View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606-Insertion-2 (Length: 1100)
Name: NF5606-Insertion-2
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 519; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 8 - 673
Target Start/End: Original strand, 9361201 - 9361866
Alignment:
| Q |
8 |
ctagagacactagcgtgacccaataaatataggtccgcggccatgatattcaattgaagctgcatcggccacatttaacaacgattatcatttaaaaccc |
107 |
Q |
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| T |
9361201 |
ctagagacactaacgtgacccaataaatatagatccgcggccatgatattcaattgacgctgcatcagtcacatttaacaacgattatcatttaaaaccc |
9361300 |
T |
|
| Q |
108 |
ttaaattgcctcaaatttttgttattttctctatatcttaatttatactaaatatcctatattaatttatttgacatatgctatatatgatcatgttgtt |
207 |
Q |
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| T |
9361301 |
ttaaatttcctcaaatttttgttattttctctatgtcttaatttatgctaaatatcctatattaatttatttgacataagctatatatgatcatgttgtt |
9361400 |
T |
|
| Q |
208 |
gannnnnnnnnnnnnnnnnnnnnnnnnaggcttacttagagaaagaaaggtggaagcagtggactatggttttgccaaaatttgcagtgcaatgagaggt |
307 |
Q |
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| T |
9361401 |
gatttttttttattgtgttatttttttaggcttacttagagaaagaaaggtagaagcagtggactatggttttgccaaaatttgcagtgcaatgagaggt |
9361500 |
T |
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| Q |
308 |
tgttctcaaggtcacatgggaaaacttaagagtgtggaccaatccaatcattcatattcaaactcagaagtttcagtatctgagtcagttgcaacaaaca |
407 |
Q |
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| T |
9361501 |
tgttctcaaggtcacatgggaaaacttaagagtgtggaccaatccaatcattcatattcaaactcagaagtttcagtatctgagtcagttgcaacaaaca |
9361600 |
T |
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| Q |
408 |
tgaacaatggatcaattttgggggaaagtgaaaatgttagagataagattaaggtgtcatttattgactttcttcgagtaggtgatacatatggaaattt |
507 |
Q |
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| T |
9361601 |
tgaacaatggatcaattttgggggaaagtgaaaatgttagagataagattaaggtgtcatttattgactttcttggagtaggtgatacatatggaacttt |
9361700 |
T |
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| Q |
508 |
ttgttgatgtgatagtttttggaaaatgttaacgagtgtctcagggagcaaaggaacaaaagggtgtaatgggaatttgaagagggaagttgtaatgtaa |
607 |
Q |
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| T |
9361701 |
ttgttgatgtaatagttttaggaaaatgttaacgagtgtctttgggagcaaagaaacaaaagggtgtaatgggaaattgaagagggaagttgtaatgtaa |
9361800 |
T |
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| Q |
608 |
tagtggtaaaagatgcattgatgttgtaggttttatctacactcactcatactgtgagttttgttt |
673 |
Q |
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| T |
9361801 |
tagtggtaaaagatgcattgatgttgtaggttttatctacactcactcatactgtgagttttgttt |
9361866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 803 - 999
Target Start/End: Original strand, 9362024 - 9362222
Alignment:
| Q |
803 |
ttgaagcttgcggagataaaattttcaatttctagtttttaatataaaattaaaactaactgaaatataagaaaaggaaatctattttctttaagaag-n |
901 |
Q |
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| T |
9362024 |
ttgaagcttgcggagataaaattttcaatttctagtttttaatataaaattaaaactaactgaaatataagaaaa-gaaatctattttctttaagaagaa |
9362122 |
T |
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| Q |
902 |
nnnnnnnnnnnngtttaattaaaaatatccaactatgtaccatctaactg-aagtctaatcaaatatcttccaatagataacaaacggta-tatgcacaa |
999 |
Q |
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| T |
9362123 |
aaaaaataaaaattttaattaaaaatatccaactatgtaccatctaactgaaagtctaatcaaatatcttccaatagataacaaacggtattatgcacaa |
9362222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 343 - 509
Target Start/End: Original strand, 9348552 - 9348718
Alignment:
| Q |
343 |
ggaccaatccaatcattcatattcaaactcagaagtttcagtatctgagtcagttgcaacaaacatgaacaatggatcaattttgggggaaagtgaaaat |
442 |
Q |
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| T |
9348552 |
ggaccaatccaatcattcagattcaaactcagaagattcagcatctgagccagctgcaacaaacaggaacaatggattaattttgggggacagtgaaaat |
9348651 |
T |
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| Q |
443 |
gttagagataagattaaggtgtcatttattgactttcttcgagtaggtgatacatatggaaattttt |
509 |
Q |
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| T |
9348652 |
gtgggagataagattaagatgccattttttgactttcttggagtaggtgatacatagggaacttttt |
9348718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 323 - 510
Target Start/End: Original strand, 9356781 - 9356971
Alignment:
| Q |
323 |
atgggaaaacttaagagtgtggaccaatccaatcattcatattcaaactcagaagtttcagtatctgagtcagttgcaacaaacatgaacaat---ggat |
419 |
Q |
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| T |
9356781 |
atggaaaagcttaagattgcggaccaatccaatatttcagattcaaactcagaaggttcaacatctgagtctgctgcaacaaacatgaacaataatggat |
9356880 |
T |
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| Q |
420 |
caattttgggggaaagtgaaaatgttagagataagattaaggtgtcatttattgactttcttcgagtaggtgatacatatggaaatttttg |
510 |
Q |
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||||||| ||||| ||||||||||| |||||||||||||| || ||||| ||||||||||| | || |||||||||| |||| |||||| |
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| T |
9356881 |
caattttaggggatagtgaaaatgtgggagataagattaagatgccattttttgactttcttgaaataagtgatacatagggaactttttg |
9356971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 9356525 - 9356675
Alignment:
| Q |
60 |
attgaagctgcatcggccacatttaacaacgattatcatttaaaacccttaaattgcctcaaatttttgttattttctct-atatcttaatttatactaa |
158 |
Q |
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| T |
9356525 |
attgaagctgcatcggcctcatttaacaacgattctcattt-aaacctttaaattgcttgaaaattttgcaatcttctctcatgtctt-ctttatgttaa |
9356622 |
T |
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| Q |
159 |
atatcctatattaatttatttgacatatgctata--tatgatcatgttgttga |
209 |
Q |
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| T |
9356623 |
atatcatatattaatttacttgacatatgctatatttatgaccatgttgttga |
9356675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 341 - 397
Target Start/End: Complemental strand, 33825025 - 33824969
Alignment:
| Q |
341 |
gtggaccaatccaatcattcatattcaaactcagaagtttcagtatctgagtcagtt |
397 |
Q |
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|||||||| |||||| |||| |||||||||| ||||| |||||||||||||||||| |
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| T |
33825025 |
gtggaccagtccaatttttcagattcaaactctgaagtatcagtatctgagtcagtt |
33824969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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