcatttgacttactctcaatctcaacatcatgct |
3657914 |
T |
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| Q |
281 |
cttcaacccagcctccaacaactgcatccaa |
311 |
Q |
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| T |
3657913 |
cttcaacccagcttccaacaactgcatccaa |
3657883 |
T |
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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 7842331 - 7842216
Alignment:
| Q |
139 |
gagaaaatgcacaccataacatttgccttgatgatggtatcacggttatgaccagaagtaggatcatcttcaatcacagaaagcataacatcaatgaaat |
238 |
Q |
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| T |
7842331 |
gagaaaatgcacaccgtaatatttgctttgataatagtatcacggttatgaccataaacacgatcatcttcaatcacagagagcatcacatcaatgaaat |
7842232 |
T |
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| Q |
239 |
catatttctcatttga |
254 |
Q |
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| T |
7842231 |
catgtttctcatttga |
7842216 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 40747812 - 40747852
Alignment:
| Q |
33 |
tctcaaattattatccgtgtcggtgtccatgtctgtgtccg |
73 |
Q |
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| T |
40747812 |
tctcaaattattatccgtgtcggtgtctgtgtctgtgtccg |
40747852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 32766982 - 32767049
Alignment:
| Q |
33 |
tctcaaattattatccgtgtcggtgtccatgtctgtgtccgggtgtctgtgtttgtgttcgtgcttcata |
102 |
Q |
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| T |
32766982 |
tctcaaattattagcggtgtcggtgtccgtgtc-gtgtcc-agtgtctgtgtttgtatccgtgcttcata |
32767049 |
T |
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